Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p22360 Brassica napus HOM05D006228 ORTHO05D007847 3.5e-247 857.8 435 100.0
BraA03t11466Z Brassica rapa HOM05D006228 ORTHO05D007847 1.1e-232 809.7 416 98.6
BolC3t15036H Brassica oleracea HOM05D006228 ORTHO05D007847 1.8e-222 775.8 416 94.7
C03p26500 Brassica napus HOM05D006228 ORTHO05D007847 4.8e-220 767.7 416 94.7
BcaC01g05454 Brassica carinata HOM05D006228 ORTHO05D007847 8.5e-217 756.9 416 93.8
BcaB01g03579 Brassica carinata HOM05D006228 ORTHO05D007847 6.7e-214 747.3 436 88.1
Sp4g22220 Schrenkiella parvula HOM05D006228 ORTHO05D007847 2.3e-193 679.1 429 82.3
AT2G39910 Arabidopsis thaliana HOM05D006228 ORTHO05D007847 8.3e-188 660.6 423 80.6
AL4G37490 Arabidopsis lyrata HOM05D006228 ORTHO05D007847 4.1e-187 658.3 423 80.1
Thhalv10016686m.g Eutrema salsugineum HOM05D006228 ORTHO05D007847 7.8e-186 654.1 429 79.3
CARHR134830 Cardamine hirsuta HOM05D006228 ORTHO05D007847 1.8e-182 642.9 425 77.6
Carub.0004s2204 Capsella rubella HOM05D006228 ORTHO05D007847 3.4e-181 638.6 424 78.8
Aa31LG5G19710 Aethionema arabicum HOM05D006228 ORTHO05D007847 5.2e-174 614.8 422 75.6
THA.LOC104810050 Tarenaya hassleriana HOM05D006228 ORTHO05D007847 3.1e-158 562.4 423 67.6
Thecc.10G027500 Theobroma cacao HOM05D006228 ORTHO05D007847 2.7e-138 496.1 428 57.9
Manes.10G018500 Manihot esculenta HOM05D006228 ORTHO05D007847 2.1e-135 486.5 431 58.0
TWI09G0225 Tripterygium wilfordii HOM05D006228 ORTHO05D007847 6.2e-135 485.0 423 57.7
Haze_17175 Corylus avellana HOM05D006228 ORTHO05D007847 8.1e-135 484.6 429 56.4
COL.COLO4_25614 Corchorus olitorius HOM05D006228 ORTHO05D007847 5.8e-133 478.4 417 57.3
Prupe.2G245100 Prunus persica HOM05D006228 ORTHO05D007847 5.8e-133 478.4 434 55.3
Gohir.D06G170400 Gossypium hirsutum HOM05D006228 ORTHO05D007847 7.6e-133 478.0 416 57.7
Gorai.010G199300 Gossypium raimondii HOM05D006228 ORTHO05D007847 1.0e-132 477.6 413 57.6
Potri.008G063500 Populus trichocarpa HOM05D006228 ORTHO05D007847 1.7e-132 476.9 431 56.8
RcHm_v2.0_Chr1g0369221 Rosa chinensis HOM05D006228 ORTHO05D007847 3.8e-132 475.7 420 57.1
Dinv34431 Davidia involucrata HOM05D006228 ORTHO05D007847 1.1e-131 474.2 426 55.9
TAR633G1830 Trochodendron aralioides HOM05D006228 ORTHO05D007847 7.9e-130 468.0 427 54.1
Gohir.A06G164900 Gossypium hirsutum HOM05D006228 ORTHO05D007847 1.8e-129 466.8 413 56.7
GSVIVG01016380001 Vitis vinifera HOM05D006228 ORTHO05D007847 1.1e-128 464.2 425 54.1
Cfa005508 Carpinus fangiana HOM05D006228 ORTHO05D007847 1.5e-128 463.8 434 53.9
Actinidia13913 Actinidia chinensis HOM05D006228 ORTHO05D007847 2.5e-128 463.0 430 52.8
CiPaw.01G295100 Carya illinoinensis HOM05D006228 ORTHO05D007847 4.3e-128 462.2 431 54.1
