Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p20010 Brassica napus HOM05D005679 ORTHO05D007228 2.4e-176 622.1 314 100.0
BraA03t11252Z Brassica rapa HOM05D005679 ORTHO05D007228 2.4e-176 622.1 314 100.0
BcaC01g05669 Brassica carinata HOM05D005679 ORTHO05D007228 2.1e-164 582.4 314 94.3
C03p23450 Brassica napus HOM05D005679 ORTHO05D007228 6.0e-164 580.9 314 93.6
BolC3t14741H Brassica oleracea HOM05D005679 ORTHO05D007228 2.3e-163 578.9 314 93.6
BcaB01g03852 Brassica carinata HOM05D005679 ORTHO05D007228 6.9e-160 567.4 314 91.1
Sp4g18530 Schrenkiella parvula HOM05D005679 ORTHO05D007228 2.9e-150 535.4 314 86.9
AT2G36305 Arabidopsis thaliana HOM05D005679 ORTHO05D007228 2.0e-143 512.7 314 82.2
Thhalv10016950m.g Eutrema salsugineum HOM05D005679 ORTHO05D007228 7.7e-143 510.8 308 83.8
AL4G32420 Arabidopsis lyrata HOM05D005679 ORTHO05D007228 1.7e-142 509.6 314 82.5
Carub.0004s1806 Capsella rubella HOM05D005679 ORTHO05D007228 3.2e-141 505.4 314 80.6
Aa31LG5G21440 Aethionema arabicum HOM05D005679 ORTHO05D007228 3.2e-133 478.8 314 77.1
THA.LOC104807091 Tarenaya hassleriana HOM05D005679 ORTHO05D007228 5.9e-119 431.4 306 69.9
COL.COLO4_29768 Corchorus olitorius HOM05D005679 ORTHO05D007228 4.5e-111 405.2 313 63.3
Duzib093G1300 Durio zibethinus HOM05D005679 ORTHO05D007228 1.4e-107 393.7 309 63.1
Gohir.D04G100800 Gossypium hirsutum HOM05D005679 ORTHO05D007228 6.8e-107 391.3 312 62.5
Thecc.05G087100 Theobroma cacao HOM05D005679 ORTHO05D007228 8.8e-107 391.0 313 62.6
Gorai.009G404000 Gossypium raimondii HOM05D005679 ORTHO05D007228 5.7e-106 388.3 312 62.2
PGR004G0569 Punica granatum HOM05D005679 ORTHO05D007228 1.4e-104 383.6 308 63.3
Atru.chr8.1566 Acer truncatum HOM05D005679 ORTHO05D007228 9.1e-104 380.9 305 64.6
Gohir.A04G063700 Gossypium hirsutum HOM05D005679 ORTHO05D007228 9.1e-104 380.9 312 60.9
Hma1.2p1_0536F.1_g174040 Hydrangea macrophylla HOM05D005679 ORTHO05D007228 7.7e-103 377.9 309 63.1
Rhsim03G0076400 Rhododendron simsii HOM05D005679 ORTHO05D007228 1.7e-102 376.7 311 63.0
Actinidia05440 Actinidia chinensis HOM05D005679 ORTHO05D007228 2.3e-102 376.3 314 62.7
Ciclev10012247m.g Citrus clementina HOM05D005679 ORTHO05D007228 2.9e-102 375.9 316 61.4
MD14G1020800 Malus domestica HOM05D005679 ORTHO05D007228 3.8e-102 375.6 311 61.4
GSVIVG01033827001 Vitis vinifera HOM05D005679 ORTHO05D007228 6.6e-102 374.8 313 59.7
CiPaw.09G012600 Carya illinoinensis HOM05D005679 ORTHO05D007228 3.3e-101 372.5 308 62.3
Eucgr.A01508 Eucalyptus grandis HOM05D005679 ORTHO05D007228 5.6e-101 371.7 306 62.7
MD12G1023600 Malus domestica HOM05D005679 ORTHO05D007228 7.2e-101 371.3 311 60.5
CANSAT80G1368 Cannabis sativa HOM05D005679 ORTHO05D007228 1.4e-99 367.1 307 61.2
Psat6g080840 Pisum sativum HOM05D005679 ORTHO05D007228 3.0e-99 365.9 306 58.5
