Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p23540 Brassica napus HOM05D003648 ORTHO05D004267 3.7e-138 495.0 268 100.0
BraA03t11571Z Brassica rapa HOM05D003648 ORTHO05D004267 1.7e-130 469.5 270 96.7
C03p28080 Brassica napus HOM05D003648 ORTHO05D004267 2.8e-125 452.2 272 93.4
BcaC01g05312 Brassica carinata HOM05D003648 ORTHO05D004267 7.5e-123 444.1 271 92.6
BcaB01g03435 Brassica carinata HOM05D003648 ORTHO05D004267 5.4e-105 384.8 271 83.0
BolC3t15177H Brassica oleracea HOM05D003648 ORTHO05D004267 1.9e-102 376.3 230 93.9
CARHR137130 Cardamine hirsuta HOM05D003648 ORTHO05D004267 1.2e-88 330.5 281 76.5
A05p02700 Brassica napus HOM05D003648 ORTHO05D004267 2.8e-85 319.3 276 74.6
BraA05t19262Z Brassica rapa HOM05D003648 ORTHO05D004267 2.8e-85 319.3 276 74.6
BcaC02g12455 Brassica carinata HOM05D003648 ORTHO05D004267 6.9e-84 314.7 274 73.7
C04p03220 Brassica napus HOM05D003648 ORTHO05D004267 6.9e-84 314.7 274 73.7
BolC4t21960H Brassica oleracea HOM05D003648 ORTHO05D004267 6.9e-84 314.7 274 73.7
Carub.0004s2437 Capsella rubella HOM05D003648 ORTHO05D004267 5.1e-79 298.5 274 71.2
Thhalv10017052m.g Eutrema salsugineum HOM05D003648 ORTHO05D004267 6.7e-79 298.1 291 68.7
AL4G40410 Arabidopsis lyrata HOM05D003648 ORTHO05D004267 3.3e-78 295.8 276 69.9
C04p69480 Brassica napus HOM05D003648 ORTHO05D004267 9.9e-75 284.3 277 68.6
SpUn1032_0010 Schrenkiella parvula HOM05D003648 ORTHO05D004267 1.3e-74 283.9 227 78.0
BolC4t28447H Brassica oleracea HOM05D003648 ORTHO05D004267 6.4e-74 281.6 279 67.7
AT2G42040 Arabidopsis thaliana HOM05D003648 ORTHO05D004267 1.0e-71 274.2 276 66.3
BcaC02g07267 Brassica carinata HOM05D003648 ORTHO05D004267 1.2e-67 260.8 276 64.9
A04p31970 Brassica napus HOM05D003648 ORTHO05D004267 1.1e-62 244.2 279 62.7
BraA04t18655Z Brassica rapa HOM05D003648 ORTHO05D004267 2.7e-48 196.4 278 55.4
Aa31LG1G24140 Aethionema arabicum HOM05D003648 ORTHO05D004267 1.3e-45 187.6 289 50.9
THA.LOC104824476 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 1.0e-39 167.9 313 42.5
BcaB06g29223 Brassica carinata HOM05D003648 ORTHO05D004267 5.7e-38 162.2 274 50.0
THA.LOC104802623 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 2.2e-37 160.2 324 40.7
Gorai.002G156300 Gossypium raimondii HOM05D003648 ORTHO05D004267 4.5e-27 125.9 287 38.3
Gohir.A01G137604 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.0e-26 124.8 285 38.9
Gohir.D01G125600 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.3e-26 124.4 287 38.0
ClCG10G017600 Citrullus lanatus HOM05D003648 ORTHO05D004267 1.9e-25 120.6 260 38.8
Phvul.007G260600 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 8.8e-23 111.7 143 51.7
Potri.006G193500 Populus trichocarpa HOM05D003648 ORTHO05D004267 8.8e-23 111.7 368 34.2
Ah.13g075770 Amaranthus hybridus HOM05D003648 ORTHO05D004267 1.5e-22 110.9 271 38.0
Nn2g15698 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.5e-22 110.9 115 56.5
