Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p20140 Brassica napus HOM05D003485 ORTHO05D004004 4.1e-218 761.1 400 100.0
BraA03t11264Z Brassica rapa HOM05D003485 ORTHO05D004004 3.0e-216 755.0 400 99.2
C03p23590 Brassica napus HOM05D003485 ORTHO05D004004 5.6e-207 724.2 404 95.5
BolC3t14754H Brassica oleracea HOM05D003485 ORTHO05D004004 5.6e-207 724.2 404 95.5
BcaC01g05657 Brassica carinata HOM05D003485 ORTHO05D004004 8.1e-206 720.3 404 95.5
BcaB01g03837 Brassica carinata HOM05D003485 ORTHO05D004004 5.5e-178 627.9 427 81.0
Sp4g18720 Schrenkiella parvula HOM05D003485 ORTHO05D004004 2.4e-157 559.3 440 74.1
BcaB06g28940 Brassica carinata HOM05D003485 ORTHO05D004004 9.7e-151 537.3 433 73.4
BcaC02g07593 Brassica carinata HOM05D003485 ORTHO05D004004 3.5e-148 528.9 427 72.1
BolC4t28026H Brassica oleracea HOM05D003485 ORTHO05D004004 3.5e-148 528.9 427 72.1
BraA04t18284Z Brassica rapa HOM05D003485 ORTHO05D004004 8.5e-147 524.2 425 70.8
BolC4t22814H Brassica oleracea HOM05D003485 ORTHO05D004004 3.2e-146 522.3 440 68.0
BcaB02g09354 Brassica carinata HOM05D003485 ORTHO05D004004 1.5e-143 513.5 434 70.0
BcaC02g11759 Brassica carinata HOM05D003485 ORTHO05D004004 1.7e-142 510.0 447 67.6
BraA05t19893Z Brassica rapa HOM05D003485 ORTHO05D004004 2.7e-140 502.7 441 68.0
CARHR130720 Cardamine hirsuta HOM05D003485 ORTHO05D004004 1.7e-139 500.0 436 67.4
C04p11650 Brassica napus HOM05D003485 ORTHO05D004004 6.5e-139 498.0 439 67.0
AT2G36420 Arabidopsis thaliana HOM05D003485 ORTHO05D004004 2.2e-134 483.0 437 66.1
Carub.0004s1823 Capsella rubella HOM05D003485 ORTHO05D004004 6.6e-131 471.5 453 63.4
AL4G32600 Arabidopsis lyrata HOM05D003485 ORTHO05D004004 2.5e-130 469.5 442 63.1
A05p09350 Brassica napus HOM05D003485 ORTHO05D004004 4.4e-127 458.8 441 63.9
A04p27950 Brassica napus HOM05D003485 ORTHO05D004004 4.5e-71 272.7 208 74.0
Aa31LG5G21610 Aethionema arabicum HOM05D003485 ORTHO05D004004 1.2e-68 264.6 425 45.6
THA.LOC104805079 Tarenaya hassleriana HOM05D003485 ORTHO05D004004 4.3e-58 229.6 465 41.3
THA.LOC104823464 Tarenaya hassleriana HOM05D003485 ORTHO05D004004 5.9e-55 219.2 451 39.0
Sed0015592 Sechium edule HOM05D003485 ORTHO05D004004 1.7e-46 191.0 479 35.9
A04p27940 Brassica napus HOM05D003485 ORTHO05D004004 8.5e-46 188.7 139 74.8
Duzib093G1418 Durio zibethinus HOM05D003485 ORTHO05D004004 5.5e-45 186.0 538 33.5
Ciclev10011456m.g Citrus clementina HOM05D003485 ORTHO05D004004 2.1e-44 184.1 548 31.9
Sed0013820 Sechium edule HOM05D003485 ORTHO05D004004 2.1e-44 184.1 471 34.0
Haze_19558 Corylus avellana HOM05D003485 ORTHO05D004004 3.6e-44 183.3 533 33.2
