Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p17970 Brassica napus HOM05D000186 ORTHO05D014986 9.8e-26 119.4 62 100.0
A06p31170 Brassica napus HOM05D000186 ORTHO05D014986 3.5e-23 110.9 58 100.0
A09p45590 Brassica napus HOM05D000186 ORTHO05D014986 1.7e-22 108.6 58 98.3
A03p46170 Brassica napus HOM05D000186 ORTHO05D014986 2.8e-20 101.3 66 86.4
BcaC05g29299 Brassica carinata HOM05D004782 ORTHO05D014986 9.8e-18 92.8 80 68.8
C05p55830 Brassica napus HOM05D004782 ORTHO05D005498 1.4e-16 89.0 78 67.9
BolC5t34251H Brassica oleracea HOM05D004782 ORTHO05D005498 1.4e-16 89.0 78 67.9
BcaB03g16330 Brassica carinata HOM05D000186 ORTHO05D002091 2.4e-16 88.2 47 97.9
BcaB06g27702 Brassica carinata HOM05D000186 ORTHO05D014986 2.4e-16 88.2 47 97.9
BcaC01g04574 Brassica carinata HOM05D005132 ORTHO05D005823 1.2e-15 85.9 47 95.7
BraA07t28290Z Brassica rapa HOM05D000186 ORTHO05D002091 1.2e-15 85.9 47 95.7
BraA09t40020Z Brassica rapa HOM05D000186 ORTHO05D014986 2.0e-15 85.1 44 100.0
A07p04970 Brassica napus HOM05D000186 ORTHO05D002091 2.7e-15 84.7 47 93.6
BcaC06g36088 Brassica carinata HOM05D000186 ORTHO05D002091 3.5e-15 84.3 47 93.6
C07p07980 Brassica napus HOM05D000186 ORTHO05D002091 3.5e-15 84.3 47 93.6
BolC7t41215H Brassica oleracea HOM05D000186 ORTHO05D002091 3.5e-15 84.3 47 93.6
BcaB05g25091 Brassica carinata HOM05D000186 ORTHO05D005498 1.7e-14 82.0 47 93.6
BcaC01g01740 Brassica carinata HOM05D004782 ORTHO05D005498 1.7e-14 82.0 45 95.6
BcaC06g34857 Brassica carinata HOM05D005132 ORTHO05D005823 1.7e-14 82.0 47 91.5
C03p72400 Brassica napus HOM05D000186 ORTHO05D005498 1.7e-14 82.0 45 95.6
BolC3t19536H Brassica oleracea HOM05D004782 ORTHO05D005498 1.7e-14 82.0 45 95.6
C08p04380 Brassica napus HOM05D004782 ORTHO05D005498 3.0e-14 81.3 46 91.3
BolC3t15920H Brassica oleracea HOM05D005132 ORTHO05D005823 3.0e-14 81.3 44 95.5
Carub.0003s3538 Capsella rubella HOM05D000186 ORTHO05D002091 3.9e-14 80.9 47 89.4
Aa31LG8G17680 Aethionema arabicum HOM05D000186 ORTHO05D002091 8.6e-14 79.7 47 87.2
AT2G20810 Arabidopsis thaliana HOM05D000186 ORTHO05D002091 2.5e-13 78.2 47 85.1
THA.LOC104825522 Tarenaya hassleriana HOM05D000186 ORTHO05D002091 2.5e-13 78.2 47 85.1
PGR042G0605 Punica granatum HOM05D000186 ORTHO05D002091 3.3e-13 77.8 47 85.1
BolC7t42788H Brassica oleracea HOM05D005132 ORTHO05D005823 4.3e-13 77.4 44 90.9
Cpa.g.sc9.231 Carica papaya HOM05D000186 ORTHO05D002091 4.3e-13 77.4 47 85.1
Peaxi162Scf01184g00143 Petunia axillaris HOM05D000186 ORTHO05D002091 4.3e-13 77.4 47 85.1
QL08p037441 Quercus lobata HOM05D000186 ORTHO05D002091 4.3e-13 77.4 47 85.1
SalBow7G3939 Salvia bowleyana HOM05D000186 ORTHO05D002091 4.3e-13 77.4 47 85.1
Thecc.02G172400 Theobroma cacao HOM05D000186 ORTHO05D002091 4.3e-13 77.4 47 85.1
CARHR283700 Cardamine hirsuta HOM05D000186 ORTHO05D002091 5.6e-13 77.0 47 85.1
