Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p20380 Brassica napus HOM05D006384 ORTHO05D007917 3.6e-166 588.2 297 100.0
BraA03t11282Z Brassica rapa HOM05D006384 ORTHO05D007917 3.6e-166 588.2 297 100.0
BolC3t14788H Brassica oleracea HOM05D006384 ORTHO05D007917 5.5e-159 564.3 304 95.4
C03p23970 Brassica napus HOM05D006384 ORTHO05D007917 9.4e-159 563.5 305 95.4
BcaC01g05625 Brassica carinata HOM05D006384 ORTHO05D007917 2.6e-156 555.4 305 94.8
BcaB01g03801 Brassica carinata HOM05D006384 ORTHO05D007917 1.7e-147 526.2 309 89.3
Thhalv10016975m.g Eutrema salsugineum HOM05D006384 ORTHO05D007917 1.1e-143 513.5 314 85.0
AT2G37020 Arabidopsis thaliana HOM05D006384 ORTHO05D007917 2.7e-137 492.3 315 82.9
Sp4g19300 Schrenkiella parvula HOM05D006384 ORTHO05D007917 7.3e-135 484.2 312 83.0
AL4G33330 Arabidopsis lyrata HOM05D006384 ORTHO05D007917 4.7e-134 481.5 304 84.2
Carub.0004s1888 Capsella rubella HOM05D006384 ORTHO05D007917 1.5e-132 476.5 303 83.5
CARHR131500 Cardamine hirsuta HOM05D006384 ORTHO05D007917 1.0e-128 463.8 312 79.8
THA.LOC104823480 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 2.3e-112 409.5 297 73.1
THA.LOC104806487 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 4.2e-106 388.7 231 82.7
Aa31LG5G22260 Aethionema arabicum HOM05D006384 ORTHO05D007917 8.7e-104 380.9 223 87.0
Duzib093G1098 Durio zibethinus HOM05D006384 ORTHO05D007917 8.1e-102 374.4 293 66.6
Thecc.05G063500 Theobroma cacao HOM05D006384 ORTHO05D007917 4.0e-101 372.1 293 66.6
Gorai.009G415700 Gossypium raimondii HOM05D006384 ORTHO05D007917 6.9e-101 371.3 300 65.3
CiPaw.10G132500 Carya illinoinensis HOM05D006384 ORTHO05D007917 1.2e-100 370.5 296 66.2
Gohir.A04G072900 Gossypium hirsutum HOM05D006384 ORTHO05D007917 4.4e-100 368.6 297 64.6
Gohir.D04G111800 Gossypium hirsutum HOM05D006384 ORTHO05D007917 9.9e-100 367.5 300 64.7
arahy.Tifrunner.gnm1.ann1.TG2889 Arachis hypogaea HOM05D006384 ORTHO05D007917 4.9e-99 365.2 282 67.7
TWI74G0201 Tripterygium wilfordii HOM05D006384 ORTHO05D007917 4.9e-99 365.2 293 66.9
Haze_20571 Corylus avellana HOM05D006384 ORTHO05D007917 8.4e-99 364.4 307 63.5
QL07p044018 Quercus lobata HOM05D006384 ORTHO05D007917 8.4e-99 364.4 321 61.7
arahy.Tifrunner.gnm1.ann1.FRB5VT Arachis hypogaea HOM05D006384 ORTHO05D007917 2.4e-98 362.8 279 69.2
FAN09G1862 Fragaria x ananassa HOM05D006384 ORTHO05D007917 2.1e-97 359.8 288 67.4
COL.COLO4_26986 Corchorus olitorius HOM05D006384 ORTHO05D001525 3.5e-97 359.0 259 70.3
Hma1.2p1_0205F.1_g087265 Hydrangea macrophylla HOM05D006384 ORTHO05D007917 6.0e-97 358.2 286 66.4
FAN02G0742 Fragaria x ananassa HOM05D006384 ORTHO05D007917 1.3e-96 357.1 287 66.9