CSS0000174 Camellia sinensis var. sinensis HOM05D006228 ORTHO05D007847 6.2e-127 458.4 425 53.4
FAN03G1418 Fragaria x ananassa HOM05D006228 ORTHO05D007847 1.1e-126 457.6 417 55.2
MD07G1212900 Malus domestica HOM05D006228 ORTHO05D007847 1.4e-126 457.2 425 53.6
CSS0026214 Camellia sinensis var. sinensis HOM05D006228 ORTHO05D007847 5.3e-126 455.3 425 53.4
AUR62022833 Chenopodium quinoa HOM05D006228 ORTHO05D007847 9.0e-126 454.5 424 55.0
FvH4_7g23870 Fragaria vesca HOM05D006228 ORTHO05D007847 2.6e-125 453.0 422 54.7
Migut.F00709 Erythranthe guttata HOM05D006228 ORTHO05D007847 3.4e-125 452.6 434 53.2
FAN01G0169 Fragaria x ananassa HOM05D006228 ORTHO05D007847 2.9e-124 449.5 421 54.4
FAN06G4757 Fragaria x ananassa HOM05D006228 ORTHO05D007847 2.9e-124 449.5 421 54.4
Rhsim09G0171700 Rhododendron simsii HOM05D006228 ORTHO05D007847 4.2e-123 445.7 461 51.6
Hund13827 Selenicereus undatus HOM05D006228 ORTHO05D007847 5.5e-123 445.3 470 49.6
PSO384G3635 Papaver somniferum HOM05D006228 ORTHO05D007847 2.1e-122 443.4 415 52.3
CsaV3_5G008840 Cucumis sativus L. HOM05D006228 ORTHO05D007847 3.5e-122 442.6 419 55.1
Aqoxy1G00736 Aquilegia oxysepala HOM05D006228 ORTHO05D007847 7.9e-122 441.4 408 53.4
EL10Ac2g04780 Beta vulgaris HOM05D006228 ORTHO05D007847 7.9e-122 441.4 428 53.0
MBI14_g08147_MAGBIO Magnolia biondii HOM05D006228 ORTHO05D007847 3.9e-121 439.1 417 54.4
Nn2g13585 Nelumbo nucifera HOM05D006228 ORTHO05D007847 8.7e-121 438.0 421 52.0
Solyc06g009690.3 Solanum lycopersicum HOM05D006228 ORTHO05D007847 8.7e-121 438.0 444 50.0
ClCG11G010510 Citrullus lanatus HOM05D006228 ORTHO05D007847 1.1e-120 437.6 418 53.8
AUR62012200 Chenopodium quinoa HOM05D006228 ORTHO05D007847 1.5e-120 437.2 407 54.3
Nitab4.5_0012179g0020 Nicotiana tabacum HOM05D006228 ORTHO05D007847 9.7e-120 434.5 454 49.8
Psat5g127520 Pisum sativum HOM05D006228 ORTHO05D007847 9.7e-120 434.5 429 52.9
PGSC0003DMG400007303 Solanum tuberosum HOM05D006228 ORTHO05D007847 9.7e-120 434.5 439 50.6
Aqoxy3G00589 Aquilegia oxysepala HOM05D006228 ORTHO05D007847 1.3e-119 434.1 408 52.2
Sabra08G0046800 Salix brachista HOM05D006228 ORTHO05D007847 1.3e-119 434.1 427 53.6
Sopen06g004350 Solanum pennellii HOM05D006228 ORTHO05D007847 2.2e-119 433.3 420 51.4
SGA_v2.0_scaffold2G01060 Striga asiatica HOM05D006228 ORTHO05D007847 2.2e-119 433.3 426 52.8
Duzib106G2031 Durio zibethinus HOM05D006228 ORTHO05D007847 8.2e-119 431.4 416 54.6
CAN.G1280.21 Capsicum annuum HOM05D006228 ORTHO05D007847 1.4e-118 430.6 443 49.9
ECA232G3403 Erigeron canadensis HOM05D006228 ORTHO05D007847 6.9e-118 428.3 406 53.9
TPR.G29810 Trifolium pratense HOM05D006228 ORTHO05D007847 1.5e-117 427.2 421 52.5