Sc12g0002720 Simmondsia chinensis HOM05D000186 ORTHO05D002091 5.6e-13 77.0 47 85.1
CANSAT64G1153 Cannabis sativa HOM05D000186 ORTHO05D002091 7.3e-13 76.6 47 85.1
Cfa014549 Carpinus fangiana HOM05D000186 ORTHO05D002091 7.3e-13 76.6 47 83.0
Haze_13094 Corylus avellana HOM05D000186 ORTHO05D002091 7.3e-13 76.6 47 83.0
FvH4_6g44800 Fragaria vesca HOM05D000186 ORTHO05D002091 7.3e-13 76.6 47 83.0
FAN02G1873 Fragaria x ananassa HOM05D000186 ORTHO05D002091 7.3e-13 76.6 47 83.0
FAN05G5002 Fragaria x ananassa HOM05D000186 ORTHO05D002091 7.3e-13 76.6 47 83.0
FAN09G3348 Fragaria x ananassa HOM05D000186 ORTHO05D002091 7.3e-13 76.6 47 83.0
FAN14G3567 Fragaria x ananassa HOM05D000186 ORTHO05D002091 7.3e-13 76.6 47 83.0
RcHm_v2.0_Chr2g0161971 Rosa chinensis HOM05D000186 ORTHO05D002091 7.3e-13 76.6 47 83.0
Atru.BG.45.p Acer truncatum HOM05D000186 ORTHO05D002091 9.5e-13 76.3 47 83.0
arahy.Tifrunner.gnm1.ann1.T2NJE2 Arachis hypogaea HOM05D000186 ORTHO05D002091 9.5e-13 76.3 47 83.0
arahy.Tifrunner.gnm1.ann1.U5XLWX Arachis hypogaea HOM05D000186 ORTHO05D002091 9.5e-13 76.3 47 83.0
EL10Ac9g20671 Beta vulgaris HOM05D000186 ORTHO05D002091 9.5e-13 76.3 47 83.0
AUR62037381 Chenopodium quinoa HOM05D000186 ORTHO05D002091 9.5e-13 76.3 47 83.0
AUR62037612 Chenopodium quinoa HOM05D000186 ORTHO05D002091 9.5e-13 76.3 47 83.0
Ca_02647_v3 Cicer arietinum L. HOM05D000186 ORTHO05D002091 9.5e-13 76.3 47 83.0
Oeu025508.1 Olea europaea HOM05D000186 ORTHO05D002091 9.5e-13 76.3 47 83.0
Phvul.005G107500 Phaseolus vulgaris HOM05D000186 ORTHO05D002091 9.5e-13 76.3 47 83.0
VMungo1080G1753 Vigna mungo HOM05D000186 ORTHO05D002091 9.5e-13 76.3 47 83.0
AL3G53920 Arabidopsis lyrata HOM05D000186 ORTHO05D002091 1.2e-12 75.9 46 84.8
Duzib132G0554 Durio zibethinus HOM05D000186 ORTHO05D002091 1.2e-12 75.9 47 83.0
Duzib248G1245 Durio zibethinus HOM05D000186 ORTHO05D002091 1.2e-12 75.9 47 83.0
Duzib248G1664 Durio zibethinus HOM05D000186 ORTHO05D002091 1.2e-12 75.9 47 83.0
Manes.16G044600 Manihot esculenta HOM05D000186 ORTHO05D002091 1.2e-12 75.9 47 80.9
TWI18G1242 Tripterygium wilfordii HOM05D000186 ORTHO05D002091 1.2e-12 75.9 47 83.0
TWI75G0948 Tripterygium wilfordii HOM05D000186 ORTHO05D002091 1.2e-12 75.9 47 83.0
MD17G1083200 Malus domestica HOM05D000186 ORTHO05D002091 1.6e-12 75.5 47 80.9
Oeu010941.1 Olea europaea HOM05D000186 ORTHO05D002091 1.6e-12 75.5 47 83.0
Prupe.3G232100 Prunus persica HOM05D000186 ORTHO05D002091 1.6e-12 75.5 47 80.9
Sc12g0003970 Simmondsia chinensis HOM05D000186 ORTHO05D002091 1.6e-12 75.5 47 83.0
Ah.08g210580 Amaranthus hybridus HOM05D000186 ORTHO05D002091 2.1e-12 75.1 47 80.9
MSTRG.1971 Avicennia marina HOM05D000186 ORTHO05D002091 2.1e-12 75.1 47 80.9
ClCG02G017360 Citrullus lanatus HOM05D000186 ORTHO05D002091 2.1e-12 75.1 47 80.9
