Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 5.9e-247 857.1 424 100.0
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 4.8e-241 837.4 425 97.9
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 5.0e-238 827.4 424 96.2
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 4.7e-236 820.8 424 95.3
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 4.7e-236 820.8 424 95.5
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 3.7e-225 784.6 424 90.8
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 1.2e-212 743.0 435 83.2
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 4.6e-207 724.5 439 81.3
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 9.5e-205 716.8 436 80.5
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 4.7e-204 714.5 441 80.3
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 1.8e-203 712.6 436 80.3
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 2.2e-201 705.7 435 79.5
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 4.1e-200 701.4 429 81.4
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 1.6e-199 699.5 429 80.9
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 2.3e-198 695.7 429 80.9
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 3.0e-198 695.3 428 79.4
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 6.6e-198 694.1 425 79.3
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 6.6e-198 694.1 425 79.3
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 4.7e-196 688.0 429 80.0
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 4.7e-196 688.0 429 80.0
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 2.3e-195 685.6 429 80.0
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 3.4e-194 681.8 425 77.9
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 3.4e-194 681.8 425 77.6
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 5.8e-194 681.0 435 75.2
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 3.5e-183 645.2 432 75.5
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 1.5e-178 629.8 437 70.9
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 3.3e-173 612.1 432 69.9
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 2.2e-169 599.4 438 68.5
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 3.8e-169 598.6 431 67.7
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 2.8e-164 582.4 430 66.7
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 2.8e-164 582.4 430 66.7
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 3.1e-163 578.9 432 67.8
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 3.1e-163 578.9 430 66.3
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 6.9e-163 577.8 430 66.3
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 3.4e-162 575.5 432 66.7
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 4.5e-162 575.1 430 66.3
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 4.6e-159 565.1 417 67.1
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 7.1e-152 541.2 467 60.6
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 8.2e-148 527.7 469 59.1
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 1.2e-146 523.9 435 60.0
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 2.6e-146 522.7 466 57.7
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 3.4e-146 522.3 462 59.1
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 3.4e-146 522.3 441 58.7
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 5.9e-146 521.5 463 58.1
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 8.5e-145 517.7 460 58.3
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.1e-144 517.3 460 58.3
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 7.2e-144 514.6 467 58.2
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 1.6e-143 513.5 468 58.3
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.1e-143 513.1 460 58.0
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 4.6e-143 511.9 467 55.7
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 2.3e-142 509.6 463 56.8
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.0e-142 509.2 463 57.2
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 5.1e-142 508.4 466 57.9
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 5.1e-142 508.4 463 57.2
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 6.7e-142 508.1 469 55.2
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 1.1e-141 507.3 467 57.4
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.5e-141 506.9 468 55.3
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 1.9e-141 506.5 463 55.7
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 2.5e-141 506.1 468 54.9
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 2.5e-141 506.1 470 55.5
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 3.3e-141 505.8 467 57.0
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 4.3e-141 505.4 469 55.4
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 5.7e-141 505.0 466 57.5
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 5.7e-141 505.0 467 55.9
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 9.7e-141 504.2 463 57.0
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 1.3e-140 503.8 474 54.2
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.8e-140 502.7 467 56.5
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 8.2e-140 501.1 466 55.8
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 1.1e-139 500.7 463 56.2
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.1e-139 500.7 461 55.7
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 1.4e-139 500.4 474 54.4
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 3.1e-139 499.2 467 55.9
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 4.1e-139 498.8 465 56.1
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 1.2e-138 497.3 445 56.4
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 1.5e-138 496.9 467 55.0
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 5.9e-138 495.0 466 55.2
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 2.2e-137 493.0 443 57.6
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 2.2e-137 493.0 469 54.4
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 3.8e-137 492.3 461 54.9
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 8.5e-137 491.1 472 53.8
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 3.2e-136 489.2 471 53.9
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 1.2e-135 487.3 451 54.3
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 1.4e-134 483.8 447 54.8
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 1.4e-134 483.8 472 53.2
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 3.0e-134 482.6 477 52.8
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 3.0e-134 482.6 465 54.8
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 2.0e-133 479.9 469 52.2