FAN14G1974 Fragaria x ananassa HOM05D006384 ORTHO05D007917 1.3e-96 357.1 288 67.4
FAN14G4113 Fragaria x ananassa HOM05D006384 ORTHO05D007917 1.3e-96 357.1 288 67.4
MD12G1115500 Malus domestica HOM05D006384 ORTHO05D007917 1.3e-96 357.1 291 65.6
Peaxi162Scf00488g00042 Petunia axillaris HOM05D006384 ORTHO05D007917 3.0e-96 355.9 240 74.2
Glyma.19G182800 Glycine max HOM05D006384 ORTHO05D007917 6.6e-96 354.8 286 66.4
Prupe.6G234600 Prunus persica HOM05D006384 ORTHO05D007917 1.9e-95 353.2 305 61.6
Sopen10g035590 Solanum pennellii HOM05D006384 ORTHO05D007917 3.3e-95 352.4 294 62.9
Atru.chr8.1840 Acer truncatum HOM05D006384 ORTHO05D007917 4.3e-95 352.1 294 65.3
CAN.G509.15 Capsicum annuum HOM05D006384 ORTHO05D007917 4.3e-95 352.1 285 64.2
SalBow5G1519 Salvia bowleyana HOM05D006384 ORTHO05D007917 4.3e-95 352.1 315 61.3
SalBow5G1643 Salvia bowleyana HOM05D006384 ORTHO05D007917 4.3e-95 352.1 315 61.3
Solyc10g086210.2 Solanum lycopersicum HOM05D006384 ORTHO05D007917 9.6e-95 350.9 294 62.6
TAR369G0955 Trochodendron aralioides HOM05D006384 ORTHO05D007917 1.3e-94 350.5 295 61.7
Potri.006G126200 Populus trichocarpa HOM05D006384 ORTHO05D007917 2.1e-94 349.7 307 61.6
RcHm_v2.0_Chr3g0469981 Rosa chinensis HOM05D006384 ORTHO05D007917 8.1e-94 347.8 296 63.9
Cc06_g04070 Coffea canephora HOM05D006384 ORTHO05D007917 1.8e-93 346.7 300 61.0
Rhsim03G0093600 Rhododendron simsii HOM05D006384 ORTHO05D007917 6.9e-93 344.7 303 62.0
Lalb_Chr20g0112661 Lupinus albus HOM05D006384 ORTHO05D007917 1.2e-92 344.0 277 65.7
GSVIVG01025711001 Vitis vinifera HOM05D006384 ORTHO05D007917 1.5e-92 343.6 215 77.2
Migut.L01690 Erythranthe guttata HOM05D006384 ORTHO05D007917 2.0e-92 343.2 294 62.6
MSTRG.10316 Avicennia marina HOM05D006384 ORTHO05D007917 3.4e-92 342.4 294 61.6
CsaV3_3G035870 Cucumis sativus L. HOM05D006384 ORTHO05D007917 4.5e-92 342.0 302 61.9
Lj1g0002515 Lotus japonicus HOM05D006384 ORTHO05D007917 9.9e-92 340.9 274 66.4
Phvul.001G178300 Phaseolus vulgaris HOM05D006384 ORTHO05D007917 1.7e-91 340.1 295 62.4
SGA_v2.0_scaffold452G51820 Striga asiatica HOM05D006384 ORTHO05D007917 2.2e-91 339.7 294 63.3
Ca_08852_v3 Cicer arietinum L. HOM05D006384 ORTHO05D007917 2.9e-91 339.3 288 64.6
Os10g0443200 Oryza sativa ssp. japonica HOM05D006384 ORTHO05D007917 3.8e-91 339.0 271 64.9
ClCG10G020230 Citrullus lanatus HOM05D006384 ORTHO05D007917 1.1e-90 337.4 297 60.6
MELO3C009346.2 Cucumis melo HOM05D006384 ORTHO05D007917 2.4e-90 336.3 297 61.6
HanXRQChr01g0027531 Helianthus annuus HOM05D006384 ORTHO05D007917 4.2e-90 335.5 278 62.6
Nn2g11540 Nelumbo nucifera HOM05D006384 ORTHO05D007917 4.2e-90 335.5 294 62.2
