Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p23430 Brassica napus HOM05D007490 ORTHO05D008750 9.8e-136 486.9 261 100.0
BcaNung06245 Brassica carinata HOM05D007490 ORTHO05D008750 3.5e-109 398.7 231 93.9
BraA03t11560Z Brassica rapa HOM05D007490 ORTHO05D008750 6.0e-109 397.9 230 95.2
BolC3t15167H Brassica oleracea HOM05D007490 ORTHO05D008750 1.1e-105 387.1 220 95.0
C03p27950 Brassica napus HOM05D007490 ORTHO05D008750 2.9e-103 379.0 220 93.6
Thhalv10017790m.g Eutrema salsugineum HOM05D007490 ORTHO05D008750 1.1e-62 244.2 224 68.8
CARHR167640 Cardamine hirsuta HOM05D007490 ORTHO05D008750 1.0e-36 157.9 244 51.2
AL5G39010 Arabidopsis lyrata HOM05D007490 ORTHO05D008750 1.2e-35 154.5 243 48.1
Carub.0005s2428 Capsella rubella HOM05D007490 ORTHO05D008750 1.3e-34 151.0 243 47.3
AT3G57440 Arabidopsis thaliana HOM05D007490 ORTHO05D008750 1.7e-34 150.6 242 48.3
Thhalv10006439m.g Eutrema salsugineum HOM05D007490 ORTHO05D008750 2.7e-32 143.3 246 45.5
BcaC07g40379 Brassica carinata HOM05D007490 ORTHO05D008750 5.6e-30 135.6 236 49.2
A09p50330 Brassica napus HOM05D007490 ORTHO05D008750 1.0e-28 131.3 232 46.6
THA.LOC104804865 Tarenaya hassleriana HOM05D007490 ORTHO05D008750 1.5e-27 127.5 209 47.8
Sp5g05160 Schrenkiella parvula HOM05D007490 ORTHO05D008750 5.8e-27 125.6 241 44.8
BcaC07g40383 Brassica carinata HOM05D007490 ORTHO05D008750 4.3e-22 109.4 233 42.9
BraA09t40485Z Brassica rapa HOM05D014273 ORTHO05D008750 6.2e-21 105.5 209 45.5
Manes.09G021650 Manihot esculenta HOM05D007490 ORTHO05D008750 6.2e-21 105.5 245 38.0
Thecc.05G153900 Theobroma cacao HOM05D007490 ORTHO05D008750 1.1e-20 104.8 230 36.5
Duzib128G0116 Durio zibethinus HOM05D007490 ORTHO05D008750 2.0e-19 100.5 236 36.0
CsaV3_4G011720 Cucumis sativus L. HOM05D007490 ORTHO05D008750 2.6e-19 100.1 255 38.4
Sed0009481 Sechium edule HOM05D007490 ORTHO05D008750 1.1e-17 94.7 271 32.1
QL07p000297 Quercus lobata HOM05D007490 ORTHO05D008750 1.9e-17 94.0 253 34.8
COL.COLO4_28277 Corchorus olitorius HOM05D007490 ORTHO05D008750 5.4e-17 92.4 229 35.4
Dinv39599 Davidia involucrata HOM05D007490 ORTHO05D008750 4.6e-16 89.4 234 35.9
MD12G1073500 Malus domestica HOM05D007490 ORTHO05D008750 4.6e-16 89.4 251 35.9
Atru.chr1.1094 Acer truncatum HOM05D007490 ORTHO05D008750 1.7e-15 87.4 248 35.9
Glyma.02G183950 Glycine max HOM05D007490 ORTHO05D008750 3.0e-15 86.7 258 34.9
Hma1.2p1_2266F.1_g318420 Hydrangea macrophylla HOM05D007490 ORTHO05D008750 5.1e-15 85.9 144 41.0