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 4.4e-133 478.8 454 54.4
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 5.7e-133 478.4 467 53.3
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 1.3e-132 477.2 451 54.1
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 6.3e-132 474.9 451 54.5
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 1.1e-131 474.2 466 52.1
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 1.4e-131 473.8 472 52.3
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 4.1e-131 472.2 453 54.1
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 5.3e-131 471.9 446 55.2
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 5.3e-131 471.9 453 54.1
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 9.1e-131 471.1 450 52.0
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 2.6e-130 469.5 432 61.1
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 7.7e-130 468.0 477 51.2
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 6.5e-129 464.9 467 51.8
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 6.5e-129 464.9 448 52.5
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 8.5e-129 464.5 461 52.5
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 1.4e-128 463.8 472 52.8
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 3.2e-128 462.6 461 52.7
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 1.6e-127 460.3 444 54.5
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 3.6e-127 459.1 470 50.4
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 3.6e-127 459.1 473 51.6
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 8.0e-127 458.0 430 57.2
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 5.2e-126 455.3 462 50.0
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 2.0e-125 453.4 459 51.6
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 2.8e-124 449.5 443 52.6
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 6.3e-124 448.4 463 50.5
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 6.3e-124 448.4 468 51.3
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.1e-123 447.6 466 51.3
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 1.4e-123 447.2 462 50.9
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 5.3e-123 445.3 465 50.3
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 5.3e-123 445.3 460 52.6
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 7.7e-122 441.4 460 50.4
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 1.7e-121 440.3 433 51.3
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 5.0e-121 438.7 438 50.7
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 5.0e-121 438.7 438 51.8
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 8.5e-121 438.0 467 48.6
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 1.1e-120 437.6 461 50.1
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 9.4e-120 434.5 443 51.2
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 3.6e-119 432.6 443 50.6
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 3.6e-119 432.6 437 50.1
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 6.1e-119 431.8 435 48.5
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 8.0e-119 431.4 449 49.0
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.0e-118 431.0 456 48.9
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 1.8e-118 430.3 448 50.4
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 1.8e-118 430.3 435 52.0
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 2.0e-117 426.8 450 48.2
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 2.0e-117 426.8 463 48.4
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 5.7e-117 425.2 465 47.3
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 7.5e-117 424.9 439 50.1
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 8.2e-116 421.4 402 53.0
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 2.4e-115 419.9 418 51.0
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 4.1e-115 419.1 407 53.6
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 7.2e-112 408.3 468 47.0
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.4e-107 394.0 401 49.6
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 9.5e-104 381.3 381 51.4
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 9.5e-104 381.3 425 47.3
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 2.1e-103 380.2 436 46.6
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 1.8e-99 367.1 442 43.9
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 7.0e-99 365.2 456 45.2
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 1.7e-97 360.5 425 45.4
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 2.9e-97 359.8 292 59.9
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 2.9e-97 359.8 292 59.9
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 4.6e-90 335.9 427 42.4
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.3e-89 334.3 430 41.9
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 5.0e-89 332.4 430 40.9
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.9e-88 330.5 430 41.6
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 9.5e-88 328.2 476 38.7
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 2.3e-86 323.6 199 79.4
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 3.1e-86 323.2 199 79.4
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 4.7e-79 299.3 419 39.9
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 2.3e-65 253.8 164 77.4
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.8e-62 244.2 335 39.1
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 2.7e-58 230.3 340 44.1
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 8.7e-57 225.3 214 51.9
BcaNung05461 Brassica carinata HOM05D003903 ORTHO05D004828 5.3e-54 216.1 275 50.2
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 8.1e-47 192.2 204 51.0
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 6.4e-44 182.6 210 47.6
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 6.0e-42 176.0 200 46.0
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 4.3e-32 143.3 119 65.5
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 7.7e-29 132.5 84 78.6
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 7.2e-27 125.9 86 75.6
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 1.0e-25 122.1 137 45.3
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 1.0e-25 122.1 330 29.1
BcaC02g07345 Brassica carinata HOM05D003903 ORTHO05D091390 1.5e-16 91.7 108 47.2
BcaC02g07346 Brassica carinata HOM05D003903 ORTHO05D095566 2.4e-14 84.3 60 80.0
C05p20030 Brassica napus HOM05D003903 ORTHO05D004828 8.5e-12 75.9 43 83.7
VMungo0540G2232 Vigna mungo HOM05D003903 ORTHO05D004828 2.8e-07 60.8 139 33.1


User provided reference genes

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