Ciclev10014869m.g Citrus clementina HOM05D000186 ORTHO05D002091 2.1e-12 75.1 47 83.0
MELO3C013154.2 Cucumis melo HOM05D000186 ORTHO05D002091 2.1e-12 75.1 47 80.9
CsaV3_7G021920 Cucumis sativus L. HOM05D000186 ORTHO05D002091 2.1e-12 75.1 47 80.9
Dinv15479 Davidia involucrata HOM05D000186 ORTHO05D002091 2.1e-12 75.1 47 83.0
ECA246G5124 Erigeron canadensis HOM05D000186 ORTHO05D002091 2.1e-12 75.1 47 83.0
HanXRQChr17g0542481 Helianthus annuus HOM05D000186 ORTHO05D002091 2.1e-12 75.1 47 83.0
Sed0000637 Sechium edule HOM05D000186 ORTHO05D002091 2.1e-12 75.1 47 80.9
SGA_v2.0_scaffold70G23473 Striga asiatica HOM05D000186 ORTHO05D002091 2.1e-12 75.1 47 80.9
Aqoxy1G02796 Aquilegia oxysepala HOM05D000186 ORTHO05D002091 2.8e-12 74.7 47 80.9
Glyma.12G201500 Glycine max HOM05D000186 ORTHO05D002091 2.8e-12 74.7 47 80.9
Glyma.13G300700 Glycine max HOM05D000186 ORTHO05D002091 2.8e-12 74.7 47 80.9
Lalb_Chr22g0356371 Lupinus albus HOM05D000186 ORTHO05D002091 2.8e-12 74.7 47 80.9
Lalb_Chr24g0399821 Lupinus albus HOM05D000186 ORTHO05D002091 2.8e-12 74.7 47 80.9
Medtr2g015550 Medicago truncatula HOM05D000186 ORTHO05D002091 2.8e-12 74.7 47 80.9
TPR.G12511 Trifolium pratense HOM05D000186 ORTHO05D002091 2.8e-12 74.7 47 80.9
TAR624G0384 Trochodendron aralioides HOM05D000186 ORTHO05D002091 2.8e-12 74.7 47 80.9
GSVIVG01030583001 Vitis vinifera HOM05D000186 ORTHO05D002091 2.8e-12 74.7 47 80.9
Actinidia09899 Actinidia chinensis HOM05D000186 ORTHO05D002091 3.6e-12 74.3 47 80.9
BcaB01g00710 Brassica carinata HOM05D000186 ORTHO05D005498 3.6e-12 74.3 42 95.2
Dinv23703 Davidia involucrata HOM05D000186 ORTHO05D002091 3.6e-12 74.3 47 80.9
Lj8A116G74 Lonicera japonica HOM05D000186 ORTHO05D002091 3.6e-12 74.3 47 80.9
Lj3g0009333 Lotus japonicus HOM05D000186 ORTHO05D002091 3.6e-12 74.3 47 80.9
Actinidia12453 Actinidia chinensis HOM05D000186 ORTHO05D002091 4.7e-12 73.9 47 78.7
CiPaw.03G170400 Carya illinoinensis HOM05D000186 ORTHO05D002091 4.7e-12 73.9 47 80.9
CiPaw.04G122900 Carya illinoinensis HOM05D000186 ORTHO05D002091 4.7e-12 73.9 46 82.6
Cc05_g06420 Coffea canephora HOM05D000186 ORTHO05D002091 4.7e-12 73.9 47 80.9
DCAR_009729 Daucus carota HOM05D000186 ORTHO05D002091 4.7e-12 73.9 47 80.9
Lalb_Chr14g0366651 Lupinus albus HOM05D000186 ORTHO05D002091 4.7e-12 73.9 47 78.7
Nitab4.5_0000174g0090 Nicotiana tabacum HOM05D000186 ORTHO05D002091 4.7e-12 73.9 47 80.9
Nitab4.5_0008120g0030 Nicotiana tabacum HOM05D000186 ORTHO05D002091 4.7e-12 73.9 47 80.9
Oeu058405.1 Olea europaea HOM05D000186 ORTHO05D002091 4.7e-12 73.9 47 76.6
PSO541G4487 Papaver somniferum HOM05D000186 ORTHO05D002091 4.7e-12 73.9 47 80.9
PSO675G2533 Papaver somniferum HOM05D000186 ORTHO05D002091 4.7e-12 73.9 47 80.9
Psat1g062800 Pisum sativum HOM05D000186 ORTHO05D002091 4.7e-12 73.9 47 80.9
Sed0025066 Sechium edule HOM05D000186 ORTHO05D002091 4.7e-12 73.9 46 82.6