Glyma.13G153052 Glycine max HOM05D005679 ORTHO05D007228 8.9e-99 364.4 308 59.7
vmacro07401 Vaccinium macrocarpon HOM05D005679 ORTHO05D007228 1.5e-98 363.6 330 57.9
Potri.006G083300 Populus trichocarpa HOM05D005679 ORTHO05D007228 4.4e-98 362.1 310 61.0
RcHm_v2.0_Chr3g0472981 Rosa chinensis HOM05D005679 ORTHO05D007228 7.5e-98 361.3 311 60.1
Dinv21221 Davidia involucrata HOM05D005679 ORTHO05D007228 9.8e-98 360.9 311 60.5
TAR633G0672 Trochodendron aralioides HOM05D005679 ORTHO05D007228 9.8e-98 360.9 311 58.5
CsaV3_3G037160 Cucumis sativus L. HOM05D005679 ORTHO05D007228 1.3e-97 360.5 308 60.4
arahy.Tifrunner.gnm1.ann1.J82H2E Arachis hypogaea HOM05D005679 ORTHO05D007228 1.7e-97 360.1 309 59.5
TPR.G31118 Trifolium pratense HOM05D005679 ORTHO05D007228 2.9e-97 359.4 310 57.1
MELO3C009462.2 Cucumis melo HOM05D005679 ORTHO05D007228 3.7e-97 359.0 308 60.4
Sabra06G0062900 Salix brachista HOM05D005679 ORTHO05D007228 6.4e-97 358.2 306 60.1
ClCG10G019090 Citrullus lanatus HOM05D005679 ORTHO05D007228 1.1e-96 357.5 309 61.5
Medtr1g060300 Medicago truncatula HOM05D005679 ORTHO05D007228 1.1e-96 357.5 306 58.8
Solyc09g009630.3 Solanum lycopersicum HOM05D005679 ORTHO05D007228 1.8e-96 356.7 313 57.2
arahy.Tifrunner.gnm1.ann1.5KE53F Arachis hypogaea HOM05D005679 ORTHO05D007228 3.2e-96 355.9 306 59.8
FAN05G0675 Fragaria x ananassa HOM05D005679 ORTHO05D007228 3.2e-96 355.9 311 59.5
Sopen09g004390 Solanum pennellii HOM05D005679 ORTHO05D007228 5.4e-96 355.1 313 57.2
FAN14G3109 Fragaria x ananassa HOM05D005679 ORTHO05D007228 9.2e-96 354.4 313 60.1
Lj5g0006681 Lotus japonicus HOM05D005679 ORTHO05D007228 1.6e-95 353.6 309 60.2
VMungo0720G0655 Vigna mungo HOM05D005679 ORTHO05D007228 1.6e-95 353.6 311 57.2
FvH4_6g18450 Fragaria vesca HOM05D005679 ORTHO05D007228 2.7e-95 352.8 313 59.7
Oeu047193.1 Olea europaea HOM05D005679 ORTHO05D007228 3.5e-95 352.4 308 57.8
PGSC0003DMG401002654 Solanum tuberosum HOM05D005679 ORTHO05D007228 4.6e-95 352.1 308 58.8
Peaxi162Scf00040g01117 Petunia axillaris HOM05D005679 ORTHO05D007228 5.9e-95 351.7 309 58.3
Phvul.007G229100 Phaseolus vulgaris HOM05D005679 ORTHO05D007228 1.3e-94 350.5 306 57.8
HanXRQChr10g0313901 Helianthus annuus HOM05D005679 ORTHO05D007228 1.7e-94 350.1 315 56.2
Lalb_Chr21g0315771 Lupinus albus HOM05D005679 ORTHO05D007228 2.5e-93 346.3 304 58.9
Migut.J01051 Erythranthe guttata HOM05D005679 ORTHO05D007228 3.3e-93 345.9 308 57.8
Aqoxy4G02804 Aquilegia oxysepala HOM05D005679 ORTHO05D007228 7.3e-93 344.7 306 57.5
MSTRG.5837 Avicennia marina HOM05D005679 ORTHO05D007228 4.7e-92 342.0 313 58.5
Cc06_g05640 Coffea canephora HOM05D005679 ORTHO05D007228 8.9e-91 337.8 314 58.0
Manes.09G056451 Manihot esculenta HOM05D005679 ORTHO05D007228 8.9e-91 337.8 311 57.9
Nn6g34939 Nelumbo nucifera HOM05D005679 ORTHO05D007228 8.9e-91 337.8 331 54.4