AL6G13180 Arabidopsis lyrata HOM05D003485 ORTHO05D004004 1.8e-43 181.0 535 35.1
Cpa.g.sc5.65 Carica papaya HOM05D003485 ORTHO05D004004 1.8e-43 181.0 563 31.8
VMungo1383G1455 Vigna mungo HOM05D003485 ORTHO05D004004 5.2e-43 179.5 519 32.6
FvH4_6g18100 Fragaria vesca HOM05D003485 ORTHO05D004004 6.7e-43 179.1 531 31.5
THA.LOC104816367 Tarenaya hassleriana HOM05D003485 ORTHO05D004004 8.8e-43 178.7 535 34.0
MD14G1017300 Malus domestica HOM05D003485 ORTHO05D004004 1.1e-42 178.3 530 33.2
FAN14G1728 Fragaria x ananassa HOM05D003485 ORTHO05D004004 1.5e-42 177.9 531 31.3
Prupe.7G115800 Prunus persica HOM05D003485 ORTHO05D004004 2.0e-42 177.6 562 31.1
CiPaw.09G009600 Carya illinoinensis HOM05D003485 ORTHO05D004004 5.7e-42 176.0 550 31.8
Glyma.03G192000 Glycine max HOM05D003485 ORTHO05D004004 9.7e-42 175.3 524 31.3
MELO3C024521.2 Cucumis melo HOM05D003485 ORTHO05D004004 1.3e-41 174.9 512 33.4
Gorai.006G157500 Gossypium raimondii HOM05D003485 ORTHO05D004004 2.8e-41 173.7 517 33.7
CsaV3_6G040450 Cucumis sativus L. HOM05D003485 ORTHO05D004004 4.8e-41 172.9 510 33.5
ClCG04G009820 Citrullus lanatus HOM05D003485 ORTHO05D004004 1.4e-40 171.4 511 31.9
AT5G03670 Arabidopsis thaliana HOM05D003485 ORTHO05D004004 1.8e-40 171.0 534 34.1
Manes.09G058764 Manihot esculenta HOM05D003485 ORTHO05D004004 2.4e-40 170.6 553 32.9
MD12G1019500 Malus domestica HOM05D003485 ORTHO05D004004 4.1e-40 169.9 534 30.9
Cfa016557 Carpinus fangiana HOM05D003485 ORTHO05D004004 9.1e-40 168.7 537 33.9
Gohir.A09G136100 Gossypium hirsutum HOM05D003485 ORTHO05D004004 9.1e-40 168.7 525 33.5
A03p01320 Brassica napus HOM05D003485 ORTHO05D004004 1.6e-39 167.9 521 34.7
C03p01670 Brassica napus HOM05D003485 ORTHO05D004004 1.6e-39 167.9 515 35.0
Gohir.D09G137200 Gossypium hirsutum HOM05D003485 ORTHO05D004004 1.6e-39 167.9 525 33.0
BolC3t12719H Brassica oleracea HOM05D003485 ORTHO05D004004 2.0e-39 167.5 515 35.0
BraA03t09512Z Brassica rapa HOM05D003485 ORTHO05D004004 2.6e-39 167.2 521 34.7
FAN05G0153 Fragaria x ananassa HOM05D003485 ORTHO05D004004 2.6e-39 167.2 531 30.9
FAN05G0444 Fragaria x ananassa HOM05D003485 ORTHO05D004004 2.6e-39 167.2 531 30.9
BcaB01g05795 Brassica carinata HOM05D003485 ORTHO05D004004 3.5e-39 166.8 515 34.8
Glyma.19G192500 Glycine max HOM05D003485 ORTHO05D004004 4.5e-39 166.4 531 31.1
Thhalv10016054m.g Eutrema salsugineum HOM05D003485 ORTHO05D004004 5.9e-39 166.0 525 34.1
FAN09G2203 Fragaria x ananassa HOM05D003485 ORTHO05D004004 5.9e-39 166.0 529 30.8
QL07p040106 Quercus lobata HOM05D003485 ORTHO05D004004 5.9e-39 166.0 561 31.2
BolC9t60060H Brassica oleracea HOM05D003485 ORTHO05D004004 1.0e-38 165.2 516 34.3
