Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p21550 Brassica napus HOM05D005215 ORTHO05D006382 5.2e-142 507.7 251 100.0
BraA03t11391Z Brassica rapa HOM05D005215 ORTHO05D006382 3.0e-121 438.7 215 98.1
BolC3t14941H Brassica oleracea HOM05D005215 ORTHO05D006382 3.9e-121 438.3 215 97.2
C03p25540 Brassica napus HOM05D005215 ORTHO05D006382 1.1e-120 436.8 215 96.7
Sp4g21070 Schrenkiella parvula HOM05D005215 ORTHO05D006382 2.7e-114 415.6 214 93.5
CARHR133400 Cardamine hirsuta HOM05D005215 ORTHO05D006382 2.3e-113 412.5 211 92.4
Thhalv10017213m.g Eutrema salsugineum HOM05D005215 ORTHO05D006382 1.9e-112 409.5 221 90.0
BcaC02g07452 Brassica carinata HOM05D005215 ORTHO05D006382 1.6e-111 406.4 208 93.3
Carub.0004s2071 Capsella rubella HOM05D005215 ORTHO05D006382 3.6e-111 405.2 211 91.9
C04p66830 Brassica napus HOM05D005215 ORTHO05D006382 2.3e-110 402.5 219 89.0
BraA04t18418Z Brassica rapa HOM05D005215 ORTHO05D006382 3.1e-110 402.1 208 91.8
AT2G38710 Arabidopsis thaliana HOM05D005215 ORTHO05D006382 4.0e-110 401.7 211 91.0
BolC4t28184H Brassica oleracea HOM05D005215 ORTHO05D006382 6.8e-110 401.0 208 91.8
AL4G36010 Arabidopsis lyrata HOM05D005215 ORTHO05D006382 1.5e-109 399.8 211 91.0
THA.LOC104801304 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 4.3e-104 381.7 209 87.6
Aa31LG5G21000 Aethionema arabicum HOM05D005215 ORTHO05D006382 6.2e-103 377.9 212 84.0
THA.LOC104811337 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 6.8e-102 374.4 210 84.3
Cc02_g09580 Coffea canephora HOM05D005215 ORTHO05D006382 3.9e-97 358.6 204 80.4
TWI15G0816 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 3.9e-97 358.6 208 81.2
CiPaw.14G033600 Carya illinoinensis HOM05D005215 ORTHO05D006382 5.1e-97 358.2 208 82.2
CAN.G1417.3 Capsicum annuum HOM05D005215 ORTHO05D006382 1.9e-96 356.3 204 82.4
CiPaw.13G040900 Carya illinoinensis HOM05D005215 ORTHO05D006382 2.5e-96 355.9 208 81.2
Atru.chr12.1046 Acer truncatum HOM05D005215 ORTHO05D006382 4.3e-96 355.1 209 78.9
SGA_v2.0_scaffold329G48861 Striga asiatica HOM05D005215 ORTHO05D006382 4.3e-96 355.1 204 79.9
PGR044G2198 Punica granatum HOM05D005215 ORTHO05D006382 5.6e-96 354.8 208 80.3
EL10Ac4g07754 Beta vulgaris HOM05D005215 ORTHO05D006382 9.6e-96 354.0 204 80.4
QL04p046761 Quercus lobata HOM05D005215 ORTHO05D006382 1.6e-95 353.2 208 78.4
Solyc11g006770.3 Solanum lycopersicum HOM05D005215 ORTHO05D006382 1.6e-95 353.2 204 80.4
Sopen11g002700 Solanum pennellii HOM05D005215 ORTHO05D006382 1.6e-95 353.2 204 80.4
PGSC0003DMG400023967 Solanum tuberosum HOM05D005215 ORTHO05D006382 1.6e-95 353.2 204 80.4
Hma1.2p1_0756F.1_g213190 Hydrangea macrophylla HOM05D005215 ORTHO05D006382 2.1e-95 352.8 208 79.3
SalBow3G3150 Salvia bowleyana HOM05D005215 ORTHO05D006382 2.1e-95 352.8 208 78.8
AUR62042083 Chenopodium quinoa HOM05D005215 ORTHO05D006382 4.8e-95 351.7 204 78.9
Dinv11822 Davidia involucrata HOM05D005215 ORTHO05D006382 8.1e-95 350.9 208 77.9
vmacro07260 Vaccinium macrocarpon HOM05D005215 ORTHO05D006382 8.1e-95 350.9 209 77.0
Thecc.10G114600 Theobroma cacao HOM05D005215 ORTHO05D006382 1.4e-94 350.1 204 80.4
Aqoxy4G02757 Aquilegia oxysepala HOM05D005215 ORTHO05D006382 1.8e-94 349.7 208 77.9
