Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p22930 Brassica napus HOM05D007120 ORTHO05D008881 8.4e-27 122.9 59 100.0
BolC3t15101H Brassica oleracea HOM05D007120 ORTHO05D008881 8.4e-27 122.9 59 100.0
BraA03t11516Z Brassica rapa HOM05D007120 ORTHO05D008881 8.4e-27 122.9 59 100.0
BcaB01g03516 Brassica carinata HOM05D007120 ORTHO05D008881 6.0e-25 116.7 59 98.3
Sp4g23080 Schrenkiella parvula HOM05D007120 ORTHO05D008881 3.1e-21 104.4 54 90.7
C04p68540 Brassica napus HOM05D007120 ORTHO05D008881 1.5e-20 102.1 54 88.9
BolC4t28353H Brassica oleracea HOM05D007120 ORTHO05D008881 1.5e-20 102.1 54 88.9
A04p31140 Brassica napus HOM05D007120 ORTHO05D008881 3.4e-20 100.9 54 87.0
BraA04t18569Z Brassica rapa HOM05D007120 ORTHO05D008881 3.4e-20 100.9 54 87.0
Thhalv10017507m.g Eutrema salsugineum HOM05D007120 ORTHO05D008881 1.1e-18 95.9 55 80.0
Carub.0004s2306 Capsella rubella HOM05D007120 ORTHO05D008881 1.4e-18 95.5 56 80.4
CARHR135860 Cardamine hirsuta HOM05D007120 ORTHO05D008881 4.2e-18 94.0 56 78.6
AL4G38650 Arabidopsis lyrata HOM05D007120 ORTHO05D008881 1.6e-17 92.0 56 76.8
AT2G40765 Arabidopsis thaliana HOM05D007120 ORTHO05D008881 1.6e-17 92.0 56 76.8
BcaC02g12732 Brassica carinata HOM05D007120 ORTHO05D008881 2.7e-17 91.3 59 76.3
A05p01890 Brassica napus HOM05D007120 ORTHO05D008881 2.7e-17 91.3 59 76.3
C04p02230 Brassica napus HOM05D007120 ORTHO05D008881 3.6e-17 90.9 59 76.3
BolC4t21869H Brassica oleracea HOM05D007120 ORTHO05D008881 3.6e-17 90.9 59 76.3
C01p26040 Brassica napus HOM05D007120 ORTHO05D008881 1.0e-16 89.4 59 72.9
C04p16380 Brassica napus HOM05D007120 ORTHO05D008881 2.3e-16 88.2 46 87.0
BcaC01g05378 Brassica carinata HOM05D015100 ORTHO05D031876 5.7e-15 83.6 42 97.6
C01p18970 Brassica napus HOM05D007120 ORTHO05D008881 7.4e-15 83.2 47 85.1
C03p27210 Brassica napus HOM05D015100 ORTHO05D031876 2.2e-14 81.6 40 100.0
TAR369G0939 Trochodendron aralioides HOM05D007120 ORTHO05D008881 4.8e-14 80.5 55 61.8
Cc02_g05250 Coffea canephora HOM05D007120 ORTHO05D008881 5.3e-13 77.0 60 60.0
HanXRQChr02g0048061 Helianthus annuus HOM05D007120 ORTHO05D008881 5.3e-13 77.0 55 63.6
Gohir.D13G008000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 9.1e-13 76.3 58 56.9
Gorai.013G008400 Gossypium raimondii HOM05D007120 ORTHO05D008881 2.0e-12 75.1 58 56.9
Duzib128G0262 Durio zibethinus HOM05D007120 ORTHO05D008881 3.4e-12 74.3 57 57.9
Lsat_1_v5_gn_6_11060 Lactuca sativa HOM05D007120 ORTHO05D008881 4.5e-12 73.9 55 58.2
Nn2g10275 Nelumbo nucifera HOM05D007120 ORTHO05D008881 7.7e-12 73.2 54 57.4
PGSC0003DMG400020601 Solanum tuberosum HOM05D007120 ORTHO05D008881 1.3e-11 72.4 55 58.2