ClCG00G005730 Citrullus lanatus HOM05D007490 ORTHO05D008750 6.6e-15 85.5 152 38.8
Ciclev10005740m.g Citrus clementina HOM05D007490 ORTHO05D008750 8.6e-15 85.1 238 36.1
Sc13g0001780 Simmondsia chinensis HOM05D007490 ORTHO05D008750 1.5e-14 84.3 105 45.7
Lsat_1_v5_gn_8_81320 Lactuca sativa HOM05D007490 ORTHO05D008750 5.6e-14 82.4 232 37.9
CANSAT80G2830 Cannabis sativa HOM05D007490 ORTHO05D008750 7.3e-14 82.0 248 35.1
Eucgr.A02350 Eucalyptus grandis HOM05D007490 ORTHO05D008750 1.2e-13 81.3 165 38.2
FAN14G3182 Fragaria x ananassa HOM05D007490 ORTHO05D008750 3.6e-13 79.7 116 47.4
BolC8t50896H Brassica oleracea HOM05D014273 ORTHO05D041832 8.1e-13 78.6 165 43.6
Gohir.D11G329000 Gossypium hirsutum HOM05D007490 ORTHO05D008750 1.1e-12 78.2 139 39.6
Gorai.007G360400 Gossypium raimondii HOM05D007490 ORTHO05D008750 1.1e-12 78.2 139 39.6
SGA_v2.0_scaffold273G46437 Striga asiatica HOM05D007490 ORTHO05D008750 1.1e-12 78.2 220 35.9
TWI74G0148 Tripterygium wilfordii HOM05D007490 ORTHO05D008750 1.4e-12 77.8 116 48.3
FAN09G1636 Fragaria x ananassa HOM05D007490 ORTHO05D008750 1.8e-12 77.4 120 42.5
Rhsim03G0021300 Rhododendron simsii HOM05D007490 ORTHO05D008750 1.8e-12 77.4 192 35.4
Gohir.A11G312500 Gossypium hirsutum HOM05D007490 ORTHO05D008750 2.3e-12 77.0 172 35.5
VMungo0720G0884 Vigna mungo HOM05D007490 ORTHO05D008750 4.0e-12 76.3 224 35.7
arahy.Tifrunner.gnm1.ann1.M65R33 Arachis hypogaea HOM05D007490 ORTHO05D008750 5.2e-12 75.9 268 34.7
RcHm_v2.0_Chr3g0482221 Rosa chinensis HOM05D007490 ORTHO05D008750 6.8e-12 75.5 73 56.2
Cpa.g.sc92.48 Carica papaya HOM05D007490 ORTHO05D008750 2.6e-11 73.6 210 37.6
FvH4_6g23771 Fragaria vesca HOM05D007490 ORTHO05D008750 3.4e-11 73.2 205 34.6
Ah.04g151770 Amaranthus hybridus HOM05D007490 ORTHO05D008750 4.4e-11 72.8 255 34.5
Haze_19861 Corylus avellana HOM05D007490 ORTHO05D008750 4.4e-11 72.8 230 36.5
Phvul.007G252900 Phaseolus vulgaris HOM05D007490 ORTHO05D008750 4.4e-11 72.8 228 34.6
unitig_0.g2659 Utricularia gibba HOM05D007490 ORTHO05D008750 4.4e-11 72.8 225 32.0
DCAR_013600 Daucus carota HOM05D007490 ORTHO05D008750 5.8e-11 72.4 233 35.6
Aqoxy5G00272 Aquilegia oxysepala HOM05D007490 ORTHO05D008750 1.7e-10 70.9 169 32.5
CiPaw.09G038000 Carya illinoinensis HOM05D007490 ORTHO05D008750 1.7e-10 70.9 236 33.5
SalBow3G0554 Salvia bowleyana HOM05D007490 ORTHO05D008750 1.7e-10 70.9 249 30.9
arahy.Tifrunner.gnm1.ann1.QGQ977 Arachis hypogaea HOM05D007490 ORTHO05D008750 2.9e-10 70.1 68 50.0