Potri.016G058100 Populus trichocarpa HOM05D003648 ORTHO05D004267 2.0e-22 110.5 346 34.7
TWI53G1880 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 2.0e-22 110.5 331 36.0
Eucgr.A02456 Eucalyptus grandis HOM05D003648 ORTHO05D004267 2.6e-22 110.2 343 33.2
Sabra16G0061400 Salix brachista HOM05D003648 ORTHO05D004267 2.6e-22 110.2 333 36.6
Sed0001893 Sechium edule HOM05D003648 ORTHO05D004267 2.6e-22 110.2 283 36.4
Cfa020157 Carpinus fangiana HOM05D003648 ORTHO05D004267 3.4e-22 109.8 365 32.3
MELO3C009616.2 Cucumis melo HOM05D003648 ORTHO05D004267 3.4e-22 109.8 115 58.3
Manes.08G043500 Manihot esculenta HOM05D003648 ORTHO05D004267 9.8e-22 108.2 324 34.6
Ciclev10012160m.g Citrus clementina HOM05D003648 ORTHO05D004267 1.3e-21 107.8 339 32.7
Manes.09G036200 Manihot esculenta HOM05D003648 ORTHO05D004267 1.3e-21 107.8 349 32.7
Peaxi162Scf00480g00036 Petunia axillaris HOM05D003648 ORTHO05D004267 1.7e-21 107.5 113 54.9
VMungo0720G1699 Vigna mungo HOM05D003648 ORTHO05D004267 1.7e-21 107.5 130 51.5
CiPaw.09G029700 Carya illinoinensis HOM05D003648 ORTHO05D004267 2.2e-21 107.1 349 31.2
Oeu039811.1 Olea europaea HOM05D003648 ORTHO05D004267 2.2e-21 107.1 86 65.1
Hund19206 Selenicereus undatus HOM05D003648 ORTHO05D004267 2.8e-21 106.7 300 32.0
TPR.G18228 Trifolium pratense HOM05D003648 ORTHO05D004267 2.8e-21 106.7 134 53.0
Glyma.09G110100 Glycine max HOM05D003648 ORTHO05D004267 4.8e-21 105.9 141 49.6
Medtr1g054175 Medicago truncatula HOM05D003648 ORTHO05D004267 4.8e-21 105.9 167 41.3
Sabra16G0061500 Salix brachista HOM05D003648 ORTHO05D004267 4.8e-21 105.9 342 32.7
Cc06_g15770 Coffea canephora HOM05D003648 ORTHO05D004267 6.3e-21 105.5 149 43.0
FAN02G2154 Fragaria x ananassa HOM05D003648 ORTHO05D004267 6.3e-21 105.5 370 32.4
PGR004G0238 Punica granatum HOM05D003648 ORTHO05D004267 1.4e-20 104.4 323 33.7
GSVIVG01033486001 Vitis vinifera HOM05D003648 ORTHO05D004267 1.4e-20 104.4 83 68.7
FAN14G0601 Fragaria x ananassa HOM05D003648 ORTHO05D004267 1.8e-20 104.0 370 32.2
FvH4_6g22070 Fragaria vesca HOM05D003648 ORTHO05D004267 2.4e-20 103.6 369 32.0
Lsat_1_v5_gn_9_26100 Lactuca sativa HOM05D003648 ORTHO05D004267 2.4e-20 103.6 121 51.2
Phvul.001G143000 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 2.4e-20 103.6 131 48.9
Potri.006G193300 Populus trichocarpa HOM05D003648 ORTHO05D004267 2.4e-20 103.6 342 32.2
BcaB01g03437 Brassica carinata HOM05D003648 ORTHO05D004267 4.1e-20 102.8 61 96.7
CsaV3_3G038720 Cucumis sativus L. HOM05D003648 ORTHO05D004267 4.1e-20 102.8 285 35.1
Lj1g0001044 Lotus japonicus HOM05D003648 ORTHO05D004267 4.1e-20 102.8 172 44.2
Actinidia22042 Actinidia chinensis HOM05D003648 ORTHO05D004267 5.4e-20 102.4 141 46.1
Glyma.02G171900 Glycine max HOM05D003648 ORTHO05D004267 7.0e-20 102.1 133 50.4
Glyma.03G145500 Glycine max HOM05D003648 ORTHO05D004267 7.0e-20 102.1 134 50.0