MBI01_g04055_MAGBIO Magnolia biondii HOM05D005215 ORTHO05D006382 1.8e-94 349.7 208 77.9
Manes.18G138580 Manihot esculenta HOM05D005215 ORTHO05D006382 1.8e-94 349.7 209 78.0
GSVIVG01010684001 Vitis vinifera HOM05D005215 ORTHO05D006382 1.8e-94 349.7 200 81.0
Lsat_1_v5_gn_2_104201 Lactuca sativa HOM05D005215 ORTHO05D006382 2.4e-94 349.4 204 79.9
ClCG08G008310 Citrullus lanatus HOM05D005215 ORTHO05D006382 3.1e-94 349.0 204 79.4
Nitab4.5_0009484g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 3.1e-94 349.0 204 79.4
Ciclev10016681m.g Citrus clementina HOM05D005215 ORTHO05D006382 4.0e-94 348.6 208 77.4
Peaxi162Scf00125g00233 Petunia axillaris HOM05D005215 ORTHO05D006382 5.3e-94 348.2 204 79.4
Nitab4.5_0002586g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 6.9e-94 347.8 204 79.4
arahy.Tifrunner.gnm1.ann1.E5H8ET Arachis hypogaea HOM05D005215 ORTHO05D006382 1.2e-93 347.1 204 77.9
Hund06789 Selenicereus undatus HOM05D005215 ORTHO05D006382 1.5e-93 346.7 204 79.4
Sc06g0002380 Simmondsia chinensis HOM05D005215 ORTHO05D006382 1.5e-93 346.7 208 79.3
TWI63G0161 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 2.0e-93 346.3 205 79.0
Lj5g0024589 Lotus japonicus HOM05D005215 ORTHO05D006382 3.4e-93 345.5 196 79.6
Duzib114G0243 Durio zibethinus HOM05D005215 ORTHO05D006382 5.8e-93 344.7 206 77.7
Actinidia18624 Actinidia chinensis HOM05D005215 ORTHO05D006382 7.6e-93 344.4 195 80.0
Nn6g34863 Nelumbo nucifera HOM05D005215 ORTHO05D006382 7.6e-93 344.4 204 76.5
Sed0008445 Sechium edule HOM05D005215 ORTHO05D006382 7.6e-93 344.4 204 78.9
Gorai.009G303500 Gossypium raimondii HOM05D005215 ORTHO05D006382 9.9e-93 344.0 205 77.6
HanXRQChr07g0194041 Helianthus annuus HOM05D005215 ORTHO05D006382 9.9e-93 344.0 204 77.5
Actinidia34727 Actinidia chinensis HOM05D005215 ORTHO05D006382 1.3e-92 343.6 208 76.4
Potri.010G240000 Populus trichocarpa HOM05D005215 ORTHO05D006382 1.7e-92 343.2 204 77.0
CSS0044679 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 3.8e-92 342.0 195 78.5
Gohir.D05G288400 Gossypium hirsutum HOM05D005215 ORTHO05D006382 3.8e-92 342.0 205 77.1
TPR.G2443 Trifolium pratense HOM05D005215 ORTHO05D006382 3.8e-92 342.0 209 73.7
Eucgr.J00268 Eucalyptus grandis HOM05D005215 ORTHO05D006382 4.9e-92 341.7 209 78.0
RcHm_v2.0_Chr7g0197741 Rosa chinensis HOM05D005215 ORTHO05D006382 4.9e-92 341.7 196 78.1
VMungo0720G2906 Vigna mungo HOM05D005215 ORTHO05D006382 4.9e-92 341.7 196 79.1
Migut.F00868 Erythranthe guttata HOM05D005215 ORTHO05D006382 6.4e-92 341.3 208 76.4
Gohir.A05G287300 Gossypium hirsutum HOM05D005215 ORTHO05D006382 6.4e-92 341.3 205 77.1
PSO339G4522 Papaver somniferum HOM05D005215 ORTHO05D006382 8.4e-92 340.9 205 75.6
Psat0s1904g0160 Pisum sativum HOM05D005215 ORTHO05D006382 8.4e-92 340.9 209 74.6
CSS0033765 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 1.4e-91 340.1 208 76.9
Migut.C00229 Erythranthe guttata HOM05D005215 ORTHO05D006382 1.4e-91 340.1 208 76.4
FAN13G0513 Fragaria x ananassa HOM05D005215 ORTHO05D006382 1.4e-91 340.1 199 77.4
Medtr1g111860 Medicago truncatula HOM05D005215 ORTHO05D006382 1.4e-91 340.1 208 75.0
CDE06G1220 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 1.9e-91 339.7 204 74.5
