Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p18310 Brassica napus HOM05D004482 ORTHO05D005212 4.5e-192 674.5 354 100.0
BraA03t11091Z Brassica rapa HOM05D004482 ORTHO05D005212 1.2e-187 659.8 354 98.0
C03p21360 Brassica napus HOM05D004482 ORTHO05D005212 1.3e-186 656.4 354 98.0
BolC3t14519H Brassica oleracea HOM05D004482 ORTHO05D005212 2.2e-186 655.6 354 97.2
A04p25280 Brassica napus HOM05D004482 ORTHO05D005212 1.2e-176 623.2 355 92.4
Sp4g15100 Schrenkiella parvula HOM05D004482 ORTHO05D005212 8.6e-175 617.1 354 92.4
BraA04t18031Z Brassica rapa HOM05D004482 ORTHO05D005212 1.0e-172 610.1 355 91.0
BolC4t27707H Brassica oleracea HOM05D004482 ORTHO05D005212 3.0e-172 608.6 355 91.0
Carub.0004s1412 Capsella rubella HOM05D004482 ORTHO05D005212 1.2e-171 606.7 353 91.2
BcaC02g07886 Brassica carinata HOM05D004482 ORTHO05D005212 3.4e-171 605.1 355 90.7
C04p62340 Brassica napus HOM05D000474 ORTHO05D005212 8.3e-170 600.5 377 85.4
AL4G28200 Arabidopsis lyrata HOM05D004482 ORTHO05D005212 9.2e-169 597.0 351 89.7
AT2G32760 Arabidopsis thaliana HOM05D004482 ORTHO05D005212 9.5e-166 587.0 351 89.2
BcaB06g28632 Brassica carinata HOM05D004482 ORTHO05D005212 2.7e-160 568.9 354 87.0
Aa31LG5G4410 Aethionema arabicum HOM05D004482 ORTHO05D005212 2.8e-157 558.9 393 77.6
Thhalv10016939m.g Eutrema salsugineum HOM05D004482 ORTHO05D005212 7.5e-147 524.2 310 89.4
THA.LOC104826120 Tarenaya hassleriana HOM05D004482 ORTHO05D005212 4.6e-144 515.0 355 76.6
CARHR126650 Cardamine hirsuta HOM05D004482 ORTHO05D005212 5.1e-143 511.5 292 91.4
BcaNung06790 Brassica carinata HOM05D004482 ORTHO05D005212 9.6e-134 480.7 263 98.1
COL.COLO4_20166 Corchorus olitorius HOM05D004482 ORTHO05D005212 3.2e-121 439.1 339 67.8
Cpa.g.sc443.1 Carica papaya HOM05D004482 ORTHO05D005212 1.1e-118 430.6 354 66.7
Ciclev10005271m.g Citrus clementina HOM05D004482 ORTHO05D005212 4.3e-118 428.7 338 66.9
Gohir.D02G025500 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.1e-116 424.1 338 66.3
Manes.15G054600 Manihot esculenta HOM05D004482 ORTHO05D005212 9.0e-116 421.0 348 63.5
Thecc.04G200900 Theobroma cacao HOM05D004482 ORTHO05D005212 4.5e-115 418.7 339 65.5
Gorai.005G031400 Gossypium raimondii HOM05D004482 ORTHO05D005212 3.8e-114 415.6 338 65.1
Gohir.A02G021300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.1e-113 414.1 338 64.8
Atru.chr4.1674 Acer truncatum HOM05D004482 ORTHO05D005212 4.2e-113 412.1 339 64.0
CsaV3_2G011600 Cucumis sativus L. HOM05D004482 ORTHO05D005212 4.2e-113 412.1 347 63.4
MELO3C020442.2 Cucumis melo HOM05D004482 ORTHO05D005212 2.7e-112 409.5 359 61.0
Duzib212G0483 Durio zibethinus HOM05D004482 ORTHO05D005212 6.0e-112 408.3 339 64.3
Gohir.D02G027800 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.0e-111 407.5 338 65.1