BcaB01g05809 Brassica carinata HOM05D003485 ORTHO05D004004 1.3e-38 164.9 523 34.0
CiPaw.10G006300 Carya illinoinensis HOM05D003485 ORTHO05D004004 1.7e-38 164.5 562 30.6
Phvul.001G187300 Phaseolus vulgaris HOM05D003485 ORTHO05D004004 1.7e-38 164.5 520 30.4
RcHm_v2.0_Chr3g0472371 Rosa chinensis HOM05D003485 ORTHO05D004004 2.2e-38 164.1 544 30.3
Aa31LG1G21550 Aethionema arabicum HOM05D003485 ORTHO05D004004 3.8e-38 163.3 503 33.4
FAN02G1693 Fragaria x ananassa HOM05D003485 ORTHO05D004004 3.8e-38 163.3 532 30.6
C09p73250 Brassica napus HOM05D003485 ORTHO05D004004 8.5e-38 162.2 511 34.4
Gohir.A01G208100 Gossypium hirsutum HOM05D003485 ORTHO05D004004 1.1e-37 161.8 514 31.9
MSTRG.5814 Avicennia marina HOM05D003485 ORTHO05D004004 1.5e-37 161.4 513 31.4
Lj5g0007324 Lotus japonicus HOM05D003485 ORTHO05D004004 1.9e-37 161.0 515 30.9
Solyc09g009220.4 Solanum lycopersicum HOM05D003485 ORTHO05D004004 1.9e-37 161.0 499 31.1
Thecc.05G083100 Theobroma cacao HOM05D003485 ORTHO05D004004 3.2e-37 160.2 539 31.9
Lj1g0007531 Lotus japonicus HOM05D003485 ORTHO05D004004 4.2e-37 159.8 534 30.7
Sed0026564 Sechium edule HOM05D003485 ORTHO05D004004 7.2e-37 159.1 446 32.5
BcaC06g32076 Brassica carinata HOM05D003485 ORTHO05D004004 9.4e-37 158.7 519 33.5
Sp6g39060 Schrenkiella parvula HOM05D003485 ORTHO05D004004 9.4e-37 158.7 534 32.0
TWI74G0849 Tripterygium wilfordii HOM05D003485 ORTHO05D004004 1.2e-36 158.3 560 29.5
Medtr1g060890 Medicago truncatula HOM05D003485 ORTHO05D004004 1.6e-36 157.9 541 29.8
Phvul.007G222400 Phaseolus vulgaris HOM05D003485 ORTHO05D004004 1.6e-36 157.9 484 30.8
Duzib106G1512 Durio zibethinus HOM05D003485 ORTHO05D004004 2.7e-36 157.1 536 31.5
PGSC0003DMG400002678 Solanum tuberosum HOM05D003485 ORTHO05D004004 2.7e-36 157.1 500 30.8
PGSC0003DMG400028260 Solanum tuberosum HOM05D003485 ORTHO05D004004 2.7e-36 157.1 437 32.5
Gorai.002G241600 Gossypium raimondii HOM05D003485 ORTHO05D004004 3.6e-36 156.8 515 31.5
Gohir.D01G197500 Gossypium hirsutum HOM05D003485 ORTHO05D004004 4.7e-36 156.4 514 31.5
SalBow3G3191 Salvia bowleyana HOM05D003485 ORTHO05D004004 4.7e-36 156.4 434 34.6
Nitab4.5_0003454g0060 Nicotiana tabacum HOM05D003485 ORTHO05D004004 8.0e-36 155.6 488 31.4
ClCG10G019240 Citrullus lanatus HOM05D003485 ORTHO05D004004 1.0e-35 155.2 473 32.6
Duzib128G0159 Durio zibethinus HOM05D003485 ORTHO05D004004 1.0e-35 155.2 539 31.5
Oeu032419.1 Olea europaea HOM05D003485 ORTHO05D004004 1.4e-35 154.8 475 30.9
Nitab4.5_0000132g0120 Nicotiana tabacum HOM05D003485 ORTHO05D004004 3.0e-35 153.7 440 33.2
Sopen10g033000 Solanum pennellii HOM05D003485 ORTHO05D004004 4.0e-35 153.3 416 33.7