HanXRQChr13g0424691 Helianthus annuus HOM05D005679 ORTHO05D007228 3.4e-90 335.9 296 57.4
SGA_v2.0_scaffold13G06736 Striga asiatica HOM05D005679 ORTHO05D007228 1.3e-89 334.0 295 57.3
FAN02G2684 Fragaria x ananassa HOM05D005679 ORTHO05D007228 2.9e-89 332.8 320 55.6
Lsat_1_v5_gn_1_48041 Lactuca sativa HOM05D005679 ORTHO05D007228 4.9e-89 332.0 316 53.8
PSO339G3946 Papaver somniferum HOM05D005679 ORTHO05D007228 2.4e-88 329.7 304 55.6
PSO384G2019 Papaver somniferum HOM05D005679 ORTHO05D007228 2.0e-87 326.6 304 54.9
HanXRQChr11g0340241 Helianthus annuus HOM05D005679 ORTHO05D007228 1.3e-86 323.9 310 54.8
Sc02g0000910 Simmondsia chinensis HOM05D005679 ORTHO05D007228 5.0e-86 322.0 295 54.6
Glyma.10G071200 Glycine max HOM05D005679 ORTHO05D007228 3.1e-83 312.8 313 53.4
SHI23954 Sapria himalayana HOM05D005679 ORTHO05D007228 3.4e-82 309.3 311 53.4
QL07p039311 Quercus lobata HOM05D005679 ORTHO05D007228 9.8e-82 307.8 261 62.8
FAN05G4213 Fragaria x ananassa HOM05D005679 ORTHO05D007228 5.4e-80 302.0 268 59.7
TWI77G0106 Tripterygium wilfordii HOM05D005679 ORTHO05D007228 2.1e-79 300.1 278 59.4
Nitab4.5_0001725g0030 Nicotiana tabacum HOM05D005679 ORTHO05D007228 2.7e-79 299.7 308 52.6
Haze_19592 Corylus avellana HOM05D005679 ORTHO05D007228 5.1e-78 295.4 265 60.8
CARHR130580 Cardamine hirsuta HOM05D005679 ORTHO05D007228 1.5e-77 293.9 197 79.7
TWI53G0317 Tripterygium wilfordii HOM05D005679 ORTHO05D007228 3.3e-77 292.7 261 60.9
HPP92_006355 Vanilla planifolia HOM05D005679 ORTHO05D007228 1.2e-76 290.8 316 49.4
CSS0002811 Camellia sinensis var. sinensis HOM05D005679 ORTHO05D007228 2.8e-76 289.7 232 62.5
ATR0568G150 Amborella trichopoda HOM05D005679 ORTHO05D007228 6.2e-76 288.5 263 59.3
Nitab4.5_0002400g0100 Nicotiana tabacum HOM05D005679 ORTHO05D007228 6.8e-75 285.0 327 49.2
Ah.08g210640 Amaranthus hybridus HOM05D005679 ORTHO05D007228 3.4e-74 282.7 307 49.5
EL10Ac7g16934 Beta vulgaris HOM05D005679 ORTHO05D007228 3.4e-74 282.7 308 49.7
Prupe.7G112900 Prunus persica HOM05D005679 ORTHO05D007228 1.2e-71 274.2 225 61.8
ECA248G1272 Erigeron canadensis HOM05D005679 ORTHO05D007228 1.6e-71 273.9 254 55.9
Ca_26654_v3 Cicer arietinum L. HOM05D005679 ORTHO05D007228 4.7e-68 262.3 237 57.8
HanXRQChr10g0313981 Helianthus annuus HOM05D005679 ORTHO05D007228 1.4e-67 260.8 260 51.5
unitig_749.g14296 Utricularia gibba HOM05D005679 ORTHO05D007228 2.4e-67 260.0 260 54.2
Sed0004661 Sechium edule HOM05D005679 ORTHO05D007228 2.0e-66 256.9 245 59.6
CAN.G397.28 Capsicum annuum HOM05D005679 ORTHO05D007228 3.8e-65 252.7 225 56.9
Mapoly0066s0044 Marchantia polymorpha HOM05D005679 ORTHO05D007228 6.0e-63 245.4 308 45.8
TAR636G2700 Trochodendron aralioides HOM05D005679 ORTHO05D007228 5.6e-61 238.8 283 48.4
Os05g0357700 Oryza sativa ssp. japonica HOM05D005679 ORTHO05D007228 6.9e-59 231.9 222 55.9
