Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p19520 Brassica napus HOM05D007134 ORTHO05D009004 4.5e-180 634.4 306 100.0
BraA03t11205Z Brassica rapa HOM05D007134 ORTHO05D009004 4.5e-180 634.4 306 100.0
BolC3t14673H Brassica oleracea HOM05D007134 ORTHO05D009004 1.6e-169 599.4 306 95.4
C03p22750 Brassica napus HOM05D007134 ORTHO05D009004 6.1e-169 597.4 306 94.8
Sp4g17520 Schrenkiella parvula HOM05D007134 ORTHO05D009004 7.4e-159 563.9 309 86.7
Thhalv10016981m.g Eutrema salsugineum HOM05D007134 ORTHO05D009004 9.7e-159 563.5 309 87.1
AL4G31350 Arabidopsis lyrata HOM05D007134 ORTHO05D009004 7.7e-156 553.9 309 85.8
AL457U10010 Arabidopsis lyrata HOM05D007134 ORTHO05D009004 6.5e-155 550.8 309 85.4
AT2G35320 Arabidopsis thaliana HOM05D007134 ORTHO05D009004 3.2e-154 548.5 309 85.4
CARHR129460 Cardamine hirsuta HOM05D007134 ORTHO05D009004 6.7e-152 540.8 306 83.3
Carub.0004s1701 Capsella rubella HOM05D007134 ORTHO05D009004 2.6e-151 538.9 309 83.8
BcaC01g05731 Brassica carinata HOM05D007134 ORTHO05D009004 2.7e-145 518.8 306 84.0
Aa31LG9G15330 Aethionema arabicum HOM05D007134 ORTHO05D009004 7.0e-141 504.2 301 79.1
THA.LOC104814437 Tarenaya hassleriana HOM05D007134 ORTHO05D009004 3.5e-132 475.3 308 73.4
Atru.chr6.1744 Acer truncatum HOM05D007134 ORTHO05D009004 1.1e-117 427.2 297 67.3
Potri.001G144000 Populus trichocarpa HOM05D007134 ORTHO05D009004 1.3e-115 420.2 313 62.9
COL.COLO4_17065 Corchorus olitorius HOM05D007134 ORTHO05D009004 3.0e-115 419.1 296 64.9
TAR629G3531 Trochodendron aralioides HOM05D007134 ORTHO05D009004 3.9e-115 418.7 298 64.8
Thecc.03G230400 Theobroma cacao HOM05D007134 ORTHO05D009004 1.9e-114 416.4 297 64.6
Cfa012416 Carpinus fangiana HOM05D007134 ORTHO05D009004 3.6e-113 412.1 295 66.4
CiPaw.11G091800 Carya illinoinensis HOM05D007134 ORTHO05D009004 1.8e-112 409.8 298 64.8
Haze_08260 Corylus avellana HOM05D007134 ORTHO05D009004 1.2e-111 407.1 311 63.0
PSO782G3567 Papaver somniferum HOM05D007134 ORTHO05D009004 2.0e-111 406.4 315 59.7
FvH4_5g21740 Fragaria vesca HOM05D007134 ORTHO05D009004 2.6e-111 406.0 311 63.0
Actinidia03384 Actinidia chinensis HOM05D007134 ORTHO05D009004 3.4e-111 405.6 308 61.0
CSS0021568 Camellia sinensis var. sinensis HOM05D007134 ORTHO05D009004 5.8e-111 404.8 296 62.5
RcHm_v2.0_Chr7g0209231 Rosa chinensis HOM05D007134 ORTHO05D009004 1.3e-110 403.7 294 64.3
Duzib205G1618 Durio zibethinus HOM05D007134 ORTHO05D009004 1.7e-110 403.3 297 63.6
Gohir.D12G211900 Gossypium hirsutum HOM05D007134 ORTHO05D009004 2.2e-110 402.9 297 63.3
Gorai.008G227500 Gossypium raimondii HOM05D007134 ORTHO05D009004 2.2e-110 402.9 297 63.3
Dinv28939 Davidia involucrata HOM05D007134 ORTHO05D009004 3.7e-110 402.1 289 62.6
Manes.15G172000 Manihot esculenta HOM05D007134 ORTHO05D009004 3.7e-110 402.1 302 62.3
MD06G1032400 Malus domestica HOM05D007134 ORTHO05D009004 4.9e-110 401.7 305 63.6
FAN08G2031 Fragaria x ananassa HOM05D007134 ORTHO05D009004 6.4e-110 401.4 311 62.4
Hma1.2p1_0991F.1_g244990 Hydrangea macrophylla HOM05D007134 ORTHO05D009004 8.3e-110 401.0 298 63.1
Hma1.2p1_2785F.1_g328490 Hydrangea macrophylla HOM05D007134 ORTHO05D009004 8.3e-110 401.0 297 63.3
Peaxi162Scf00006g04220 Petunia axillaris HOM05D007134 ORTHO05D009004 3.2e-109 399.1 295 63.7