GSVIVG01020907001 Vitis vinifera HOM05D004482 ORTHO05D005212 1.3e-111 407.1 346 62.7
RcHm_v2.0_Chr4g0414711 Rosa chinensis HOM05D004482 ORTHO05D005212 1.8e-111 406.8 357 61.6
Duzib151G0803 Durio zibethinus HOM05D004482 ORTHO05D005212 2.3e-111 406.4 357 61.6
Prupe.1G010300 Prunus persica HOM05D004482 ORTHO05D005212 8.7e-111 404.4 357 61.6
MD00G1113200 Malus domestica HOM05D004482 ORTHO05D005212 1.1e-110 404.1 357 60.5
MD04G1010600 Malus domestica HOM05D004482 ORTHO05D005212 1.5e-110 403.7 338 62.7
FvH4_4g13790 Fragaria vesca HOM05D004482 ORTHO05D005212 7.4e-110 401.4 357 61.1
FAN12G3502 Fragaria x ananassa HOM05D004482 ORTHO05D005212 7.4e-110 401.4 358 60.9
Sed0016107 Sechium edule HOM05D004482 ORTHO05D005212 8.2e-109 397.9 350 60.9
Cfa014938 Carpinus fangiana HOM05D004482 ORTHO05D005212 1.1e-108 397.5 353 60.1
Sed0019182 Sechium edule HOM05D004482 ORTHO05D005212 1.4e-108 397.1 349 61.6
CiPaw.01G120200 Carya illinoinensis HOM05D004482 ORTHO05D005212 1.8e-108 396.7 353 60.9
ClCG06G007870 Citrullus lanatus HOM05D004482 ORTHO05D005212 1.2e-107 394.0 372 59.1
Lj3C404T0 Lonicera japonica HOM05D004482 ORTHO05D005212 2.6e-107 392.9 364 59.6
Potri.017G056800 Populus trichocarpa HOM05D004482 ORTHO05D005212 7.6e-107 391.3 356 59.0
Cc03_g07940 Coffea canephora HOM05D004482 ORTHO05D005212 4.9e-106 388.7 355 58.9
Actinidia11419 Actinidia chinensis HOM05D004482 ORTHO05D005212 8.4e-106 387.9 341 60.4
Lj3A407G37 Lonicera japonica HOM05D004482 ORTHO05D005212 4.2e-105 385.6 375 57.9
FAN17G0447 Fragaria x ananassa HOM05D004482 ORTHO05D005212 5.5e-105 385.2 381 57.0
TAR362G0107 Trochodendron aralioides HOM05D004482 ORTHO05D005212 1.0e-103 380.9 354 59.3
PGR083G2076 Punica granatum HOM05D004482 ORTHO05D005212 1.3e-103 380.6 351 60.1
Gohir.D02G027400 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.8e-103 380.2 338 61.5
CANSAT78G1841 Cannabis sativa HOM05D004482 ORTHO05D005212 3.9e-103 379.0 358 58.7
Peaxi162Scf00753g00331 Petunia axillaris HOM05D004482 ORTHO05D005212 6.7e-103 378.3 342 58.5
Lj4g0012954 Lotus japonicus HOM05D004482 ORTHO05D005212 1.5e-102 377.1 347 58.5
Hma1.2p1_0187F.1_g082340 Hydrangea macrophylla HOM05D004482 ORTHO05D005212 1.9e-102 376.7 370 56.5
TWI73G1291 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 4.8e-101 372.1 354 57.3
TPR.G11944 Trifolium pratense HOM05D004482 ORTHO05D005212 6.3e-101 371.7 335 60.3
ECA233G3015 Erigeron canadensis HOM05D004482 ORTHO05D005212 1.4e-100 370.5 338 58.3
Sopen09g034910 Solanum pennellii HOM05D004482 ORTHO05D005212 2.0e-99 366.7 354 55.9
HanXRQChr02g0059021 Helianthus annuus HOM05D004482 ORTHO05D005212 3.4e-99 365.9 346 56.9
Oeu013809.1 Olea europaea HOM05D004482 ORTHO05D005212 3.4e-99 365.9 359 56.0
Rhsim02G0059000 Rhododendron simsii HOM05D004482 ORTHO05D005212 5.9e-99 365.2 384 53.6
