Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p19980 Brassica napus HOM05D000108 ORTHO05D102979 4.2e-81 304.7 160 100.0
BraA05t19918Z Brassica rapa HOM05D000108 ORTHO05D001149 1.7e-45 186.4 160 72.5
BcaC02g09184 Brassica carinata HOM05D000108 ORTHO05D027658 1.2e-40 170.2 153 66.7
BraA04t18264Z Brassica rapa HOM05D000108 ORTHO05D001149 1.6e-40 169.9 160 67.5
Carub.0004s1796 Capsella rubella HOM05D000108 ORTHO05D001149 2.4e-39 166.0 160 66.9
AL4G32300 Arabidopsis lyrata HOM05D000108 ORTHO05D001149 1.5e-38 163.3 160 66.9
AT2G36200 Arabidopsis thaliana HOM05D000108 ORTHO05D001149 7.6e-38 161.0 160 65.6
C04p39790 Brassica napus HOM05D000108 ORTHO05D027658 1.1e-36 157.1 143 63.6
BcaB02g09378 Brassica carinata HOM05D000108 ORTHO05D001149 3.2e-36 155.6 160 64.4
Sp4g18420 Schrenkiella parvula HOM05D000108 ORTHO05D001149 1.2e-35 153.7 162 64.8
BcaC02g11722 Brassica carinata HOM05D000108 ORTHO05D001149 2.1e-35 152.9 160 63.8
C04p11980 Brassica napus HOM05D000108 ORTHO05D001149 2.1e-35 152.9 160 63.8
BolC4t22842H Brassica oleracea HOM05D000108 ORTHO05D001149 2.1e-35 152.9 160 63.8
CARHR130440 Cardamine hirsuta HOM05D000108 ORTHO05D001149 2.1e-35 152.9 160 61.9
A05p09640 Brassica napus HOM05D000108 ORTHO05D001149 3.5e-35 152.1 158 63.3
BcaB06g28920 Brassica carinata HOM05D000108 ORTHO05D001149 2.3e-34 149.4 162 63.6
Aa31LG5G21320 Aethionema arabicum HOM05D000108 ORTHO05D001149 3.0e-34 149.1 159 61.6
BcaC02g07624 Brassica carinata HOM05D000108 ORTHO05D001149 2.1e-32 142.9 158 58.9
BolC4t28001H Brassica oleracea HOM05D000108 ORTHO05D001149 2.8e-32 142.5 160 59.4
Thhalv10016176m.g Eutrema salsugineum HOM05D000108 ORTHO05D001149 3.6e-32 142.1 160 59.4
C04p65220 Brassica napus HOM05D000108 ORTHO05D027658 4.6e-27 125.2 92 77.2
BolC4t25553H Brassica oleracea HOM05D000108 ORTHO05D027658 6.7e-26 121.3 122 60.7
THA.LOC104823493 Tarenaya hassleriana HOM05D000108 ORTHO05D001149 1.9e-25 119.8 163 50.3
THA.LOC104799758 Tarenaya hassleriana HOM05D000108 ORTHO05D001149 3.3e-25 119.0 163 50.3
Aa31LG10G7660 Aethionema arabicum HOM05D000108 ORTHO05D001149 3.7e-24 115.5 164 50.6
Cpa.g.sc104.110 Carica papaya HOM05D000108 ORTHO05D001149 8.4e-21 104.4 163 45.4
Thecc.05G092200 Theobroma cacao HOM05D000108 ORTHO05D001149 1.4e-20 103.6 163 44.2
Gohir.A09G140300 Gossypium hirsutum HOM05D000108 ORTHO05D001149 4.2e-20 102.1 160 44.4
Dinv21185 Davidia involucrata HOM05D000108 ORTHO05D001149 1.6e-19 100.1 163 44.8
COL.COLO4_29695 Corchorus olitorius HOM05D000108 ORTHO05D001149 2.1e-19 99.8 163 42.9
Gorai.002G238800 Gossypium raimondii HOM05D000108 ORTHO05D001149 2.1e-19 99.8 163 42.3