Sed0014754 Sechium edule HOM05D005215 ORTHO05D006382 4.2e-91 338.6 204 77.5
MSTRG.27562 Avicennia marina HOM05D005215 ORTHO05D006382 7.1e-91 337.8 206 75.7
TAR369G1081 Trochodendron aralioides HOM05D005215 ORTHO05D006382 7.1e-91 337.8 209 76.1
Lsat_1_v5_gn_0_8140 Lactuca sativa HOM05D005215 ORTHO05D006382 1.2e-90 337.0 204 77.0
CDE08G0922 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 1.6e-90 336.7 204 73.5
FvH4_5g02370 Fragaria vesca HOM05D005215 ORTHO05D006382 2.1e-90 336.3 199 76.4
FAN04G2904 Fragaria x ananassa HOM05D005215 ORTHO05D006382 2.1e-90 336.3 199 76.4
CANSAT56G3442 Cannabis sativa HOM05D005215 ORTHO05D006382 3.5e-90 335.5 204 77.0
DCAR_006336 Daucus carota HOM05D005215 ORTHO05D006382 3.5e-90 335.5 205 77.1
Migut.B01734 Erythranthe guttata HOM05D005215 ORTHO05D006382 3.5e-90 335.5 208 75.0
HanXRQChr11g0321671 Helianthus annuus HOM05D005215 ORTHO05D006382 3.5e-90 335.5 204 76.0
Prupe.2G069900 Prunus persica HOM05D005215 ORTHO05D006382 4.6e-90 335.1 208 75.0
FAN18G1091 Fragaria x ananassa HOM05D005215 ORTHO05D006382 6.0e-90 334.7 199 75.9
TAR623G0377 Trochodendron aralioides HOM05D005215 ORTHO05D006382 6.0e-90 334.7 204 76.5
arahy.Tifrunner.gnm1.ann1.KL5LPC Arachis hypogaea HOM05D005215 ORTHO05D006382 7.9e-90 334.3 227 70.0
ECA232G3141 Erigeron canadensis HOM05D005215 ORTHO05D006382 7.9e-90 334.3 204 76.0
MD02G1262000 Malus domestica HOM05D005215 ORTHO05D006382 7.9e-90 334.3 204 73.0
Sabra08G0012600 Salix brachista HOM05D005215 ORTHO05D006382 7.9e-90 334.3 204 75.5
Cpa.g.sc704.2 Carica papaya HOM05D005215 ORTHO05D006382 1.3e-89 333.6 190 79.5
PSO384G1677 Papaver somniferum HOM05D005215 ORTHO05D006382 1.7e-89 333.2 205 74.1
Potri.008G019200 Populus trichocarpa HOM05D005215 ORTHO05D006382 1.7e-89 333.2 204 74.0
Glyma.20G074500 Glycine max HOM05D005215 ORTHO05D006382 3.0e-89 332.4 206 74.8
HPP92_020962 Vanilla planifolia HOM05D005215 ORTHO05D006382 3.0e-89 332.4 196 74.0
AUR62041518 Chenopodium quinoa HOM05D005215 ORTHO05D006382 8.7e-89 330.9 227 69.6
Phvul.007G235600 Phaseolus vulgaris HOM05D005215 ORTHO05D006382 1.1e-88 330.5 208 73.1
Glyma.10G123100 Glycine max HOM05D005215 ORTHO05D006382 1.5e-88 330.1 196 76.5
Oeu030225.2 Olea europaea HOM05D005215 ORTHO05D006382 1.9e-88 329.7 214 74.8
SEGI_01358 Sequoiadendron giganteum HOM05D005215 ORTHO05D006382 7.3e-88 327.8 204 75.0
Zm00001eb390460 Zea mays HOM05D005215 ORTHO05D006382 7.3e-88 327.8 205 72.7
ATR0776G030 Amborella trichopoda HOM05D005215 ORTHO05D006382 9.6e-88 327.4 205 74.6
Os10g0573100 Oryza sativa ssp. japonica HOM05D005215 ORTHO05D006382 9.6e-88 327.4 205 72.2
SMO331G0011 Selaginella moellendorffii HOM05D005215 ORTHO05D006382 2.6e-85 319.3 196 72.4
Pp3c3_21710 Physcomitrium patens HOM05D005215 ORTHO05D006382 3.4e-85 318.9 198 71.7
MD07G1058400 Malus domestica HOM05D005215 ORTHO05D006382 5.8e-85 318.2 204 71.1
Mapoly0059s0056 Marchantia polymorpha HOM05D005215 ORTHO05D006382 4.9e-84 315.1 203 70.4
Oeu026607.3 Olea europaea HOM05D005215 ORTHO05D006382 7.1e-83 311.2 294 55.4
PSO801G0072 Papaver somniferum HOM05D005215 ORTHO05D006382 2.1e-82 309.7 203 69.5