Sed0002982 Sechium edule HOM05D006228 ORTHO05D007847 4.5e-117 425.6 435 52.4
Glyma.18G031000 Glycine max HOM05D006228 ORTHO05D007847 8.5e-116 421.4 404 53.7
Oeu006660.1 Olea europaea HOM05D006228 ORTHO05D007847 1.1e-115 421.0 432 50.2
Lalb_Chr18g0052781 Lupinus albus HOM05D006228 ORTHO05D007847 7.2e-115 418.3 425 53.2
Medtr3g070010 Medicago truncatula HOM05D006228 ORTHO05D007847 7.2e-115 418.3 428 50.7
Ca_17139_v3 Cicer arietinum L. HOM05D006228 ORTHO05D007847 1.2e-114 417.5 429 51.5
Lj1A949T58 Lonicera japonica HOM05D006228 ORTHO05D007847 1.2e-114 417.5 430 48.6
Nitab4.5_0000278g0180 Nicotiana tabacum HOM05D006228 ORTHO05D007847 3.6e-114 416.0 413 51.3
HanXRQChr09g0246891 Helianthus annuus HOM05D006228 ORTHO05D007847 4.6e-114 415.6 412 51.5
Peaxi162Scf00401g00030 Petunia axillaris HOM05D006228 ORTHO05D007847 7.9e-114 414.8 415 51.8
VMungo1383G2528 Vigna mungo HOM05D006228 ORTHO05D007847 5.1e-113 412.1 412 51.7
Atru.chr12.264 Acer truncatum HOM05D006228 ORTHO05D007847 6.7e-113 411.8 363 56.7
Lj6g0016911 Lotus japonicus HOM05D006228 ORTHO05D007847 6.7e-113 411.8 422 51.4
SalBow5G2373 Salvia bowleyana HOM05D006228 ORTHO05D007847 5.7e-112 408.7 402 51.5
Ah.16g103060 Amaranthus hybridus HOM05D006228 ORTHO05D007847 2.2e-111 406.8 422 48.8
Ciclev10031701m.g Citrus clementina HOM05D006228 ORTHO05D007847 1.4e-110 404.1 421 51.8
Lsat_1_v5_gn_9_63220 Lactuca sativa HOM05D006228 ORTHO05D007847 4.1e-110 402.5 401 52.9
MELO3C025144.2 Cucumis melo HOM05D006228 ORTHO05D007847 5.3e-110 402.1 438 50.7
Cc02_g06990 Coffea canephora HOM05D006228 ORTHO05D007847 6.9e-110 401.7 430 49.3
arahy.Tifrunner.gnm1.ann1.H1F5T1 Arachis hypogaea HOM05D006228 ORTHO05D007847 2.6e-109 399.8 436 51.1
FAN10G3493 Fragaria x ananassa HOM05D006228 ORTHO05D007847 1.3e-108 397.5 431 50.1
Phvul.001G239600 Phaseolus vulgaris HOM05D006228 ORTHO05D007847 3.8e-108 396.0 410 52.0
PGR044G0451 Punica granatum HOM05D006228 ORTHO05D007847 2.5e-107 393.3 428 49.5
Sc11g0007370 Simmondsia chinensis HOM05D006228 ORTHO05D007847 2.1e-106 390.2 366 52.5
Hma1.2p1_0026F.1_g016930 Hydrangea macrophylla HOM05D006228 ORTHO05D007847 2.7e-106 389.8 297 62.0
SHI03521 Sapria himalayana HOM05D006228 ORTHO05D007847 2.6e-104 383.3 423 48.5
Zm00001eb226270 Zea mays HOM05D006228 ORTHO05D007847 7.4e-104 381.7 401 48.9
ATR0580G418 Amborella trichopoda HOM05D006228 ORTHO05D007847 2.8e-103 379.8 402 50.0
DCAR_011778 Daucus carota HOM05D006228 ORTHO05D007847 4.5e-101 372.5 424 47.2
vmacro10067 Vaccinium macrocarpon HOM05D006228 ORTHO05D007847 7.7e-101 371.7 471 45.4
PSO585G0034 Papaver somniferum HOM05D006228 ORTHO05D007847 3.8e-100 369.4 293 57.7