Migut.N00400 Erythranthe guttata HOM05D004482 ORTHO05D005212 7.6e-99 364.8 344 56.4
Glyma.08G111900 Glycine max HOM05D004482 ORTHO05D005212 7.6e-99 364.8 335 59.1
AUR62018590 Chenopodium quinoa HOM05D004482 ORTHO05D005212 1.0e-98 364.4 342 55.8
Solyc09g092030.4 Solanum lycopersicum HOM05D004482 ORTHO05D005212 2.2e-98 363.2 354 55.9
Medtr8g085350 Medicago truncatula HOM05D004482 ORTHO05D005212 2.9e-98 362.8 336 58.9
Glyma.05G154100 Glycine max HOM05D004482 ORTHO05D005212 3.8e-98 362.5 335 59.1
Psat7g074240 Pisum sativum HOM05D004482 ORTHO05D005212 3.8e-98 362.5 335 58.2
Cpa.g.sc173.9 Carica papaya HOM05D004482 ORTHO05D005212 8.5e-98 361.3 292 64.4
CAN.G1333.13 Capsicum annuum HOM05D004482 ORTHO05D005212 1.4e-97 360.5 340 56.8
Ah.11g041390 Amaranthus hybridus HOM05D004482 ORTHO05D005212 1.9e-97 360.1 339 55.2
HanXRQChr16g0497991 Helianthus annuus HOM05D004482 ORTHO05D005212 2.5e-97 359.8 347 56.2
Lalb_Chr07g0186731 Lupinus albus HOM05D004482 ORTHO05D005212 4.2e-97 359.0 335 58.2
MSTRG.24610 Avicennia marina HOM05D004482 ORTHO05D005212 9.4e-97 357.8 339 57.5
arahy.Tifrunner.gnm1.ann1.ENCW2M Arachis hypogaea HOM05D004482 ORTHO05D005212 1.2e-96 357.5 367 55.0
QL06p025411 Quercus lobata HOM05D004482 ORTHO05D005212 1.0e-95 354.4 308 61.0
FAN22G1791 Fragaria x ananassa HOM05D004482 ORTHO05D005212 5.1e-95 352.1 465 46.2
SGA_v2.0_scaffold31G12588 Striga asiatica HOM05D004482 ORTHO05D005212 8.8e-95 351.3 344 55.5
Hund18995 Selenicereus undatus HOM05D004482 ORTHO05D005212 1.9e-94 350.1 367 52.3
AUR62020829 Chenopodium quinoa HOM05D004482 ORTHO05D005212 3.3e-94 349.4 356 53.1
EL10Ac4g09020 Beta vulgaris HOM05D004482 ORTHO05D005212 5.7e-94 348.6 343 52.8
Peaxi162Scf00047g00420 Petunia axillaris HOM05D004482 ORTHO05D005212 1.3e-93 347.4 416 47.8
Gorai.006G223000 Gossypium raimondii HOM05D004482 ORTHO05D005212 2.8e-93 346.3 312 60.3
Lsat_1_v5_gn_6_61160 Lactuca sativa HOM05D004482 ORTHO05D005212 6.3e-93 345.1 348 53.7
Gohir.A09G205700 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.8e-92 343.6 300 61.3
Gohir.D09G199300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.5e-91 340.5 302 60.9
arahy.Tifrunner.gnm1.ann1.R808EC Arachis hypogaea HOM05D004482 ORTHO05D005212 1.9e-89 333.6 310 59.0
unitig_8.g4998 Utricularia gibba HOM05D004482 ORTHO05D005212 2.1e-88 330.1 341 54.3
Nn3g19571 Nelumbo nucifera HOM05D004482 ORTHO05D005212 6.1e-88 328.6 350 52.9
FAN07G1054 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.8e-87 327.0 342 54.4
Aqoxy2G00031 Aquilegia oxysepala HOM05D004482 ORTHO05D005212 3.0e-87 326.2 334 51.5
Lalb_Chr21g0313021 Lupinus albus HOM05D004482 ORTHO05D005212 3.9e-87 325.9 292 58.9
Eucgr.H02773 Eucalyptus grandis HOM05D004482 ORTHO05D005212 1.5e-86 323.9 311 58.8