HanXRQChr10g0314031 Helianthus annuus HOM05D005679 ORTHO05D007228 1.5e-58 230.7 212 55.2
Zm00001eb285910 Zea mays HOM05D005679 ORTHO05D007228 1.5e-58 230.7 312 45.2
AUR62028550 Chenopodium quinoa HOM05D005679 ORTHO05D007228 2.5e-53 213.4 179 57.0
Pp3c4_17190 Physcomitrium patens HOM05D005679 ORTHO05D007228 1.1e-51 208.0 309 40.1
SMO203G0038 Selaginella moellendorffii HOM05D005679 ORTHO05D007228 4.0e-51 206.1 319 38.9
Lj9A526G37 Lonicera japonica HOM05D005679 ORTHO05D007228 7.6e-50 201.8 298 41.3
HanXRQChr10g0314011 Helianthus annuus HOM05D005679 ORTHO05D007228 1.9e-48 197.2 178 56.2
SMO327G0022 Selaginella moellendorffii HOM05D005679 ORTHO05D007228 1.6e-47 194.1 298 39.3
SEGI_36814 Sequoiadendron giganteum HOM05D005679 ORTHO05D007228 4.0e-43 179.5 225 45.3
AUR62033502 Chenopodium quinoa HOM05D005679 ORTHO05D007228 2.5e-40 170.2 192 47.9
AagrBONN_evm.TU.Sc2ySwM_228.1072 Anthoceros agrestis HOM05D005679 ORTHO05D007228 1.0e-38 164.9 166 50.0
Sed0012745 Sechium edule HOM05D005679 ORTHO05D007228 7.4e-37 158.7 213 44.1
CBR_g961 Chara braunii HOM05D005679 ORTHO05D007228 4.8e-36 156.0 245 37.6
CDE02G3258 Ceratophyllum demersum HOM05D005679 ORTHO05D007228 4.5e-34 149.4 101 70.3
Lj2A135T55 Lonicera japonica HOM05D005679 ORTHO05D007228 1.9e-32 144.1 162 48.8
HanXRQChr10g0313891 Helianthus annuus HOM05D005679 ORTHO05D007228 7.9e-31 138.7 152 50.0
SalBow3G2040 Salvia bowleyana HOM05D005679 ORTHO05D007228 3.0e-30 136.7 159 46.5
AUR62028549 Chenopodium quinoa HOM05D005679 ORTHO05D007228 1.8e-27 127.5 164 43.3
Cre01.g042150 Chlamydomonas reinhardtii HOM05D005679 ORTHO05D007228 4.5e-26 122.9 162 44.4
Dinv31674 Davidia involucrata HOM05D005679 ORTHO05D007228 1.3e-25 121.3 252 37.3
Lsat_1_v5_gn_1_48021 Lactuca sativa HOM05D005679 ORTHO05D007228 3.8e-25 119.8 87 63.2
AUR62033501 Chenopodium quinoa HOM05D005679 ORTHO05D007228 1.4e-24 117.9 177 41.2
MCO10G317 Micromonas commoda HOM05D005679 ORTHO05D007228 6.7e-22 109.0 145 41.4
Lj2A135G55 Lonicera japonica HOM05D005679 ORTHO05D007228 3.3e-21 106.7 76 63.2
Gorai.006G155900 Gossypium raimondii HOM05D005679 ORTHO05D007228 2.2e-20 104.0 81 65.4
Gohir.D09G135950 Gossypium hirsutum HOM05D005679 ORTHO05D007228 6.3e-20 102.4 81 64.2
DCAR_009157 Daucus carota HOM05D005679 ORTHO05D007228 1.5e-18 97.8 119 42.9
HanXRQChr10g0313971 Helianthus annuus HOM05D005679 ORTHO05D007228 2.2e-12 77.4 107 43.9
SEGI_00479 Sequoiadendron giganteum HOM05D005679 ORTHO05D007228 2.8e-12 77.0 70 45.7
Actinidia14313 Actinidia chinensis HOM05D005679 ORTHO05D007228 1.2e-10 71.6 197 32.5
PRCOL_00001551 Prasinoderma coloniale HOM05D005679 ORTHO05D007228 1.2e-10 71.6 144 36.1
arahy.Tifrunner.gnm1.ann1.7P1BGF Arachis hypogaea HOM05D005679 ORTHO05D003748 1.4e-06 58.2 37 73.0


User provided reference genes

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