RcHm_v2.0_Chr3g0474331 Rosa chinensis HOM05D000108 ORTHO05D001149 2.7e-19 99.4 163 43.6
Duzib106G0700 Durio zibethinus HOM05D000108 ORTHO05D001149 3.5e-19 99.0 163 43.6
Atru.chr8.1470 Acer truncatum HOM05D000108 ORTHO05D001149 4.6e-19 98.6 163 46.0
Gorai.006G153900 Gossypium raimondii HOM05D000108 ORTHO05D001149 4.6e-19 98.6 163 44.2
Gohir.D01G194700 Gossypium hirsutum HOM05D000108 ORTHO05D001149 6.0e-19 98.2 163 42.3
TWI53G1066 Tripterygium wilfordii HOM05D000108 ORTHO05D001149 6.0e-19 98.2 163 42.9
FAN14G5493 Fragaria x ananassa HOM05D000108 ORTHO05D001149 7.9e-19 97.8 181 40.9
Sabra06G0162200 Salix brachista HOM05D000108 ORTHO05D001149 7.9e-19 97.8 143 46.2
Duzib093G0492 Durio zibethinus HOM05D000108 ORTHO05D001149 1.0e-18 97.4 159 41.5
FAN09G2209 Fragaria x ananassa HOM05D000108 ORTHO05D001149 1.3e-18 97.1 181 41.4
Gohir.D09G134200 Gossypium hirsutum HOM05D000108 ORTHO05D001149 1.3e-18 97.1 163 43.6
Gohir.A01G205200 Gossypium hirsutum HOM05D000108 ORTHO05D001149 3.0e-18 95.9 163 41.7
TWI74G1552 Tripterygium wilfordii HOM05D000108 ORTHO05D001149 3.0e-18 95.9 163 41.1
Actinidia31262 Actinidia chinensis HOM05D000108 ORTHO05D001149 6.7e-18 94.7 162 43.2
FvH4_6g19220 Fragaria vesca HOM05D000108 ORTHO05D001149 6.7e-18 94.7 181 40.3
Actinidia05414 Actinidia chinensis HOM05D000108 ORTHO05D001149 8.7e-18 94.4 163 43.6
Potri.006G210700 Populus trichocarpa HOM05D000108 ORTHO05D001149 8.7e-18 94.4 163 41.7
ClCG10G018810 Citrullus lanatus HOM05D000108 ORTHO05D001149 1.1e-17 94.0 163 41.1
FAN02G2608 Fragaria x ananassa HOM05D000108 ORTHO05D001149 1.5e-17 93.6 158 43.7
Manes.09G053600 Manihot esculenta HOM05D000108 ORTHO05D001149 1.5e-17 93.6 163 41.7
Ca_09018_v3 Cicer arietinum L. HOM05D000108 ORTHO05D001149 1.9e-17 93.2 163 41.7
FAN05G3241 Fragaria x ananassa HOM05D000108 ORTHO05D001149 1.9e-17 93.2 181 39.8
CANSAT64G2391 Cannabis sativa HOM05D000108 ORTHO05D001149 2.5e-17 92.8 163 41.1
Potri.016G077800 Populus trichocarpa HOM05D000108 ORTHO05D001149 2.5e-17 92.8 163 41.7
DCAR_013405 Daucus carota HOM05D000108 ORTHO05D001149 3.3e-17 92.4 163 42.3
Rhsim03G0073800 Rhododendron simsii HOM05D000108 ORTHO05D001149 3.3e-17 92.4 162 42.0
AUR62037015 Chenopodium quinoa HOM05D000108 ORTHO05D001149 5.6e-17 91.7 159 44.0
Prupe.7G103600 Prunus persica HOM05D000108 ORTHO05D001149 7.4e-17 91.3 163 41.7
vmacro07421 Vaccinium macrocarpon HOM05D000108 ORTHO05D001149 7.4e-17 91.3 163 41.7
vmacro07426 Vaccinium macrocarpon HOM05D000108 ORTHO05D001149 7.4e-17 91.3 163 41.7
EL10Ac7g16897 Beta vulgaris HOM05D000108 ORTHO05D001149 1.6e-16 90.1 163 41.1
Nitab4.5_0003404g0060 Nicotiana tabacum HOM05D000108 ORTHO05D001149 1.6e-16 90.1 162 40.1