Cc06_g17080 Coffea canephora HOM05D007490 ORTHO05D008750 2.9e-10 70.1 79 49.4
PGR004G2251 Punica granatum HOM05D007490 ORTHO05D008750 2.9e-10 70.1 179 35.2
Nn7g36272 Nelumbo nucifera HOM05D007490 ORTHO05D008750 3.8e-10 69.7 206 30.1
SGA_v2.0_scaffold94G28485 Striga asiatica HOM05D007490 ORTHO05D008750 4.9e-10 69.3 233 32.2
AUR62026035 Chenopodium quinoa HOM05D007490 ORTHO05D008750 1.1e-09 68.2 61 60.7
Potri.006G050900 Populus trichocarpa HOM05D007490 ORTHO05D008750 1.4e-09 67.8 205 32.7
Rhsim03G0022200 Rhododendron simsii HOM05D007490 ORTHO05D008750 1.4e-09 67.8 228 30.7
PGSC0003DMG400027275 Solanum tuberosum HOM05D007490 ORTHO05D008750 1.9e-09 67.4 116 40.5
Sopen10g030750 Solanum pennellii HOM05D015445 ORTHO05D008750 2.4e-09 67.0 158 31.0
Prupe.7G061400 Prunus persica HOM05D007490 ORTHO05D008750 3.2e-09 66.6 253 34.0
AUR62024445 Chenopodium quinoa HOM05D007490 ORTHO05D008750 4.1e-09 66.2 60 60.0
Solyc04g015730.3 Solanum lycopersicum HOM05D007490 ORTHO05D008750 4.1e-09 66.2 65 52.3
MD14G1067100 Malus domestica HOM05D007490 ORTHO05D008750 7.1e-09 65.5 78 48.7
SHI15744 Sapria himalayana HOM05D007490 ORTHO05D008750 7.1e-09 65.5 245 32.2
THA.LOC104824305 Tarenaya hassleriana HOM05D007490 ORTHO05D008750 2.7e-08 63.5 140 42.1
SEGI_14290 Sequoiadendron giganteum HOM05D007490 ORTHO05D008750 3.5e-08 63.2 111 38.7
SEGI_34104 Sequoiadendron giganteum HOM05D007490 ORTHO05D008750 3.5e-08 63.2 111 38.7
Nitab4.5_0005611g0010 Nicotiana tabacum HOM05D007490 ORTHO05D008750 6.0e-08 62.4 140 35.7
Aqoxy3G01571 Aquilegia oxysepala HOM05D007490 ORTHO05D008750 1.3e-07 61.2 93 43.0
Oeu033005.1 Olea europaea HOM05D007490 ORTHO05D008750 1.3e-07 61.2 212 32.5
Sabra06G0035600 Salix brachista HOM05D007490 ORTHO05D008750 2.3e-07 60.5 245 31.8
Sopen04g007810 Solanum pennellii HOM05D007490 ORTHO05D008750 3.0e-07 60.1 144 36.1
PSO339G3404 Papaver somniferum HOM05D007490 ORTHO05D008750 3.9e-07 59.7 177 33.3
SEGI_24459 Sequoiadendron giganteum HOM05D007490 ORTHO05D008750 6.6e-07 58.9 86 44.2
Medtr0100s0190 Medicago truncatula HOM05D007490 ORTHO05D008750 8.6e-07 58.5 218 33.0
TPR.G10631 Trifolium pratense HOM05D007490 ORTHO05D008750 8.6e-07 58.5 225 32.4
Migut.K00089 Erythranthe guttata HOM05D007490 ORTHO05D008750 2.5e-06 57.0 220 30.0
Psat6g119920 Pisum sativum HOM05D007490 ORTHO05D008750 3.3e-06 56.6 227 34.4
PSO384G3220 Papaver somniferum HOM05D007490 ORTHO05D008750 7.3e-06 55.5 156 34.6


User provided reference genes

Program Settings