Aqoxy4G03269 Aquilegia oxysepala HOM05D007120 ORTHO05D008881 1.7e-11 72.0 59 59.3
CANSAT56G4069 Cannabis sativa HOM05D007120 ORTHO05D008881 1.7e-11 72.0 56 60.7
Cfa001199 Carpinus fangiana HOM05D007120 ORTHO05D008881 1.7e-11 72.0 54 57.4
Haze_17366 Corylus avellana HOM05D006907 ORTHO05D008598 2.2e-11 71.6 54 55.6
Gohir.A13G007800 Gossypium hirsutum HOM05D007120 ORTHO05D008881 2.9e-11 71.2 55 52.7
Lj1A968T57 Lonicera japonica HOM05D007120 ORTHO05D008881 2.9e-11 71.2 57 56.1
Gohir.D06G187000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 3.8e-11 70.9 55 54.5
Gorai.010G219300 Gossypium raimondii HOM05D007120 ORTHO05D008881 3.8e-11 70.9 55 54.5
MD01G1169000 Malus domestica HOM05D007120 ORTHO05D008881 3.8e-11 70.9 49 59.2
HanXRQChr10g0312991 Helianthus annuus HOM05D007120 ORTHO05D008881 5.0e-11 70.5 54 57.4
MD07G1234900 Malus domestica HOM05D007120 ORTHO05D008881 5.0e-11 70.5 49 59.2
Atru.chr12.199 Acer truncatum HOM05D007120 ORTHO05D008881 8.5e-11 69.7 50 64.0
CSS0015321 Camellia sinensis var. sinensis HOM05D007120 ORTHO05D008881 8.5e-11 69.7 51 62.7
Gohir.A06G180100 Gossypium hirsutum HOM05D007120 ORTHO05D008881 8.5e-11 69.7 55 52.7
Solyc03g095730.4 Solanum lycopersicum HOM05D007120 ORTHO05D008881 8.5e-11 69.7 55 58.2
CiPaw.14G049800 Carya illinoinensis HOM05D007120 ORTHO05D008881 1.1e-10 69.3 62 54.8
MD03G1050700 Malus domestica HOM05D007120 ORTHO05D008881 1.1e-10 69.3 54 61.1
Peaxi162Scf00073g02342 Petunia axillaris HOM05D007120 ORTHO05D008881 1.1e-10 69.3 55 60.0
Prupe.2G265200 Prunus persica HOM05D007120 ORTHO05D008881 1.1e-10 69.3 42 64.3
Nn5g26831 Nelumbo nucifera HOM05D007120 ORTHO05D008881 1.9e-10 68.6 49 59.2
GSVIVG01032659001 Vitis vinifera HOM05D007120 ORTHO05D008881 2.5e-10 68.2 52 59.6
Cfa011840 Carpinus fangiana HOM05D007120 ORTHO05D008881 3.2e-10 67.8 58 51.7
Hma1.2p1_0264F.1_g105975 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 3.2e-10 67.8 48 62.5
Hma1.2p1_1805F.1_g303200 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 3.2e-10 67.8 48 62.5
Nitab4.5_0000171g0210 Nicotiana tabacum HOM05D007120 ORTHO05D008881 3.2e-10 67.8 55 54.5
Prupe.6G040200 Prunus persica HOM05D007120 ORTHO05D008881 4.2e-10 67.4 59 52.5
FAN03G2745 Fragaria x ananassa HOM05D007120 ORTHO05D008881 7.2e-10 66.6 50 62.0
RcHm_v2.0_Chr7g0235281 Rosa chinensis HOM05D007120 ORTHO05D008881 7.2e-10 66.6 56 58.9
RcHm_v2.0_Chr7g0235311 Rosa chinensis HOM05D007120 ORTHO05D008881 7.2e-10 66.6 56 58.9
Migut.F00570 Erythranthe guttata HOM05D007120 ORTHO05D008881 9.4e-10 66.2 60 48.3
Manes.10G002800 Manihot esculenta HOM05D007120 ORTHO05D008881 9.4e-10 66.2 51 62.7