MSTRG.19272 Avicennia marina HOM05D000108 ORTHO05D001149 3.7e-16 89.0 163 40.5
Duzib128G1422 Durio zibethinus HOM05D000108 ORTHO05D001149 3.7e-16 89.0 159 40.9
CiPaw.09G016000 Carya illinoinensis HOM05D000108 ORTHO05D001149 8.2e-16 87.8 163 41.1
MD12G1028000 Malus domestica HOM05D000108 ORTHO05D001149 1.1e-15 87.4 163 40.5
Sed0021651 Sechium edule HOM05D000108 ORTHO05D001149 1.1e-15 87.4 163 41.7
MD14G1028400 Malus domestica HOM05D000108 ORTHO05D001149 1.8e-15 86.7 163 40.5
CiPaw.10G011400 Carya illinoinensis HOM05D000108 ORTHO05D001149 4.0e-15 85.5 163 40.5
Ciclev10010974m.g Citrus clementina HOM05D000108 ORTHO05D001149 4.0e-15 85.5 163 40.5
TPR.G14773 Trifolium pratense HOM05D000108 ORTHO05D001149 4.0e-15 85.5 163 39.9
QL07p038527 Quercus lobata HOM05D000108 ORTHO05D001149 6.9e-15 84.7 163 39.9
Sabra16G0082200 Salix brachista HOM05D000001 ORTHO05D001149 9.0e-15 84.3 145 40.7
Nn2g14198 Nelumbo nucifera HOM05D000108 ORTHO05D001149 1.2e-14 84.0 163 39.3
Ca_08900_v3 Cicer arietinum L. HOM05D000108 ORTHO05D001149 1.5e-14 83.6 163 39.9
Sopen10g032790 Solanum pennellii HOM05D000108 ORTHO05D001149 1.5e-14 83.6 160 38.1
Cc06_g06060 Coffea canephora HOM05D000108 ORTHO05D001149 2.0e-14 83.2 159 39.0
Lj3C996G12 Lonicera japonica HOM05D000108 ORTHO05D001149 2.6e-14 82.8 163 38.7
PGSC0003DMG400028253 Solanum tuberosum HOM05D000108 ORTHO05D001149 3.4e-14 82.4 160 37.5
Lalb_Chr02g0154841 Lupinus albus HOM05D000108 ORTHO05D001149 4.5e-14 82.0 163 39.3
Sabra16G0079700 Salix brachista HOM05D000108 ORTHO05D001149 4.5e-14 82.0 145 40.0
Sabra16G0082400 Salix brachista HOM05D000001 ORTHO05D001149 4.5e-14 82.0 145 40.0
Sc20g0006360 Simmondsia chinensis HOM05D000108 ORTHO05D001149 4.5e-14 82.0 164 38.4
Actinidia07919 Actinidia chinensis HOM05D000108 ORTHO05D001149 7.6e-14 81.3 165 37.6
Lj2C140T8 Lonicera japonica HOM05D000108 ORTHO05D001149 7.6e-14 81.3 163 38.0
PGR142G4316 Punica granatum HOM05D000108 ORTHO05D001149 7.6e-14 81.3 163 38.7
arahy.Tifrunner.gnm1.ann1.KFQ7S3 Arachis hypogaea HOM05D000108 ORTHO05D001149 1.0e-13 80.9 161 38.5
Ah.15g090720 Amaranthus hybridus HOM05D000108 ORTHO05D001149 1.3e-13 80.5 161 38.5
Solyc10g083310.2 Solanum lycopersicum HOM05D000108 ORTHO05D001149 1.3e-13 80.5 160 37.5
Lj5g0005745 Lotus japonicus HOM05D000108 ORTHO05D001149 1.7e-13 80.1 161 39.8
arahy.Tifrunner.gnm1.ann1.R3Y850 Arachis hypogaea HOM05D000108 ORTHO05D001149 2.2e-13 79.7 169 36.7
Dinv31703 Davidia involucrata HOM05D000108 ORTHO05D001149 2.2e-13 79.7 85 54.1
Aqoxy2G01094 Aquilegia oxysepala HOM05D000108 ORTHO05D001149 2.9e-13 79.3 163 36.8
arahy.Tifrunner.gnm1.ann1.RA398F Arachis hypogaea HOM05D000108 ORTHO05D001149 2.9e-13 79.3 169 36.7