Glyma.19G148700 Glycine max HOM05D003648 ORTHO05D004267 7.0e-20 102.1 140 50.0
FAN05G4067 Fragaria x ananassa HOM05D003648 ORTHO05D004267 1.2e-19 101.3 373 31.9
Potri.016G058000 Populus trichocarpa HOM05D003648 ORTHO05D004267 1.2e-19 101.3 333 33.6
Prupe.7G079000 Prunus persica HOM05D003648 ORTHO05D004267 1.2e-19 101.3 155 45.2
TAR369G0578 Trochodendron aralioides HOM05D003648 ORTHO05D004267 1.2e-19 101.3 101 57.4
Actinidia22043 Actinidia chinensis HOM05D003648 ORTHO05D004267 1.6e-19 100.9 159 46.5
TPR.G15988 Trifolium pratense HOM05D003648 ORTHO05D004267 1.6e-19 100.9 119 52.1
VMungo1383G3335 Vigna mungo HOM05D003648 ORTHO05D004267 1.6e-19 100.9 129 50.4
Gorai.012G100300 Gossypium raimondii HOM05D003648 ORTHO05D004267 2.0e-19 100.5 134 46.3
Manes.08G043600 Manihot esculenta HOM05D003648 ORTHO05D004267 2.0e-19 100.5 330 31.5
CiPaw.10G026000 Carya illinoinensis HOM05D003648 ORTHO05D004267 2.7e-19 100.1 137 48.2
Haze_20003 Corylus avellana HOM05D003648 ORTHO05D004267 3.5e-19 99.8 374 31.3
FAN09G0401 Fragaria x ananassa HOM05D003648 ORTHO05D004267 3.5e-19 99.8 367 32.2
MD14G1055800 Malus domestica HOM05D003648 ORTHO05D004267 3.5e-19 99.8 380 30.0
Oeu007752.1 Olea europaea HOM05D003648 ORTHO05D004267 4.5e-19 99.4 263 35.4
Lalb_Chr18g0047911 Lupinus albus HOM05D003648 ORTHO05D004267 5.9e-19 99.0 144 45.8
CSS0001516 Camellia sinensis var. sinensis HOM05D003648 ORTHO05D004267 7.7e-19 98.6 128 50.0
Atru.chr8.1128 Acer truncatum HOM05D003648 ORTHO05D004267 1.0e-18 98.2 135 47.4
Cpa.g.sc85.54 Carica papaya HOM05D003648 ORTHO05D004267 1.3e-18 97.8 136 46.3
Gohir.A04G053800 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.3e-18 97.8 360 31.9
Lalb_Chr18g0047921 Lupinus albus HOM05D003648 ORTHO05D004267 1.3e-18 97.8 139 46.0
Medtr7g093360 Medicago truncatula HOM05D003648 ORTHO05D004267 1.3e-18 97.8 169 40.2
Sabra06G0148600 Salix brachista HOM05D003648 ORTHO05D004267 1.3e-18 97.8 322 34.2
TWI77G0250 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 1.7e-18 97.4 331 32.6
Nn7g35986 Nelumbo nucifera HOM05D003648 ORTHO05D004267 2.9e-18 96.7 148 44.6
QL07p024078 Quercus lobata HOM05D003648 ORTHO05D004267 2.9e-18 96.7 143 44.8
CDE05G0371 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 3.8e-18 96.3 105 54.3
RcHm_v2.0_Chr3g0479411 Rosa chinensis HOM05D003648 ORTHO05D004267 3.8e-18 96.3 364 31.3
PGSC0003DMG400023669 Solanum tuberosum HOM05D003648 ORTHO05D004267 3.8e-18 96.3 125 46.4
Aqoxy2G00100 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 5.0e-18 95.9 102 53.9
MSTRG.19911 Avicennia marina HOM05D003648 ORTHO05D004267 6.6e-18 95.5 107 51.4
Duzib093G1879 Durio zibethinus HOM05D003648 ORTHO05D004267 8.6e-18 95.1 384 31.8
Sabra06G0148400 Salix brachista HOM05D003648 ORTHO05D004267 8.6e-18 95.1 351 31.3
HPP92_016181 Vanilla planifolia HOM05D003648 ORTHO05D004267 1.1e-17 94.7 110 52.7