THA.LOC104826931 Tarenaya hassleriana HOM05D003485 ORTHO05D004004 6.7e-35 152.5 534 31.6
MSTRG.26648 Avicennia marina HOM05D003485 ORTHO05D004004 8.8e-35 152.1 487 30.6
TPR.G5671 Trifolium pratense HOM05D003485 ORTHO05D004004 1.2e-34 151.8 541 29.4
arahy.Tifrunner.gnm1.ann1.FM4PU3 Arachis hypogaea HOM05D003485 ORTHO05D004004 2.0e-34 151.0 492 31.9
Glyma.10G067100 Glycine max HOM05D003485 ORTHO05D004004 4.4e-34 149.8 514 29.6
Manes.08G022100 Manihot esculenta HOM05D003485 ORTHO05D004004 4.4e-34 149.8 545 29.9
TWI77G0029 Tripterygium wilfordii HOM05D003485 ORTHO05D004004 5.7e-34 149.4 527 30.6
Lsat_1_v5_gn_2_20881 Lactuca sativa HOM05D003485 ORTHO05D004004 9.7e-34 148.7 501 31.3
Hma1.2p1_0084F.1_g043350 Hydrangea macrophylla HOM05D003485 ORTHO05D004004 1.3e-33 148.3 511 31.1
TWI53G1381 Tripterygium wilfordii HOM05D003485 ORTHO05D004004 2.2e-33 147.5 557 29.8
CsaV3_3G036950 Cucumis sativus L. HOM05D003485 ORTHO05D004004 2.8e-33 147.1 479 30.9
PGR004G2186 Punica granatum HOM05D003485 ORTHO05D004004 3.7e-33 146.7 486 32.7
A10p32430 Brassica napus HOM05D003485 ORTHO05D004004 4.8e-33 146.4 518 31.9
BraA10t45283Z Brassica rapa HOM05D003485 ORTHO05D004004 4.8e-33 146.4 518 31.9
PGR142G1952 Punica granatum HOM05D003485 ORTHO05D004004 1.4e-32 144.8 518 30.9
Solyc10g083530.2 Solanum lycopersicum HOM05D003485 ORTHO05D004004 1.4e-32 144.8 421 33.0
arahy.Tifrunner.gnm1.ann1.UZ5M1P Arachis hypogaea HOM05D003485 ORTHO05D004004 1.8e-32 144.4 491 31.6
Atru.chr8.1615 Acer truncatum HOM05D003485 ORTHO05D004004 2.4e-32 144.1 551 31.4
Sabra06G0090200 Salix brachista HOM05D003485 ORTHO05D004004 2.4e-32 144.1 549 28.8
Oeu040530.1 Olea europaea HOM05D003485 ORTHO05D004004 5.3e-32 142.9 487 32.0
VMungo0720G2646 Vigna mungo HOM05D003485 ORTHO05D004004 5.3e-32 142.9 482 29.9
GSVIVG01033797001 Vitis vinifera HOM05D003485 ORTHO05D004004 1.6e-31 141.4 461 32.3
MSTRG.10354 Avicennia marina HOM05D003485 ORTHO05D004004 2.7e-31 140.6 472 29.4
Potri.006G115300 Populus trichocarpa HOM05D003485 ORTHO05D004004 4.5e-31 139.8 555 30.5
Peaxi162Scf00068g00085 Petunia axillaris HOM05D003485 ORTHO05D004004 5.9e-31 139.4 510 30.2
CSS0002533 Camellia sinensis var. sinensis HOM05D003485 ORTHO05D004004 1.7e-30 137.9 506 31.0
Glyma.13G152100 Glycine max HOM05D003485 ORTHO05D004004 5.0e-30 136.3 509 29.9
Lsat_1_v5_gn_1_48761 Lactuca sativa HOM05D003485 ORTHO05D004004 5.0e-30 136.3 504 28.6
TAR369G0025 Trochodendron aralioides HOM05D003485 ORTHO05D004004 6.5e-30 136.0 518 30.3
Nitab4.5_0004489g0010 Nicotiana tabacum HOM05D003485 ORTHO05D004004 8.5e-30 135.6 487 29.6