Lj2A115T51 Lonicera japonica HOM05D006384 ORTHO05D007917 5.4e-90 335.1 293 60.8
VMungo1383G1856 Vigna mungo HOM05D006384 ORTHO05D007917 2.7e-89 332.8 289 62.3
PSO339G6114 Papaver somniferum HOM05D006384 ORTHO05D007917 3.5e-89 332.4 296 59.8
PSO801G0099 Papaver somniferum HOM05D006384 ORTHO05D007917 4.6e-89 332.0 299 58.5
Ah.15g092420 Amaranthus hybridus HOM05D006384 ORTHO05D007917 6.0e-89 331.6 283 59.4
AUR62040461 Chenopodium quinoa HOM05D006384 ORTHO05D007917 7.9e-89 331.3 222 72.1
Psat3g043320 Pisum sativum HOM05D006384 ORTHO05D007917 7.9e-89 331.3 285 63.9
Hund20279 Selenicereus undatus HOM05D006384 ORTHO05D007917 7.9e-89 331.3 297 62.0
Eucgr.A01141 Eucalyptus grandis HOM05D006384 ORTHO05D007917 2.3e-88 329.7 294 60.5
Lsat_1_v5_gn_1_52961 Lactuca sativa HOM05D006384 ORTHO05D007917 3.0e-88 329.3 297 60.9
Sc20g0005270 Simmondsia chinensis HOM05D006384 ORTHO05D007917 6.7e-88 328.2 217 74.2
Oeu016975.2 Olea europaea HOM05D006384 ORTHO05D007917 1.1e-87 327.4 245 66.5
ECA248G2568 Erigeron canadensis HOM05D006384 ORTHO05D007917 1.9e-87 326.6 268 63.4
TPR.G9375 Trifolium pratense HOM05D006384 ORTHO05D007917 2.5e-87 326.2 273 64.8
ATR0680G046 Amborella trichopoda HOM05D006384 ORTHO05D007917 4.3e-87 325.5 212 73.6
DCAR_009302 Daucus carota HOM05D006384 ORTHO05D007917 7.4e-87 324.7 217 71.9
Aqoxy2G01819 Aquilegia oxysepala HOM05D006384 ORTHO05D007917 9.6e-87 324.3 226 71.7
Dinv37301 Davidia involucrata HOM05D006384 ORTHO05D007917 4.0e-85 318.9 287 61.7
VMungo1383G2663 Vigna mungo HOM05D006384 ORTHO05D007917 5.3e-85 318.5 252 66.7
Medtr7g101760 Medicago truncatula HOM05D006384 ORTHO05D007917 6.9e-85 318.2 290 59.7
Sed0012269 Sechium edule HOM05D006384 ORTHO05D007917 3.4e-84 315.8 300 59.3
CSS0039092 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 4.5e-84 315.5 203 76.4
CDE06G0314 Ceratophyllum demersum HOM05D006384 ORTHO05D007917 7.6e-84 314.7 217 68.2
Nitab4.5_0000754g0290 Nicotiana tabacum HOM05D006384 ORTHO05D007917 7.6e-84 314.7 264 63.3
Nitab4.5_0002130g0050 Nicotiana tabacum HOM05D006384 ORTHO05D007917 2.2e-83 313.2 315 56.8
EL10Ac7g16562 Beta vulgaris HOM05D006384 ORTHO05D007917 7.9e-81 304.7 294 57.5
CANSAT80G0575 Cannabis sativa HOM05D006384 ORTHO05D007917 1.3e-80 303.9 286 60.1
HPP92_025998 Vanilla planifolia HOM05D006384 ORTHO05D007917 3.3e-79 299.3 231 63.6
Actinidia40017 Actinidia chinensis HOM05D006384 ORTHO05D007917 4.5e-76 288.9 233 64.4
SEGI_26624 Sequoiadendron giganteum HOM05D006384 ORTHO05D007917 2.4e-69 266.5 218 59.2
Mapoly0009s0045 Marchantia polymorpha HOM05D006384 ORTHO05D007917 5.3e-69 265.4 218 57.8