AagrBONN_evm.TU.Sc2ySwM_117.3510 Anthoceros agrestis HOM05D005215 ORTHO05D006382 3.5e-82 308.9 203 68.0
PSO339G6572 Papaver somniferum HOM05D005215 ORTHO05D006382 7.9e-82 307.8 203 69.5
Haze_03299 Corylus avellana HOM05D005215 ORTHO05D006382 1.0e-81 307.4 248 62.9
FAN08G2650 Fragaria x ananassa HOM05D005215 ORTHO05D006382 3.9e-81 305.4 200 71.0
Ah.11g047220 Amaranthus hybridus HOM05D005215 ORTHO05D006382 6.2e-79 298.1 205 69.8
Dinv10934 Davidia involucrata HOM05D005215 ORTHO05D006382 6.9e-78 294.7 163 81.0
Lj3A925G70 Lonicera japonica HOM05D005215 ORTHO05D006382 6.9e-78 294.7 176 80.1
MELO3C019899.2 Cucumis melo HOM05D005215 ORTHO05D006382 6.5e-76 288.1 164 81.7
A04p29510 Brassica napus HOM05D005215 ORTHO05D006382 3.2e-75 285.8 142 92.3
COL.COLO4_05151 Corchorus olitorius HOM05D005215 ORTHO05D006382 3.5e-66 255.8 420 39.5
Pp3c4_19060 Physcomitrium patens HOM05D005215 ORTHO05D006382 3.3e-64 249.2 172 68.0
Lalb_Chr06g0166341 Lupinus albus HOM05D005215 ORTHO05D006382 2.2e-63 246.5 142 76.8
Lalb_Chr02g0146211 Lupinus albus HOM05D005215 ORTHO05D006382 8.2e-63 244.6 142 75.4
Nn2g14190 Nelumbo nucifera HOM05D005215 ORTHO05D006382 4.2e-59 232.3 203 56.7
CBR_g39962 Chara braunii HOM05D005215 ORTHO05D006382 3.8e-52 209.1 141 67.4
CsaV3_6G004280 Cucumis sativus L. HOM05D005215 ORTHO05D006382 4.7e-50 202.2 110 80.9
BcaNung04832 Brassica carinata HOM05D005215 ORTHO05D006382 1.0e-49 201.1 105 92.4
Cre03.g146687 Chlamydomonas reinhardtii HOM05D005215 ORTHO05D006382 6.7e-49 198.4 210 48.1
Ca_25655_v3 Cicer arietinum L. HOM05D000113 ORTHO05D001798 3.5e-45 186.0 122 70.5
Haze_26289 Corylus avellana HOM05D005215 ORTHO05D006382 6.5e-44 181.8 221 43.0
Potri.008G019325 Populus trichocarpa HOM05D005215 ORTHO05D006382 3.6e-42 176.0 109 75.2
MCO01G395 Micromonas commoda HOM05D005215 ORTHO05D006382 2.7e-37 159.8 195 42.1
PRCOL_00005793 Prasinoderma coloniale HOM05D005215 ORTHO05D006382 5.0e-36 155.6 143 55.2
unitig_88.g27810 Utricularia gibba HOM05D005215 ORTHO05D006382 1.2e-34 151.0 99 68.7
Sc06g0000010 Simmondsia chinensis HOM05D005215 ORTHO05D006382 1.2e-32 144.4 99 73.7
Dinv02216 Davidia involucrata HOM05D005215 ORTHO05D006382 1.2e-29 134.4 71 81.7
Cfa010328 Carpinus fangiana HOM05D005215 ORTHO05D006382 2.0e-29 133.7 79 75.9
unitig_88.g27811 Utricularia gibba HOM05D005215 ORTHO05D006382 1.1e-19 101.3 63 76.2
Lalb_Chr06g0166351 Lupinus albus HOM05D005215 ORTHO05D006382 1.2e-18 97.8 73 67.1
Sabra16G0322800 Salix brachista HOM05D005215 ORTHO05D006382 8.0e-18 95.1 59 71.2
Lalb_Chr02g0146221 Lupinus albus HOM05D005215 ORTHO05D006382 2.0e-16 90.5 62 72.6
Actinidia27053 Actinidia chinensis HOM05D005215 ORTHO05D006382 4.9e-15 85.9 60 70.0
Peaxi162Scf00959g00416 Petunia axillaris HOM05D005215 ORTHO05D006382 4.7e-10 69.3 40 82.5
Peaxi162Scf00959g00417 Petunia axillaris HOM05D005215 ORTHO05D306904 2.3e-09 67.0 61 63.9
THA.LOC104824416 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 1.5e-08 64.3 43 74.4
GSVIVG01037606001 Vitis vinifera HOM05D005215 ORTHO05D014194 3.4e-08 63.2 32 78.1
Migut.F00867 Erythranthe guttata HOM05D012249 ORTHO05D014194 2.4e-06 57.0 32 71.9


User provided reference genes

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