Ah.04g152510 Amaranthus hybridus HOM05D003648 ORTHO05D004267 1.5e-17 94.4 303 34.7
Gohir.1Z049549 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.5e-17 94.4 109 53.2
Gohir.D04G089900 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.5e-17 94.4 360 31.9
vmacro07898 Vaccinium macrocarpon HOM05D003648 ORTHO05D004267 1.5e-17 94.4 117 50.4
HPP92_026735 Vanilla planifolia HOM05D003648 ORTHO05D004267 1.5e-17 94.4 124 50.0
DCAR_017003 Daucus carota HOM05D003648 ORTHO05D004267 2.5e-17 93.6 56 75.0
Dinv16371 Davidia involucrata HOM05D003648 ORTHO05D004267 2.5e-17 93.6 146 41.8
Duzib128G0816 Durio zibethinus HOM05D003648 ORTHO05D004267 2.5e-17 93.6 374 30.2
arahy.Tifrunner.gnm1.ann1.SE7UXR Arachis hypogaea HOM05D003648 ORTHO05D004267 3.3e-17 93.2 164 41.5
Nitab4.5_0003600g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 3.3e-17 93.2 181 38.7
MSTRG.6486 Avicennia marina HOM05D003648 ORTHO05D004267 4.2e-17 92.8 102 52.0
Dinv24064 Davidia involucrata HOM05D003648 ORTHO05D004267 4.2e-17 92.8 112 49.1
Medtr7g093350 Medicago truncatula HOM05D003648 ORTHO05D004267 4.2e-17 92.8 169 40.2
EL10Ac3g06898 Beta vulgaris HOM05D003648 ORTHO05D004267 5.5e-17 92.4 335 33.1
Hma1.2p1_0431F.1_g151600 Hydrangea macrophylla HOM05D003648 ORTHO05D004267 7.2e-17 92.0 212 34.9
arahy.Tifrunner.gnm1.ann1.AL1Y46 Arachis hypogaea HOM05D003648 ORTHO05D004267 9.5e-17 91.7 157 42.0
HanXRQChr10g0289891 Helianthus annuus HOM05D003648 ORTHO05D004267 9.5e-17 91.7 130 45.4
Lj5g0018704 Lotus japonicus HOM05D003648 ORTHO05D004267 9.5e-17 91.7 72 66.7
COL.COLO4_29331 Corchorus olitorius HOM05D003648 ORTHO05D004267 1.2e-16 91.3 398 31.9
DCAR_013539 Daucus carota HOM05D003648 ORTHO05D004267 1.2e-16 91.3 172 39.5
TAR633G0715 Trochodendron aralioides HOM05D003648 ORTHO05D004267 1.2e-16 91.3 126 48.4
arahy.Tifrunner.gnm1.ann1.DZ4RFW Arachis hypogaea HOM05D003648 ORTHO05D004267 1.6e-16 90.9 128 44.5
Dinv14314 Davidia involucrata HOM05D003648 ORTHO05D004267 1.6e-16 90.9 58 70.7
Migut.J01846 Erythranthe guttata HOM05D003648 ORTHO05D004267 2.1e-16 90.5 120 47.5
Solyc10g080530.2 Solanum lycopersicum HOM05D003648 ORTHO05D004267 2.1e-16 90.5 124 45.2
Thecc.05G173300 Theobroma cacao HOM05D003648 ORTHO05D004267 2.1e-16 90.5 390 29.5
Haze_20001 Corylus avellana HOM05D003648 ORTHO05D004267 3.6e-16 89.7 391 29.9
ECA247G1467 Erigeron canadensis HOM05D003648 ORTHO05D004267 3.6e-16 89.7 143 39.9
CAN.G128.46 Capsicum annuum HOM05D003648 ORTHO05D004267 6.1e-16 89.0 129 43.4
Actinidia32398 Actinidia chinensis HOM05D003648 ORTHO05D004267 8.0e-16 88.6 294 32.7
Psat3g068040 Pisum sativum HOM05D003648 ORTHO05D004267 8.0e-16 88.6 50 84.0
AUR62015354 Chenopodium quinoa HOM05D003648 ORTHO05D004267 1.8e-15 87.4 112 49.1
CANSAT64G1307 Cannabis sativa HOM05D003648 ORTHO05D004267 2.3e-15 87.0 453 30.0
CAN.G128.47 Capsicum annuum HOM05D003648 ORTHO05D004267 2.3e-15 87.0 126 42.9
