Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p23980 Brassica napus HOM05D006222 ORTHO05D007677 5.3e-36 153.7 70 100.0
Sp4g25240 Schrenkiella parvula HOM05D006222 ORTHO05D007677 1.4e-23 112.5 70 78.6
Thhalv10017033m.g Eutrema salsugineum HOM05D006222 ORTHO05D007677 1.7e-21 105.5 70 74.3
C04p04200 Brassica napus HOM05D006222 ORTHO05D007677 5.3e-20 100.5 68 73.5
BolC4t22057H Brassica oleracea HOM05D006222 ORTHO05D007677 5.3e-20 100.5 68 73.5
BcaC02g12413 Brassica carinata HOM05D006222 ORTHO05D007677 6.9e-20 100.1 68 73.5
A05p03600 Brassica napus HOM05D006222 ORTHO05D007677 5.9e-19 97.1 68 70.6
BraA05t19346Z Brassica rapa HOM05D006222 ORTHO05D007677 5.9e-19 97.1 68 70.6
BcaNung03540 Brassica carinata HOM05D006222 ORTHO05D007677 2.2e-18 95.1 67 71.6
Carub.0004s2559 Capsella rubella HOM05D006222 ORTHO05D007677 1.2e-16 89.4 59 71.2
AL401U10010 Arabidopsis lyrata HOM05D006222 ORTHO05D007677 2.7e-16 88.2 62 66.1
AT2G43110 Arabidopsis thaliana HOM05D006222 ORTHO05D007677 2.7e-16 88.2 60 68.3
AL4G41770 Arabidopsis lyrata HOM05D006222 ORTHO05D007677 4.7e-16 87.4 62 66.1
CARHR138180 Cardamine hirsuta HOM05D006222 ORTHO05D007677 3.9e-15 84.3 64 67.2
THA.LOC104804896 Tarenaya hassleriana HOM05D006222 ORTHO05D007677 4.8e-13 77.4 52 65.4
Sabra14G0113700 Salix brachista HOM05D006222 ORTHO05D007677 3.1e-12 74.7 57 61.4
Aa31LG1G24920 Aethionema arabicum HOM05D006222 ORTHO05D007677 4.1e-12 74.3 59 62.7
QL10p043792 Quercus lobata HOM05D006222 ORTHO05D007677 5.3e-12 73.9 52 65.4
QL10p047312 Quercus lobata HOM05D006222 ORTHO05D007677 5.3e-12 73.9 52 65.4
EL10Ac5g11641 Beta vulgaris HOM05D006222 ORTHO05D007677 9.1e-12 73.2 65 50.8
DCAR_027540 Daucus carota HOM05D006222 ORTHO05D007677 1.2e-11 72.8 65 58.5
Sopen05g032350 Solanum pennellii HOM05D006222 ORTHO05D007677 1.2e-11 72.8 61 57.4
MSTRG.24605 Avicennia marina HOM05D006222 ORTHO05D007677 1.6e-11 72.4 52 63.5
PGSC0003DMG400013073 Solanum tuberosum HOM05D006222 ORTHO05D007677 1.6e-11 72.4 61 57.4
PGSC0003DMG400023306 Solanum tuberosum HOM05D006222 ORTHO05D007677 1.6e-11 72.4 61 57.4
CAN.G1310.8 Capsicum annuum HOM05D006222 ORTHO05D007677 2.0e-11 72.0 61 54.1
TAR362G1090 Trochodendron aralioides HOM05D006222 ORTHO05D007677 2.0e-11 72.0 52 61.5
COL.COLO4_07298 Corchorus olitorius HOM05D006222 ORTHO05D007677 2.6e-11 71.6 52 61.5
Thecc.04G181000 Theobroma cacao HOM05D006222 ORTHO05D007677 3.5e-11 71.2 52 61.5
Duzib212G0460 Durio zibethinus HOM05D006222 ORTHO05D007677 4.5e-11 70.9 52 61.5
Duzib268G0300 Durio zibethinus HOM05D006222 ORTHO05D007677 5.9e-11 70.5 52 59.6
CDE05G0624 Ceratophyllum demersum HOM05D006222 ORTHO05D007677 7.7e-11 70.1 57 54.4
Cc03_g10460 Coffea canephora HOM05D006222 ORTHO05D007677 7.7e-11 70.1 64 56.2
Hma1.2p1_1477F.1_g285900 Hydrangea macrophylla HOM05D006222 ORTHO05D007677 7.7e-11 70.1 59 50.8