AUR62006204 Chenopodium quinoa HOM05D000108 ORTHO05D001149 2.9e-13 79.3 85 54.1
HPP92_013814 Vanilla planifolia HOM05D000108 ORTHO05D001149 2.9e-13 79.3 160 35.6
MSTRG.5859 Avicennia marina HOM05D000108 ORTHO05D001149 3.8e-13 79.0 163 35.6
Oeu025669.1 Olea europaea HOM05D000108 ORTHO05D001149 3.8e-13 79.0 165 36.4
Sed0016130 Sechium edule HOM05D000108 ORTHO05D001149 3.8e-13 79.0 157 36.9
Phvul.001G191500 Phaseolus vulgaris HOM05D000108 ORTHO05D001149 4.9e-13 78.6 164 37.8
GSVIVG01033871001 Vitis vinifera HOM05D000108 ORTHO05D001149 6.5e-13 78.2 85 55.3
Glyma.19G195300 Glycine max HOM05D000108 ORTHO05D001149 8.4e-13 77.8 85 50.6
TPR.G23361 Trifolium pratense HOM05D000108 ORTHO05D001149 8.4e-13 77.8 85 51.8
CsaV3_3G037420 Cucumis sativus L. HOM05D000108 ORTHO05D001149 1.1e-12 77.4 164 36.0
Glyma.03G197300 Glycine max HOM05D000108 ORTHO05D001149 1.4e-12 77.0 85 50.6
VMungo1383G2688 Vigna mungo HOM05D000108 ORTHO05D001149 2.5e-12 76.3 85 50.6
Migut.L01796 Erythranthe guttata HOM05D000108 ORTHO05D001149 4.2e-12 75.5 163 34.4
Lalb_Chr01g0018081 Lupinus albus HOM05D000108 ORTHO05D001149 4.2e-12 75.5 164 36.0
Medtr1g059730 Medicago truncatula HOM05D000108 ORTHO05D001149 4.2e-12 75.5 163 38.7
Psat6g079880 Pisum sativum HOM05D000108 ORTHO05D001149 5.5e-12 75.1 163 36.8
Eucgr.K02024 Eucalyptus grandis HOM05D000108 ORTHO05D001149 7.1e-12 74.7 163 36.8
Psat3g031920 Pisum sativum HOM05D000108 ORTHO05D001149 7.1e-12 74.7 85 51.8
SalBow3G3600 Salvia bowleyana HOM05D000108 ORTHO05D001149 7.1e-12 74.7 85 51.8
MELO3C009486.2 Cucumis melo HOM05D000108 ORTHO05D001149 1.2e-11 73.9 152 35.5
CSS0016633 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D001149 1.6e-11 73.6 85 48.2
CSS0030776 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D001149 1.6e-11 73.6 85 48.2
Nitab4.5_0001933g0050 Nicotiana tabacum HOM05D000108 ORTHO05D001149 1.6e-11 73.6 85 49.4
Medtr7g105030 Medicago truncatula HOM05D000108 ORTHO05D001149 2.7e-11 72.8 85 48.2
SGA_v2.0_scaffold184G39977 Striga asiatica HOM05D000108 ORTHO05D001149 2.7e-11 72.8 163 33.7
CAN.G1069.12 Capsicum annuum HOM05D000108 ORTHO05D001149 4.6e-11 72.0 85 47.1
CSS0009350 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D001149 2.3e-10 69.7 85 49.4
Manes.08G027100 Manihot esculenta HOM05D000108 ORTHO05D001149 2.3e-10 69.7 163 37.4
TAR633G1010 Trochodendron aralioides HOM05D000108 ORTHO05D001149 2.3e-10 69.7 86 46.5
Nitab4.5_0001875g0130 Nicotiana tabacum HOM05D000108 ORTHO05D001149 3.0e-10 69.3 182 32.4
PSO339G0093 Papaver somniferum HOM05D000108 ORTHO05D001149 3.0e-10 69.3 159 34.6
PSO801G0279 Papaver somniferum HOM05D000108 ORTHO05D001149 3.0e-10 69.3 159 35.2