vmacro15546 Vaccinium macrocarpon HOM05D004482 ORTHO05D005212 2.0e-86 323.6 462 43.9
Ca_17968_v3 Cicer arietinum L. HOM05D004482 ORTHO05D005212 2.6e-86 323.2 301 60.1
Dinv27224 Davidia involucrata HOM05D004482 ORTHO05D005212 3.3e-86 322.8 280 60.7
PSO339G2282 Papaver somniferum HOM05D004482 ORTHO05D005212 2.4e-84 316.6 341 53.1
PGSC0003DMG400026426 Solanum tuberosum HOM05D004482 ORTHO05D005212 3.4e-83 312.8 318 54.4
Nitab4.5_0000401g0030 Nicotiana tabacum HOM05D004482 ORTHO05D005212 5.9e-83 312.0 313 55.0
Nitab4.5_0006210g0070 Nicotiana tabacum HOM05D004482 ORTHO05D005212 2.9e-82 309.7 302 55.6
Sc19g0007180 Simmondsia chinensis HOM05D004482 ORTHO05D005212 2.9e-82 309.7 263 61.6
PSO384G1658 Papaver somniferum HOM05D004482 ORTHO05D005212 7.2e-81 305.1 338 52.1
Nn3g19999 Nelumbo nucifera HOM05D004482 ORTHO05D005212 1.2e-80 304.3 332 52.1
ATR1096G138 Amborella trichopoda HOM05D004482 ORTHO05D005212 2.7e-80 303.1 366 50.5
Haze_11622 Corylus avellana HOM05D004482 ORTHO05D005212 1.8e-79 300.4 566 36.9
Phvul.003G290900 Phaseolus vulgaris HOM05D004482 ORTHO05D005212 2.3e-79 300.1 301 55.1
Gohir.D02G025900 Gossypium hirsutum HOM05D004482 ORTHO05D005212 4.4e-78 295.8 226 67.7
MBI19_g24734_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 1.2e-75 287.7 430 42.3
HPP92_017061 Vanilla planifolia HOM05D004482 ORTHO05D005212 5.9e-75 285.4 347 47.3
Dinv38218 Davidia involucrata HOM05D004482 ORTHO05D005212 2.5e-73 280.0 257 59.1
Os06g0715000 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 1.0e-71 274.6 349 47.0
Lsat_1_v5_gn_2_46161 Lactuca sativa HOM05D004482 ORTHO05D005212 1.6e-67 260.8 312 48.1
CDE08G1272 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 2.7e-67 260.0 344 45.1
CDE09G1401 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 1.7e-66 257.3 344 45.9
HanXRQChr10g0277641 Helianthus annuus HOM05D004482 ORTHO05D005212 3.8e-66 256.1 310 48.1
MBI19_g24366_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 3.8e-66 256.1 305 47.2
Oeu006195.1 Olea europaea HOM05D004482 ORTHO05D005212 5.0e-66 255.8 311 48.9
BcaB01g01629 Brassica carinata HOM05D004482 ORTHO05D005212 3.2e-65 253.1 284 59.2
Duzib212G1026 Durio zibethinus HOM05D004482 ORTHO05D005212 6.6e-58 228.8 160 70.0
DCAR_001940 Daucus carota HOM05D004482 ORTHO05D005212 4.7e-56 222.6 331 41.1
SalBow3G0632 Salvia bowleyana HOM05D004482 ORTHO05D005212 7.5e-54 215.3 231 51.9
DCAR_012443 Daucus carota HOM05D004482 ORTHO05D005212 6.3e-53 212.2 158 67.1
Mapoly0173s0024 Marchantia polymorpha HOM05D004482 ORTHO05D005212 2.5e-49 200.3 378 35.7
Pp3c14_26480 Physcomitrium patens HOM05D004482 ORTHO05D005212 2.1e-48 197.2 333 35.1
Gohir.D02G026860 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.0e-47 194.9 191 58.6
Zm00001eb405320 Zea mays HOM05D004482 ORTHO05D005212 4.0e-47 193.0 206 52.4