Os06g0694100 Oryza sativa ssp. japonica HOM05D006228 ORTHO05D007847 8.5e-100 368.2 401 47.1
BcaC02g07378 Brassica carinata HOM05D006228 ORTHO05D007847 3.7e-95 352.8 242 76.0
arahy.Tifrunner.gnm1.ann1.PGVU2S Arachis hypogaea HOM05D006228 ORTHO05D007847 1.1e-91 341.3 360 52.8
Eucgr.J00246 Eucalyptus grandis HOM05D006228 ORTHO05D007847 1.5e-91 340.9 429 45.2
unitig_747.g21715 Utricularia gibba HOM05D006228 ORTHO05D007847 1.4e-89 334.3 427 43.3
BcaB06g29116 Brassica carinata HOM05D006228 ORTHO05D007847 5.7e-88 328.9 434 49.8
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 1.5e-83 314.3 329 48.0
SEGI_03712 Sequoiadendron giganteum HOM05D006228 ORTHO05D007847 3.2e-83 313.2 423 39.2
FAN06G0021 Fragaria x ananassa HOM05D006228 ORTHO05D007847 2.0e-80 303.9 299 53.2
Cpa.g.sc19.228 Carica papaya HOM05D006228 ORTHO05D007847 3.0e-73 280.0 428 40.0
AagrBONN_evm.TU.Sc2ySwM_344.5121 Anthoceros agrestis HOM05D006228 ORTHO05D007847 6.0e-53 212.6 385 32.7
Pp3c11_8050 Physcomitrium patens HOM05D006228 ORTHO05D007847 1.0e-52 211.8 279 39.1
BolC4t28269H Brassica oleracea HOM05D006228 ORTHO05D007847 2.8e-50 203.8 162 66.7
Mapoly0014s0032 Marchantia polymorpha HOM05D006228 ORTHO05D007847 2.8e-50 203.8 291 37.1
RcHm_v2.0_Chr2g0110551 Rosa chinensis HOM05D006228 ORTHO05D007847 1.5e-48 198.0 153 60.1
QL08p062537 Quercus lobata HOM05D006228 ORTHO05D007847 2.6e-48 197.2 143 61.5
SMO273G0042 Selaginella moellendorffii HOM05D006228 ORTHO05D007847 1.1e-46 191.8 254 40.9
HPP92_018568 Vanilla planifolia HOM05D006228 ORTHO05D007847 1.4e-46 191.4 256 44.1
Sed0008304 Sechium edule HOM05D006228 ORTHO05D007847 2.4e-46 190.7 377 36.6
Actinidia00930 Actinidia chinensis HOM05D006228 ORTHO05D007847 1.2e-42 178.3 144 57.6
HPP92_018569 Vanilla planifolia HOM05D006228 ORTHO05D007847 1.7e-39 167.9 148 52.7
MSTRG.8975 Avicennia marina HOM05D006228 ORTHO05D007847 4.9e-39 166.4 224 43.8
RcHm_v2.0_Chr1g0339731 Rosa chinensis HOM05D006228 ORTHO05D007847 9.3e-38 162.2 153 54.2
SMO147G0063 Selaginella moellendorffii HOM05D006228 ORTHO05D007847 5.8e-32 142.9 254 35.0
Actinidia25353 Actinidia chinensis HOM05D006228 ORTHO05D007847 1.7e-31 141.4 159 47.8
C04p67680 Brassica napus HOM05D006228 ORTHO05D007847 1.9e-22 111.3 162 45.1
arahy.Tifrunner.gnm1.ann1.DSNI2G Arachis hypogaea HOM05D002669 ORTHO05D003001 4.9e-15 86.7 58 63.8
arahy.Tifrunner.gnm1.ann1.YTZ5F3 Arachis hypogaea HOM05D006228 ORTHO05D007847 8.4e-15 85.9 58 63.8
MCO16G020 Micromonas commoda HOM05D006228 ORTHO05D007847 9.3e-14 82.4 254 23.2
PRCOL_00002967 Prasinoderma coloniale HOM05D006228 ORTHO05D007847 9.0e-09 65.9 184 25.0


User provided reference genes

Program Settings