PGSC0003DMG400008945 Solanum tuberosum HOM05D000108 ORTHO05D001149 3.0e-10 69.3 85 44.7
CAN.G397.76 Capsicum annuum HOM05D000108 ORTHO05D001149 3.9e-10 68.9 85 43.5
HanXRQChr06g0176111 Helianthus annuus HOM05D000108 ORTHO05D001149 3.9e-10 68.9 160 33.1
SHI23862 Sapria himalayana HOM05D000105 ORTHO05D001149 3.9e-10 68.9 163 35.0
Solyc09g010060.3 Solanum lycopersicum HOM05D000108 ORTHO05D001149 3.9e-10 68.9 85 44.7
Sopen09g004800 Solanum pennellii HOM05D000108 ORTHO05D001149 3.9e-10 68.9 85 44.7
MBI17_g29798_MAGBIO Magnolia biondii HOM05D000108 ORTHO05D001149 5.1e-10 68.6 163 35.0
TAR369G1141 Trochodendron aralioides HOM05D000108 ORTHO05D001149 5.1e-10 68.6 85 47.1
PSO384G1988 Papaver somniferum HOM05D000108 ORTHO05D001149 6.7e-10 68.2 159 33.3
Nn6g34851 Nelumbo nucifera HOM05D000108 ORTHO05D001149 1.1e-09 67.4 159 34.6
Lsat_1_v5_gn_9_20980 Lactuca sativa HOM05D000108 ORTHO05D001149 1.5e-09 67.0 85 49.4
Oeu047210.1 Olea europaea HOM05D000108 ORTHO05D001149 1.5e-09 67.0 67 50.7
PSO339G3190 Papaver somniferum HOM05D000108 ORTHO05D001149 1.9e-09 66.6 159 32.7
Peaxi162Scf01023g00417 Petunia axillaris HOM05D000108 ORTHO05D001149 1.9e-09 66.6 85 43.5
TAR623G1423 Trochodendron aralioides HOM05D000108 ORTHO05D001149 1.9e-09 66.6 85 45.9
Haze_19636 Corylus avellana HOM05D000108 ORTHO05D001149 2.5e-09 66.2 165 33.3
HanXRQChr05g0133571 Helianthus annuus HOM05D000108 ORTHO05D001149 2.5e-09 66.2 85 45.9
Hund03938 Selenicereus undatus HOM05D000108 ORTHO05D001149 2.5e-09 66.2 84 46.4
ECA236G2589 Erigeron canadensis HOM05D000108 ORTHO05D001149 1.3e-08 63.9 114 37.7
Lalb_Chr06g0172451 Lupinus albus HOM05D000108 ORTHO05D001149 1.3e-08 63.9 85 45.9
Zm00001eb039420 Zea mays HOM05D000108 ORTHO05D001149 1.3e-08 63.9 160 31.2
Migut.J01016 Erythranthe guttata HOM05D000108 ORTHO05D001149 2.2e-08 63.2 85 44.7
Lsat_1_v5_gn_8_78220 Lactuca sativa HOM05D000108 ORTHO05D001149 2.2e-08 63.2 86 43.0
Zm00001eb176030 Zea mays HOM05D000108 ORTHO05D001149 2.8e-08 62.8 159 31.4
Cfa016630 Carpinus fangiana HOM05D000108 ORTHO05D001149 3.7e-08 62.4 165 32.1
SalBow5G1070 Salvia bowleyana HOM05D000108 ORTHO05D001149 6.3e-08 61.6 153 31.4
Oeu047851.1 Olea europaea HOM05D000108 ORTHO05D001149 1.8e-07 60.1 85 42.4
SGA_v2.0_scaffold35G14046 Striga asiatica HOM05D000108 ORTHO05D001149 1.8e-07 60.1 85 38.8
HanXRQChr08g0229781 Helianthus annuus HOM05D000108 ORTHO05D001149 3.1e-07 59.3 157 29.3
CDE08G1573 Ceratophyllum demersum HOM05D000108 ORTHO05D001149 5.3e-07 58.5 85 42.4
unitig_8.g4041 Utricularia gibba HOM05D000108 ORTHO05D001149 4.5e-06 55.5 146 29.5


User provided reference genes

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