Aqoxy3G02427 Aquilegia oxysepala HOM05D007134 ORTHO05D009004 7.0e-109 397.9 298 61.4
GSVIVG01013189001 Vitis vinifera HOM05D007134 ORTHO05D009004 9.2e-109 397.5 290 64.1
FAN13G3184 Fragaria x ananassa HOM05D007134 ORTHO05D009004 1.2e-108 397.1 313 61.3
Solyc08g077090.3 Solanum lycopersicum HOM05D007134 ORTHO05D009004 2.7e-108 396.0 292 63.4
ClCG10G001760 Citrullus lanatus HOM05D007134 ORTHO05D009004 3.5e-108 395.6 295 63.4
Lj8A293T18 Lonicera japonica HOM05D007134 ORTHO05D009004 3.5e-108 395.6 285 63.5
Ciclev10032247m.g Citrus clementina HOM05D007134 ORTHO05D009004 6.0e-108 394.8 300 61.0
MELO3C013860.2 Cucumis melo HOM05D007134 ORTHO05D009004 7.8e-108 394.4 295 63.1
Sabra01G0112400 Salix brachista HOM05D007134 ORTHO05D009004 1.3e-107 393.7 344 55.8
TPR.G28658 Trifolium pratense HOM05D007134 ORTHO05D009004 1.3e-107 393.7 309 58.3
Sopen08g025670 Solanum pennellii HOM05D007134 ORTHO05D009004 1.7e-107 393.3 290 63.4
FAN18G1678 Fragaria x ananassa HOM05D007134 ORTHO05D009004 2.3e-107 392.9 336 58.3
CANSAT21G0276 Cannabis sativa HOM05D007134 ORTHO05D009004 1.1e-106 390.6 291 64.3
Sed0020644 Sechium edule HOM05D007134 ORTHO05D009004 1.9e-106 389.8 294 62.2
Nitab4.5_0002931g0030 Nicotiana tabacum HOM05D007134 ORTHO05D009004 3.3e-106 389.0 292 62.7
Prupe.5G039700 Prunus persica HOM05D007134 ORTHO05D009004 3.3e-106 389.0 296 61.5
Glyma.05G112400 Glycine max HOM05D007134 ORTHO05D009004 4.3e-106 388.7 296 58.8
Lj4g0007831 Lotus japonicus HOM05D007134 ORTHO05D009004 2.8e-105 386.0 298 59.1
Psat4g079040 Pisum sativum HOM05D007134 ORTHO05D009004 3.6e-105 385.6 293 60.1
Lalb_Chr05g0220571 Lupinus albus HOM05D007134 ORTHO05D009004 4.7e-105 385.2 312 57.4
EL10Ac5g12144 Beta vulgaris HOM05D007134 ORTHO05D009004 1.4e-104 383.6 286 61.5
Ca_22068_v3 Cicer arietinum L. HOM05D007134 ORTHO05D009004 1.4e-104 383.6 312 56.4
CsaV3_3G001860 Cucumis sativus L. HOM05D007134 ORTHO05D009004 1.8e-104 383.3 285 62.5
Glyma.17G154600 Glycine max HOM05D007134 ORTHO05D009004 2.3e-104 382.9 297 59.3
CAN.G1659.3 Capsicum annuum HOM05D007134 ORTHO05D009004 4.0e-104 382.1 288 61.8
PGSC0003DMG400017530 Solanum tuberosum HOM05D007134 ORTHO05D009004 5.2e-104 381.7 321 57.9
AUR62007266 Chenopodium quinoa HOM05D007134 ORTHO05D009004 6.8e-104 381.3 285 61.4
Sc01g0007540 Simmondsia chinensis HOM05D007134 ORTHO05D009004 1.2e-103 380.6 299 58.9
Phvul.003G230000 Phaseolus vulgaris HOM05D007134 ORTHO05D009004 7.5e-103 377.9 294 59.5
TWI81G0484 Tripterygium wilfordii HOM05D007134 ORTHO05D009004 7.5e-103 377.9 297 59.6
arahy.Tifrunner.gnm1.ann1.40JZG2 Arachis hypogaea HOM05D007134 ORTHO05D009004 1.3e-102 377.1 304 58.6
PGR042G2424 Punica granatum HOM05D007134 ORTHO05D009004 4.9e-102 375.2 295 60.3
Nitab4.5_0001276g0070 Nicotiana tabacum HOM05D007134 ORTHO05D009004 6.4e-102 374.8 285 61.8
arahy.Tifrunner.gnm1.ann1.2XNM6Q Arachis hypogaea HOM05D007134 ORTHO05D009004 1.1e-101 374.0 304 58.6
Eucgr.E00292 Eucalyptus grandis HOM05D007134 ORTHO05D009004 1.6e-100 370.2 309 57.9
Ah.12g054890 Amaranthus hybridus HOM05D007134 ORTHO05D009004 2.1e-100 369.8 286 61.9
CDE12G0960 Ceratophyllum demersum HOM05D007134 ORTHO05D009004 2.3e-99 366.3 293 59.0