TWI63G0082 Tripterygium wilfordii HOM05D006222 ORTHO05D007677 7.7e-11 70.1 50 62.0
Actinidia32943 Actinidia chinensis HOM05D006222 ORTHO05D007677 1.3e-10 69.3 52 53.8
AUR62029129 Chenopodium quinoa HOM05D006222 ORTHO05D007677 1.3e-10 69.3 52 59.6
Aqoxy5G00038 Aquilegia oxysepala HOM05D006222 ORTHO05D007677 1.7e-10 68.9 57 54.4
Haze_11067 Corylus avellana HOM05D006222 ORTHO05D007677 1.7e-10 68.9 52 57.7
Gohir.A10G136100 Gossypium hirsutum HOM05D006222 ORTHO05D007677 2.2e-10 68.6 52 57.7
Lj3P863T15 Lonicera japonica HOM05D006222 ORTHO05D007677 2.2e-10 68.6 47 59.6
SGA_v2.0_scaffold31G12583 Striga asiatica HOM05D006222 ORTHO05D007677 2.2e-10 68.6 52 57.7
Actinidia35881 Actinidia chinensis HOM05D006222 ORTHO05D007677 2.9e-10 68.2 52 53.8
Cfa008558 Carpinus fangiana HOM05D006222 ORTHO05D007677 3.8e-10 67.8 52 57.7
Psat0s4086g0080 Pisum sativum HOM05D006222 ORTHO05D007677 3.8e-10 67.8 55 56.4
GSVIVG01031673001 Vitis vinifera HOM05D006222 ORTHO05D007677 3.8e-10 67.8 68 50.0
Gohir.D10G130500 Gossypium hirsutum HOM05D006222 ORTHO05D007677 5.0e-10 67.4 52 55.8
Gorai.011G144300 Gossypium raimondii HOM05D006222 ORTHO05D007677 5.0e-10 67.4 52 55.8
Hund13303 Selenicereus undatus HOM05D006222 ORTHO05D007677 5.0e-10 67.4 52 57.7
Eucgr.A00219 Eucalyptus grandis HOM05D006222 ORTHO05D007677 6.5e-10 67.0 69 47.8
Peaxi162Scf00423g00727 Petunia axillaris HOM05D006222 ORTHO05D007677 6.5e-10 67.0 60 56.7
CSS0002349 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 8.5e-10 66.6 48 60.4
Sc07g0007090 Simmondsia chinensis HOM05D006222 ORTHO05D007677 8.5e-10 66.6 52 59.6
CSS0005997 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 1.1e-09 66.2 48 58.3
CANSAT78G1479 Cannabis sativa HOM05D006222 ORTHO05D007677 1.1e-09 66.2 52 59.6
SalBow3G0382 Salvia bowleyana HOM05D006222 ORTHO05D007677 1.1e-09 66.2 68 48.5
MELO3C017672.2 Cucumis melo HOM05D006222 ORTHO05D007677 1.5e-09 65.9 59 50.8
Ah.12g060860 Amaranthus hybridus HOM05D006222 ORTHO05D007677 1.9e-09 65.5 52 55.8
Ah.12g062130 Amaranthus hybridus HOM05D006222 ORTHO05D007677 1.9e-09 65.5 52 55.8
C03p28590 Brassica napus HOM05D006222 ORTHO05D007677 1.9e-09 65.5 51 64.7
CsaV3_4G003830 Cucumis sativus L. HOM05D006222 ORTHO05D007677 1.9e-09 65.5 59 49.2
Manes.11G113101 Manihot esculenta HOM05D006222 ORTHO05D007677 1.9e-09 65.5 52 57.7
ECA232G0640 Erigeron canadensis HOM05D006222 ORTHO05D007677 2.5e-09 65.1 50 56.0
FvH4_6g25320 Fragaria vesca HOM05D006222 ORTHO05D007677 2.5e-09 65.1 65 50.8
Rhsim09G0036800 Rhododendron simsii HOM05D006222 ORTHO05D007677 3.2e-09 64.7 52 57.7
ClCG07G016700 Citrullus lanatus HOM05D006222 ORTHO05D007677 4.2e-09 64.3 59 49.2
Ciclev10021532m.g Citrus clementina HOM05D006222 ORTHO05D007677 4.2e-09 64.3 55 56.4