HanXRQChr01g0028981 Helianthus annuus HOM05D003485 ORTHO05D004004 1.5e-29 134.8 489 30.1
CAN.G824.15 Capsicum annuum HOM05D003485 ORTHO05D004004 4.2e-29 133.3 501 28.1
COL.COLO4_29799 Corchorus olitorius HOM05D003485 ORTHO05D004004 7.2e-29 132.5 436 31.7
Sed0007624 Sechium edule HOM05D003485 ORTHO05D004004 1.2e-28 131.7 418 33.7
Actinidia10397 Actinidia chinensis HOM05D003485 ORTHO05D004004 2.1e-28 131.0 512 29.9
DCAR_013367 Daucus carota HOM05D003485 ORTHO05D004004 4.7e-28 129.8 482 30.7
Lalb_Chr02g0155221 Lupinus albus HOM05D003485 ORTHO05D004004 8.0e-28 129.0 521 29.8
Lalb_Chr20g0112141 Lupinus albus HOM05D003485 ORTHO05D004004 8.8e-27 125.6 508 29.9
Sc02g0001100 Simmondsia chinensis HOM05D003485 ORTHO05D004004 8.8e-27 125.6 521 28.6
Cc06_g05360 Coffea canephora HOM05D003485 ORTHO05D004004 1.5e-26 124.8 417 33.1
EL10Ac7g16972 Beta vulgaris HOM05D003485 ORTHO05D004004 2.0e-26 124.4 503 29.4
TAR623G1754 Trochodendron aralioides HOM05D003485 ORTHO05D004004 5.7e-26 122.9 530 29.4
HanXRQChr11g0351281 Helianthus annuus HOM05D003485 ORTHO05D004004 1.3e-25 121.7 480 29.8
vmacro07380 Vaccinium macrocarpon HOM05D003485 ORTHO05D004004 4.8e-25 119.8 477 30.2
CARHR209630 Cardamine hirsuta HOM05D003485 ORTHO05D004004 5.4e-24 116.3 373 33.2
Ah.08g210850 Amaranthus hybridus HOM05D003485 ORTHO05D004004 1.2e-23 115.2 521 27.3
Lalb_Chr01g0018291 Lupinus albus HOM05D003485 ORTHO05D004004 2.0e-23 114.4 520 28.5
Oeu040808.2 Olea europaea HOM05D003485 ORTHO05D004004 5.9e-23 112.8 483 28.2
arahy.Tifrunner.gnm1.ann1.LG3GGS Arachis hypogaea HOM05D003485 ORTHO05D004004 7.7e-23 112.5 527 28.5
arahy.Tifrunner.gnm1.ann1.W633S9 Arachis hypogaea HOM05D003485 ORTHO05D004004 7.7e-23 112.5 527 28.5
Nn2g14048 Nelumbo nucifera HOM05D003485 ORTHO05D004004 7.7e-23 112.5 335 31.3
Dinv19839 Davidia involucrata HOM05D003485 ORTHO05D004004 1.7e-22 111.3 281 35.6
Gohir.A01G138700 Gossypium hirsutum HOM05D003485 ORTHO05D004004 2.2e-22 110.9 455 30.3
Aqoxy2G01359 Aquilegia oxysepala HOM05D003485 ORTHO05D004004 2.9e-22 110.5 569 26.7
Gohir.D01G128400 Gossypium hirsutum HOM05D003485 ORTHO05D004004 3.8e-22 110.2 460 28.9
Rhsim03G0079600 Rhododendron simsii HOM05D003485 ORTHO05D004004 6.5e-22 109.4 486 29.0
Gorai.002G159100 Gossypium raimondii HOM05D003485 ORTHO05D004004 1.9e-21 107.8 458 28.8
PSO384G0133 Papaver somniferum HOM05D003485 ORTHO05D004004 1.9e-21 107.8 564 27.1
Eucgr.A01536 Eucalyptus grandis HOM05D003485 ORTHO05D004004 4.2e-21 106.7 502 27.9
TPR.G25373 Trifolium pratense HOM05D003485 ORTHO05D004004 4.2e-21 106.7 282 34.0
DCAR_020774 Daucus carota HOM05D003485 ORTHO05D004004 1.2e-20 105.1 518 27.8