SGA_v2.0_scaffold34G13941 Striga asiatica HOM05D007134 ORTHO05D009004 7.3e-98 361.3 284 59.2
CDE04G0512 Ceratophyllum demersum HOM05D007134 ORTHO05D009004 8.1e-97 357.8 296 59.1
ATR0049G037 Amborella trichopoda HOM05D007134 ORTHO05D009004 2.4e-96 356.3 303 54.8
Gohir.A12G209200 Gossypium hirsutum HOM05D007134 ORTHO05D009004 5.2e-96 355.1 259 64.5
ECA233G0754 Erigeron canadensis HOM05D007134 ORTHO05D009004 3.4e-95 352.4 291 56.7
Lsat_1_v5_gn_6_64760 Lactuca sativa HOM05D007134 ORTHO05D009004 3.4e-95 352.4 289 56.1
Cc08_g02480 Coffea canephora HOM05D007134 ORTHO05D009004 9.9e-95 350.9 288 56.2
DCAR_032214 Daucus carota HOM05D007134 ORTHO05D009004 9.9e-95 350.9 284 58.5
Os06g0110100 Oryza sativa ssp. japonica HOM05D007134 ORTHO05D009004 1.3e-94 350.5 283 58.7
HanXRQChr06g0178411 Helianthus annuus HOM05D007134 ORTHO05D009004 2.9e-94 349.4 287 56.4
Zm00001eb417090 Zea mays HOM05D007134 ORTHO05D009004 4.9e-94 348.6 284 57.0
MSTRG.6669 Avicennia marina HOM05D007134 ORTHO05D009004 1.1e-93 347.4 288 56.2
Migut.M00165 Erythranthe guttata HOM05D007134 ORTHO05D009004 2.4e-93 346.3 275 57.8
SalBow7G3039 Salvia bowleyana HOM05D007134 ORTHO05D009004 1.0e-91 340.9 290 56.9
SalBow7G1996 Salvia bowleyana HOM05D007134 ORTHO05D009004 1.3e-91 340.5 288 57.3
Hund11255 Selenicereus undatus HOM05D007134 ORTHO05D009004 2.3e-91 339.7 322 51.9
Oeu036071.3 Olea europaea HOM05D007134 ORTHO05D009004 8.7e-91 337.8 322 50.9
unitig_749.g14086 Utricularia gibba HOM05D007134 ORTHO05D009004 1.5e-90 337.0 289 56.1
Rhsim11G0013400 Rhododendron simsii HOM05D007134 ORTHO05D009004 4.3e-90 335.5 431 42.5
FAN04G0135 Fragaria x ananassa HOM05D007134 ORTHO05D009004 1.4e-88 330.5 305 54.8
Nn6g33621 Nelumbo nucifera HOM05D007134 ORTHO05D009004 3.8e-86 322.4 288 54.2
PSO063G6706 Papaver somniferum HOM05D007134 ORTHO05D009004 1.2e-84 317.4 306 50.3
vmacro00339 Vaccinium macrocarpon HOM05D007134 ORTHO05D009004 1.7e-83 313.5 436 40.8
AUR62018733 Chenopodium quinoa HOM05D007134 ORTHO05D009004 9.6e-82 307.8 285 51.6
Pp3c2_15970 Physcomitrium patens HOM05D007134 ORTHO05D009004 6.0e-76 288.5 315 45.1
AagrBONN_evm.TU.Sc2ySwM_117.2263 Anthoceros agrestis HOM05D007134 ORTHO05D009004 1.5e-74 283.9 298 46.3
Medtr4g098510 Medicago truncatula HOM05D007134 ORTHO05D009004 3.0e-67 259.6 220 57.7
Pp3c1_31250 Physcomitrium patens HOM05D007134 ORTHO05D009004 2.8e-65 253.1 315 39.7
Pp3c2_10940 Physcomitrium patens HOM05D007134 ORTHO05D009004 6.9e-56 221.9 291 40.5
VMungo0251G0669 Vigna mungo HOM05D007134 ORTHO05D009004 5.9e-55 218.8 180 55.0
Pp3c17_17110 Physcomitrium patens HOM05D007134 ORTHO05D009004 4.6e-52 209.1 261 41.0
QL12p006104 Quercus lobata HOM05D007134 ORTHO05D009004 5.7e-50 202.2 150 62.0
VMungo0251G0585 Vigna mungo HOM05D007134 ORTHO05D009004 3.5e-39 166.4 113 64.6
SEGI_12545 Sequoiadendron giganteum HOM05D007134 ORTHO05D009004 9.4e-37 158.3 111 63.1
Cpa.g.sc71.65 Carica papaya HOM05D007134 ORTHO05D009004 2.2e-33 147.1 90 68.9
Nn6g33134 Nelumbo nucifera HOM05D007134 ORTHO05D009004 2.7e-07 60.5 64 48.4
Cre09.g398150 Chlamydomonas reinhardtii HOM05D007134 ORTHO05D009004 1.3e-06 58.2 88 36.4


User provided reference genes

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