A05p37320 Brassica napus HOM05D000186 ORTHO05D014986 6.2e-12 73.6 78 61.5
Gohir.A04G105500 Gossypium hirsutum HOM05D000186 ORTHO05D002091 6.2e-12 73.6 47 78.7
Gohir.D04G145300 Gossypium hirsutum HOM05D000186 ORTHO05D002091 6.2e-12 73.6 47 78.7
Gorai.012G131400 Gossypium raimondii HOM05D000186 ORTHO05D002091 6.2e-12 73.6 47 78.7
Psat1g027400 Pisum sativum HOM05D000186 ORTHO05D002091 6.2e-12 73.6 47 78.7
TAR627G0067 Trochodendron aralioides HOM05D000186 ORTHO05D002091 6.2e-12 73.6 47 83.0
BraA05t22529Z Brassica rapa HOM05D000186 ORTHO05D014986 8.1e-12 73.2 48 85.4
Dinv08345 Davidia involucrata HOM05D000186 ORTHO05D002091 8.1e-12 73.2 47 80.9
CSS0011873 Camellia sinensis var. sinensis HOM05D000186 ORTHO05D002091 1.1e-11 72.8 47 78.7
DCAR_019196 Daucus carota HOM05D000186 ORTHO05D002091 1.1e-11 72.8 47 78.7
Lsat_1_v5_gn_3_39241 Lactuca sativa HOM05D000186 ORTHO05D002091 1.1e-11 72.8 47 83.0
TWI36G1523 Tripterygium wilfordii HOM05D000186 ORTHO05D002091 1.1e-11 72.8 47 78.7
VMungo1127G1171 Vigna mungo HOM05D000186 ORTHO05D002091 1.1e-11 72.8 47 78.7
Ah.15g093310 Amaranthus hybridus HOM05D000186 ORTHO05D002091 1.4e-11 72.4 47 76.6
Nn4g26660 Nelumbo nucifera HOM05D000186 ORTHO05D002091 1.4e-11 72.4 47 78.7
MD09G1093100 Malus domestica HOM05D000186 ORTHO05D002091 1.8e-11 72.0 47 76.6
Lj1P853T60 Lonicera japonica HOM05D000186 ORTHO05D002091 2.3e-11 71.6 47 78.7
Rhsim06G0150500 Rhododendron simsii HOM05D000186 ORTHO05D002091 2.3e-11 71.6 46 76.1
Sopen04g026430 Solanum pennellii HOM05D000186 ORTHO05D002091 2.3e-11 71.6 47 78.7
PGSC0003DMG400024824 Solanum tuberosum HOM05D000186 ORTHO05D002091 2.3e-11 71.6 47 78.7
TAR629G1653 Trochodendron aralioides HOM05D000186 ORTHO05D002091 2.3e-11 71.6 47 78.7
vmacro12264 Vaccinium macrocarpon HOM05D000186 ORTHO05D002091 2.3e-11 71.6 46 78.3
CSS0034579 Camellia sinensis var. sinensis HOM05D000186 ORTHO05D002091 3.1e-11 71.2 47 76.6
CSS0034827 Camellia sinensis var. sinensis HOM05D000186 ORTHO05D002091 3.1e-11 71.2 47 76.6
Thhalv10001954m.g Eutrema salsugineum HOM05D000186 ORTHO05D002091 3.1e-11 71.2 47 76.6
Phvul.011G111900 Phaseolus vulgaris HOM05D000186 ORTHO05D002091 3.1e-11 71.2 47 76.6
C07p22110 Brassica napus HOM05D005132 ORTHO05D005823 4.0e-11 70.9 39 92.3
MBI13_g31537_MAGBIO Magnolia biondii HOM05D000186 ORTHO05D002091 4.0e-11 70.9 45 80.0
Hund22737 Selenicereus undatus HOM05D000186 ORTHO05D002091 5.2e-11 70.5 47 78.7
vmacro11812 Vaccinium macrocarpon HOM05D000186 ORTHO05D002091 5.2e-11 70.5 46 78.3
Solyc04g064490.3 Solanum lycopersicum HOM05D000186 ORTHO05D002091 6.8e-11 70.1 47 76.6
Potri.013G146200 Populus trichocarpa HOM05D000186 ORTHO05D002091 8.9e-11 69.7 47 70.2
CAN.G657.11 Capsicum annuum HOM05D000186 ORTHO05D002091 1.2e-10 69.3 47 76.6