Psat6g080680 Pisum sativum HOM05D003485 ORTHO05D004004 1.6e-20 104.8 349 29.8
SGA_v2.0_scaffold184G39942 Striga asiatica HOM05D003485 ORTHO05D004004 2.1e-20 104.4 350 32.0
Eucgr.K02068 Eucalyptus grandis HOM05D003485 ORTHO05D004004 4.7e-20 103.2 475 31.6
Migut.L01764 Erythranthe guttata HOM05D003485 ORTHO05D004004 6.1e-20 102.8 405 29.4
PSO339G0389 Papaver somniferum HOM05D003485 ORTHO05D004004 6.1e-20 102.8 559 26.8
Actinidia08428 Actinidia chinensis HOM05D003485 ORTHO05D004004 2.3e-19 100.9 451 29.3
Nn6g35018 Nelumbo nucifera HOM05D003485 ORTHO05D004004 1.2e-18 98.6 144 42.4
Migut.J00977 Erythranthe guttata HOM05D003485 ORTHO05D004004 7.5e-18 95.9 269 32.0
Rhsim04G0135000 Rhododendron simsii HOM05D003485 ORTHO05D004004 3.7e-17 93.6 577 27.0
MBI01_g46563_MAGBIO Magnolia biondii HOM05D003485 ORTHO05D004004 1.1e-16 92.0 163 37.4
Psat3g035000 Pisum sativum HOM05D003485 ORTHO05D004004 1.1e-16 92.0 280 33.2
MBI17_g01908_MAGBIO Magnolia biondii HOM05D003485 ORTHO05D004004 1.6e-15 88.2 499 25.7
Carub.0006s0258 Capsella rubella HOM05D003485 ORTHO05D004004 2.0e-15 87.8 283 34.6
Aqoxy4G02862 Aquilegia oxysepala HOM05D003485 ORTHO05D004004 3.5e-15 87.0 516 25.8
Lj2A130G48 Lonicera japonica HOM05D003485 ORTHO05D004004 4.5e-15 86.7 388 30.2
Sopen09g003950 Solanum pennellii HOM05D003485 ORTHO05D004004 1.0e-14 85.5 283 30.7
ECA248G2160 Erigeron canadensis HOM05D003485 ORTHO05D004004 1.3e-14 85.1 380 27.1
Actinidia31285 Actinidia chinensis HOM05D003485 ORTHO05D004004 1.7e-14 84.7 288 29.9
MELO3C000161.2 Cucumis melo HOM05D003485 ORTHO05D004004 2.9e-14 84.0 213 34.7
ECA238G4534 Erigeron canadensis HOM05D003485 ORTHO05D004004 1.9e-13 81.3 263 34.6
Ca_08971_v3 Cicer arietinum L. HOM05D003485 ORTHO05D004004 9.5e-13 79.0 288 31.6
SalBow5G3755 Salvia bowleyana HOM05D003485 ORTHO05D004004 1.6e-12 78.2 422 28.9
unitig_578.g15766 Utricularia gibba HOM05D003485 ORTHO05D004004 6.1e-12 76.3 394 27.7
SGA_v2.0_scaffold40G15384 Striga asiatica HOM05D003485 ORTHO05D004004 2.6e-10 70.9 245 33.5
AUR62043111 Chenopodium quinoa HOM05D003485 ORTHO05D004004 4.4e-10 70.1 225 29.8
Dinv21244 Davidia involucrata HOM05D003485 ORTHO05D004004 5.7e-10 69.7 291 33.3
HanXRQChr11g0351271 Helianthus annuus HOM05D003485 ORTHO05D004004 9.8e-10 68.9 243 32.5
DCAR_007743 Daucus carota HOM05D003485 ORTHO05D004004 2.2e-09 67.8 421 24.9
MBI01_g18815_MAGBIO Magnolia biondii HOM05D003485 ORTHO05D004004 6.4e-09 66.2 263 31.2
unitig_26.g9244 Utricularia gibba HOM05D003485 ORTHO05D004004 6.4e-09 66.2 350 28.0


User provided reference genes

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