Potri.019G059500 Populus trichocarpa HOM05D007120 ORTHO05D008881 9.4e-10 66.2 58 55.2
RcHm_v2.0_Chr1g0372461 Rosa chinensis HOM05D007120 ORTHO05D008881 9.4e-10 66.2 56 58.9
MSTRG.27254 Avicennia marina HOM05D007120 ORTHO05D008881 1.2e-09 65.9 51 58.8
FvH4_7g26050 Fragaria vesca HOM05D007120 ORTHO05D008881 1.2e-09 65.9 59 57.6
FAN10G2835 Fragaria x ananassa HOM05D007120 ORTHO05D008881 1.2e-09 65.9 59 57.6
ATR1127G135 Amborella trichopoda HOM05D007120 ORTHO05D008881 1.6e-09 65.5 52 57.7
Oeu006064.1 Olea europaea HOM05D007120 ORTHO05D008881 2.1e-09 65.1 57 49.1
FAN21G2234 Fragaria x ananassa HOM05D007120 ORTHO05D008881 3.6e-09 64.3 55 50.9
Thecc.10G184500 Theobroma cacao HOM05D007120 ORTHO05D008881 3.6e-09 64.3 55 49.1
CAN.G1229.12 Capsicum annuum HOM05D007120 ORTHO05D008881 4.7e-09 63.9 55 52.7
Dinv34497 Davidia involucrata HOM05D006907 ORTHO05D008598 4.7e-09 63.9 45 55.6
DCAR_014662 Daucus carota HOM05D007120 ORTHO05D008881 6.1e-09 63.5 49 57.1
FAN11G0923 Fragaria x ananassa HOM05D007120 ORTHO05D008881 6.1e-09 63.5 55 50.9
Os07g0680300 Oryza sativa ssp. japonica HOM05D007120 ORTHO05D008881 1.0e-08 62.8 58 50.0
CiPaw.09G151000 Carya illinoinensis HOM05D007120 ORTHO05D008881 1.4e-08 62.4 53 50.9
Phvul.009G043000 Phaseolus vulgaris HOM05D007120 ORTHO05D008881 1.8e-08 62.0 45 55.6
MBI15_g39383_MAGBIO Magnolia biondii HOM05D007120 ORTHO05D008881 2.3e-08 61.6 56 51.8
Lalb_Chr11g0067731 Lupinus albus HOM05D007120 ORTHO05D008881 3.9e-08 60.8 47 53.2
Lalb_Chr23g0272151 Lupinus albus HOM05D007120 ORTHO05D008881 3.9e-08 60.8 47 53.2
Lj1g0003388 Lotus japonicus HOM05D007120 ORTHO05D008881 5.1e-08 60.5 47 51.1
Manes.07G142200 Manihot esculenta HOM05D007120 ORTHO05D008881 6.7e-08 60.1 50 54.0
Hund13439 Selenicereus undatus HOM05D007120 ORTHO05D008881 6.7e-08 60.1 48 54.2
Glyma.06G141900 Glycine max HOM05D007120 ORTHO05D008881 8.8e-08 59.7 45 48.9
BcaC01g00581 Brassica carinata HOM05D007120 ORTHO05D008881 1.5e-07 58.9 59 55.9
DCAR_018042 Daucus carota HOM05D007120 ORTHO05D008881 2.6e-07 58.2 44 61.4
Glyma.04G223400 Glycine max HOM05D007120 ORTHO05D008881 2.6e-07 58.2 45 48.9
Lalb_Chr08g0239241 Lupinus albus HOM05D007120 ORTHO05D008881 9.7e-07 56.2 47 46.8
Nitab4.5_0000375g0220 Nicotiana tabacum HOM05D007120 ORTHO05D008881 1.3e-06 55.8 67 41.8
Aa31LG3G1380 Aethionema arabicum HOM05D007120 ORTHO05D008881 2.2e-06 55.1 39 74.4
FAN01G0895 Fragaria x ananassa HOM05D007120 ORTHO05D008881 4.8e-06 53.9 76 43.4
Medtr3g093810 Medicago truncatula HOM05D007120 ORTHO05D008881 4.8e-06 53.9 40 55.0


User provided reference genes

Program Settings