PGR083G0744 Punica granatum HOM05D006222 ORTHO05D007677 4.2e-09 64.3 50 52.0
RcHm_v2.0_Chr4g0409281 Rosa chinensis HOM05D006222 ORTHO05D007677 4.2e-09 64.3 50 58.0
CiPaw.02G058300 Carya illinoinensis HOM05D006222 ORTHO05D007677 7.2e-09 63.5 50 58.0
CDE05G2371 Ceratophyllum demersum HOM05D006222 ORTHO05D007677 7.2e-09 63.5 52 51.9
FvH4_4g11840 Fragaria vesca HOM05D006222 ORTHO05D007677 7.2e-09 63.5 65 50.8
FAN12G2296 Fragaria x ananassa HOM05D006222 ORTHO05D007677 7.2e-09 63.5 65 50.8
FAN12G2611 Fragaria x ananassa HOM05D006222 ORTHO05D007677 7.2e-09 63.5 65 50.8
Sed0019288 Sechium edule HOM05D006222 ORTHO05D007677 7.2e-09 63.5 50 56.0
HanXRQChr14g0432081 Helianthus annuus HOM05D006222 ORTHO05D007677 9.4e-09 63.2 48 56.2
Oeu034479.1 Olea europaea HOM05D006222 ORTHO05D007677 9.4e-09 63.2 52 57.7
arahy.Tifrunner.gnm1.ann1.VRQF1E Arachis hypogaea HOM05D006222 ORTHO05D007677 1.2e-08 62.8 50 54.0
Migut.N00436 Erythranthe guttata HOM05D006222 ORTHO05D007677 1.2e-08 62.8 52 55.8
Medtr1g116820 Medicago truncatula HOM05D006222 ORTHO05D007677 1.2e-08 62.8 50 54.0
Prupe.1G180600 Prunus persica HOM05D006222 ORTHO05D007677 1.2e-08 62.8 50 58.0
Atru.chr3.1674 Acer truncatum HOM05D006222 ORTHO05D007677 1.6e-08 62.4 68 50.0
TPR.G8895 Trifolium pratense HOM05D006222 ORTHO05D007677 1.6e-08 62.4 50 52.0
ATR1089G038 Amborella trichopoda HOM05D006222 ORTHO05D007677 2.1e-08 62.0 48 54.2
PSO170G0570 Papaver somniferum HOM05D006222 ORTHO05D007677 2.1e-08 62.0 50 56.0
HPP92_024563 Vanilla planifolia HOM05D006222 ORTHO05D007677 2.1e-08 62.0 48 50.0
Nn3g20171 Nelumbo nucifera HOM05D006222 ORTHO05D007677 2.7e-08 61.6 48 54.2
PSO357G0657 Papaver somniferum HOM05D006222 ORTHO05D007677 2.7e-08 61.6 50 54.0
Ah.12g060290 Amaranthus hybridus HOM05D006222 ORTHO05D007677 3.6e-08 61.2 52 55.8
Ca_11418_v3 Cicer arietinum L. HOM05D006222 ORTHO05D007677 4.7e-08 60.8 50 52.0
arahy.Tifrunner.gnm1.ann1.S0FJR3 Arachis hypogaea HOM05D006222 ORTHO05D007677 6.1e-08 60.5 50 52.0
CSS0048231 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 6.1e-08 60.5 48 54.2
Lj5g0022978 Lotus japonicus HOM05D006222 ORTHO05D007677 6.1e-08 60.5 50 50.0
Glyma.20G248400 Glycine max HOM05D006222 ORTHO05D007677 8.0e-08 60.1 66 45.5
Lalb_Chr06g0164621 Lupinus albus HOM05D006222 ORTHO05D007677 8.0e-08 60.1 50 52.0
MD04G1034000 Malus domestica HOM05D006222 ORTHO05D007677 1.8e-07 58.9 50 54.0
FAN17G0755 Fragaria x ananassa HOM05D006222 ORTHO05D007677 5.2e-07 57.4 43 60.5
unitig_578.g15951 Utricularia gibba HOM05D006222 ORTHO05D007677 5.2e-07 57.4 52 53.8
Nitab4.5_0000161g0130 Nicotiana tabacum HOM05D006222 ORTHO05D007677 8.8e-07 56.6 55 45.5
Nitab4.5_0007578g0020 Nicotiana tabacum HOM05D006222 ORTHO05D007677 8.8e-07 56.6 55 45.5


User provided reference genes

Program Settings