Peaxi162Scf61983g00004 Petunia axillaris HOM05D004482 ORTHO05D005212 5.2e-47 192.6 126 73.8
SEGI_24214 Sequoiadendron giganteum HOM05D004482 ORTHO05D005212 1.2e-46 191.4 346 37.9
VMungo0251G0011 Vigna mungo HOM05D004482 ORTHO05D005212 2.2e-45 187.2 158 64.6
ECA238G0855 Erigeron canadensis HOM05D000097 ORTHO05D000041 6.6e-42 175.6 172 55.2
AagrBONN_evm.TU.Sc2ySwM_228.2912 Anthoceros agrestis HOM05D004482 ORTHO05D005212 3.3e-41 173.3 314 35.7
SMO334G0086 Selaginella moellendorffii HOM05D004482 ORTHO05D005212 4.0e-39 166.4 294 36.7
Gohir.D02G025833 Gossypium hirsutum HOM05D004482 ORTHO05D005212 4.9e-37 159.5 110 70.9
Oeu006194.1 Olea europaea HOM05D004482 ORTHO05D005212 1.2e-35 154.8 175 49.1
Sabra17G0048500 Salix brachista HOM05D004482 ORTHO05D005212 2.7e-35 153.7 115 65.2
Sabra17G0050200 Salix brachista HOM05D004482 ORTHO05D005212 2.7e-35 153.7 115 65.2
Oeu008667.1 Olea europaea HOM05D004482 ORTHO05D005212 2.1e-32 144.1 104 67.3
Os05g0490500 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 2.0e-30 137.5 221 39.4
FAN16G2719 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.6e-27 127.9 133 57.9
BcaC08g43547 Brassica carinata HOM05D004482 ORTHO05D005212 3.4e-22 110.2 70 85.7
C07p07110 Brassica napus HOM05D000057 ORTHO05D005212 9.9e-22 108.6 133 54.1
BolC4t26969H Brassica oleracea HOM05D004482 ORTHO05D005212 9.9e-22 108.6 72 83.3
BolC7t41130H Brassica oleracea HOM05D000057 ORTHO05D005212 9.9e-22 108.6 133 54.1
CBR_g30986 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-21 107.8 135 45.9
BcaC02g08439 Brassica carinata HOM05D004482 ORTHO05D005212 2.2e-21 107.5 70 84.3
C04p54180 Brassica napus HOM05D004482 ORTHO05D005212 2.9e-21 107.1 72 81.9
VMungo0251G0179 Vigna mungo HOM05D004482 ORTHO05D005212 3.2e-20 103.6 121 49.6
TWI09G0568 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 4.2e-20 103.2 132 50.8
C08p00860 Brassica napus HOM05D004482 ORTHO05D005212 9.2e-20 102.1 73 80.8
CDE09G0489 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 3.9e-18 96.7 116 45.7
DCAR_012442 Daucus carota HOM05D004482 ORTHO05D005212 3.9e-18 96.7 105 52.4
A10p31820 Brassica napus HOM05D004482 ORTHO05D005212 5.6e-17 92.8 55 92.7
BraA10t45227Z Brassica rapa HOM05D004482 ORTHO05D005212 5.6e-17 92.8 55 92.7
MCO09G655 Micromonas commoda HOM05D004482 ORTHO05D005212 8.1e-16 89.0 151 37.7
EL10Ac4g09026 Beta vulgaris HOM05D004482 ORTHO05D005212 1.3e-13 81.6 86 47.7
Cpa.g.sc173.8 Carica papaya HOM05D004482 ORTHO05D005212 2.4e-07 60.8 72 52.8
BolC6t36015H Brassica oleracea HOM05D004482 ORTHO05D005212 3.1e-07 60.5 45 71.1
Actinidia39240 Actinidia chinensis HOM05D000280 ORTHO05D000632 1.2e-06 58.5 48 64.6


User provided reference genes

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