GSVIVG01033479001 Vitis vinifera HOM05D003648 ORTHO05D004267 3.0e-15 86.7 303 33.0
MD12G1056100 Malus domestica HOM05D003648 ORTHO05D004267 4.0e-15 86.3 287 30.3
Nitab4.5_0006890g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 4.0e-15 86.3 200 34.5
MBI19_g43859_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 5.2e-15 85.9 56 69.6
Nn2g15714 Nelumbo nucifera HOM05D003648 ORTHO05D004267 6.8e-15 85.5 125 43.2
arahy.Tifrunner.gnm1.ann1.D8BKSU Arachis hypogaea HOM05D003648 ORTHO05D004267 1.5e-14 84.3 329 32.2
CDE11G0439 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 1.5e-14 84.3 49 77.6
MBI13_g32435_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 1.5e-14 84.3 56 67.9
Rhsim03G0005500 Rhododendron simsii HOM05D003648 ORTHO05D004267 3.4e-14 83.2 248 32.7
TAR623G0235 Trochodendron aralioides HOM05D003648 ORTHO05D004267 3.4e-14 83.2 44 81.8
MBI19_g03064_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 4.4e-14 82.8 49 75.5
Nn7g35998 Nelumbo nucifera HOM05D003648 ORTHO05D004267 7.5e-14 82.0 146 41.8
Psat0s5171g0040 Pisum sativum HOM05D003648 ORTHO05D004267 1.7e-13 80.9 87 48.3
MBI19_g23209_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 2.2e-13 80.5 59 66.1
Nn7g36026 Nelumbo nucifera HOM05D003648 ORTHO05D004267 2.2e-13 80.5 50 70.0
Os02g0773600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 2.2e-13 80.5 51 74.5
Zm00001eb193290 Zea mays HOM05D003648 ORTHO05D004267 3.7e-13 79.7 63 61.9
CDE04G2150 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 8.3e-13 78.6 206 39.3
CDE06G0452 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 2.4e-12 77.0 199 40.7
Os06g0207600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 3.2e-12 76.6 40 82.5
ATR0598G173 Amborella trichopoda HOM05D003648 ORTHO05D004267 4.1e-12 76.3 91 46.2
SEGI_21966 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 2.7e-11 73.6 45 68.9
SEGI_09004 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 2.9e-10 70.1 67 50.7
SalBow6G7267 Salvia bowleyana HOM05D003648 ORTHO05D004267 6.6e-10 68.9 271 31.0
SEGI_34260 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 4.3e-09 66.2 146 32.9
SEGI_00470 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 5.6e-09 65.9 42 66.7
Actinidia22048 Actinidia chinensis HOM05D003648 ORTHO05D014310 1.2e-08 64.7 112 39.3
SEGI_22789 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.6e-08 64.3 59 50.8
Thecc.05G174100 Theobroma cacao HOM05D014635 ORTHO05D014310 2.1e-08 63.9 123 37.4
Gohir.A01G190633 Gossypium hirsutum HOM05D014635 ORTHO05D014310 1.4e-07 61.2 133 34.6
Dinv36431 Davidia involucrata HOM05D003648 ORTHO05D004267 2.3e-07 60.5 108 36.1
Aqoxy1G04270 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 5.2e-07 59.3 52 53.8
ATR0598G250 Amborella trichopoda HOM05D003648 ORTHO05D004267 8.9e-07 58.5 61 45.9


User provided reference genes

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