PGR004G0408 Punica granatum HOM05D006384 ORTHO05D007917 7.7e-68 261.5 244 58.2
AagrBONN_evm.TU.Sc2ySwM_117.2066 Anthoceros agrestis HOM05D006384 ORTHO05D007917 3.6e-65 252.7 216 56.5
Sc20g0001670 Simmondsia chinensis HOM05D006384 ORTHO05D007917 3.3e-63 246.1 228 54.8
unitig_0.g684 Utricularia gibba HOM05D006384 ORTHO05D007917 1.8e-56 223.8 189 60.3
Cpa.g.c35130 Carica papaya HOM05D006384 ORTHO05D007917 2.3e-56 223.4 178 65.2
Manes.09G064200 Manihot esculenta HOM05D006384 ORTHO05D007917 3.7e-54 216.1 220 56.8
CBR_g30715 Chara braunii HOM05D001230 ORTHO05D007917 9.1e-53 211.5 216 50.5
FvH4_6g16140 Fragaria vesca HOM05D006384 ORTHO05D007917 1.5e-52 210.7 216 58.3
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 5.9e-52 208.8 233 49.8
SMO197G0035 Selaginella moellendorffii HOM05D006384 ORTHO05D007917 2.9e-51 206.5 192 52.6
TAR623G0498 Trochodendron aralioides HOM05D001475 ORTHO05D001525 1.9e-50 203.8 157 63.1
CSS0004677 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 2.3e-48 196.8 153 66.7
vmacro07280 Vaccinium macrocarpon HOM05D006384 ORTHO05D007917 1.1e-47 194.5 155 63.9
Ciclev10013845m.g Citrus clementina HOM05D006384 ORTHO05D007917 9.4e-42 174.9 137 64.2
CSS0019463 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 6.1e-41 172.2 166 58.4
PSO832G0438 Papaver somniferum HOM05D006384 ORTHO05D007917 1.0e-40 171.4 106 75.5
AUR62041978 Chenopodium quinoa HOM05D006384 ORTHO05D007917 2.2e-38 163.7 126 64.3
Ciclev10013192m.g Citrus clementina HOM05D006384 ORTHO05D007917 1.6e-33 147.5 99 70.7
CSS0008908 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 4.8e-30 136.0 83 79.5
CSS0018803 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 4.8e-30 136.0 83 79.5
Glyma.03G182200 Glycine max HOM05D006384 ORTHO05D007917 5.9e-20 102.4 154 48.7
Zm00001eb222550 Zea mays HOM05D006384 ORTHO05D007917 6.6e-19 99.0 127 50.4
Cfa026119 Carpinus fangiana HOM05D006384 ORTHO05D007917 8.0e-17 92.0 223 28.7
Cpa.g.sc2150.3 Carica papaya HOM05D006384 ORTHO05D007917 7.0e-13 79.0 62 71.0
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 2.1e-09 67.4 224 25.0
DCAR_017395 Daucus carota HOM05D006384 ORTHO05D007917 2.8e-09 67.0 40 75.0
Cre12.g527850 Chlamydomonas reinhardtii HOM05D006384 ORTHO05D007917 2.0e-07 60.8 225 22.2
TAR374G1213 Trochodendron aralioides HOM05D000928 ORTHO05D000023 1.3e-06 58.2 48 54.2
MCO04G452 Micromonas commoda HOM05D006384 ORTHO05D007917 1.7e-06 57.8 209 24.4
MELO3C032679.2 Cucumis melo HOM05D006384 ORTHO05D007917 2.2e-06 57.4 53 58.5
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 2.2e-06 57.4 203 23.2


User provided reference genes

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