Nn1g09366 Nelumbo nucifera HOM05D000186 ORTHO05D002091 1.2e-10 69.3 47 76.6
Oeu041300.1 Olea europaea HOM05D000186 ORTHO05D014986 1.2e-10 69.3 46 76.1
Peaxi162Scf00066g00168 Petunia axillaris HOM05D000186 ORTHO05D002091 1.5e-10 68.9 47 76.6
FAN09G1773 Fragaria x ananassa HOM05D000186 ORTHO05D002091 2.0e-10 68.6 42 81.0
Sabra19G0115300 Salix brachista HOM05D000186 ORTHO05D002091 2.0e-10 68.6 47 72.3
Sabra19G0138100 Salix brachista HOM05D000186 ORTHO05D002091 2.0e-10 68.6 47 72.3
CDE02G2244 Ceratophyllum demersum HOM05D000186 ORTHO05D002091 2.6e-10 68.2 47 70.2
CDE05G2730 Ceratophyllum demersum HOM05D000186 ORTHO05D002091 2.6e-10 68.2 47 70.2
Potri.019G108900 Populus trichocarpa HOM05D000186 ORTHO05D002091 3.4e-10 67.8 47 70.2
HanXRQChr17g0559371 Helianthus annuus HOM05D000186 ORTHO05D002091 4.4e-10 67.4 46 76.1
unitig_0.g739 Utricularia gibba HOM05D000527 ORTHO05D000559 4.4e-10 67.4 46 73.9
arahy.Tifrunner.gnm1.ann1.K1MIDT Arachis hypogaea HOM05D000186 ORTHO05D002091 5.8e-10 67.0 47 72.3
Sabra13G0118000 Salix brachista HOM05D000186 ORTHO05D002091 9.8e-10 66.2 55 61.8
arahy.Tifrunner.gnm1.ann1.10S551 Arachis hypogaea HOM05D000186 ORTHO05D002091 1.7e-09 65.5 47 70.2
Medtr2g006790 Medicago truncatula HOM05D000186 ORTHO05D002091 2.2e-09 65.1 47 72.3
Migut.M00301 Erythranthe guttata HOM05D000186 ORTHO05D002091 2.9e-09 64.7 46 69.6
BcaC08g44521 Brassica carinata HOM05D000186 ORTHO05D014986 4.9e-09 63.9 34 91.2
BolC7t41458H Brassica oleracea HOM05D004782 ORTHO05D005498 2.4e-08 61.6 56 64.3
C07p10120 Brassica napus HOM05D000186 ORTHO05D005498 3.2e-08 61.2 56 64.3
Os04g0636100 Oryza sativa ssp. japonica HOM05D000186 ORTHO05D002091 3.2e-08 61.2 47 66.0
SEGI_35962 Sequoiadendron giganteum HOM05D000186 ORTHO05D002091 9.2e-08 59.7 47 61.7
Zm00001eb069220 Zea mays HOM05D000186 ORTHO05D002091 1.2e-07 59.3 43 67.4
BcaC07g37075 Brassica carinata HOM05D004782 ORTHO05D005498 2.1e-07 58.5 37 86.5
BolC8t47241H Brassica oleracea HOM05D004782 ORTHO05D005498 2.1e-07 58.5 37 86.5
Lj2g0016805 Lotus japonicus HOM05D000186 ORTHO05D002091 2.1e-07 58.5 47 68.1
SEGI_27142 Sequoiadendron giganteum HOM05D000186 ORTHO05D002091 2.7e-07 58.2 47 61.7
Zm00001eb431710 Zea mays HOM05D000186 ORTHO05D002091 4.6e-07 57.4 47 61.7
SHI10477 Sapria himalayana HOM05D000186 ORTHO05D002091 7.8e-07 56.6 42 69.0
ATR0693G314 Amborella trichopoda HOM05D000186 ORTHO05D002091 1.7e-06 55.5 47 55.3
SMO117G0363 Selaginella moellendorffii HOM05D000186 ORTHO05D002091 1.7e-06 55.5 46 58.7
AagrBONN_evm.TU.Sc2ySwM_117.4091 Anthoceros agrestis HOM05D000186 ORTHO05D002091 5.1e-06 53.9 46 58.7
Mapoly0036s0088 Marchantia polymorpha HOM05D000186 ORTHO05D002091 5.1e-06 53.9 47 55.3
ATR0827G062 Amborella trichopoda HOM05D000186 ORTHO05D002091 6.6e-06 53.5 47 55.3


User provided reference genes

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