Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p17580 Brassica napus HOM05D004127 ORTHO05D005119 2.1e-61 238.8 118 100.0
BraA03t11026Z Brassica rapa HOM05D005729 ORTHO05D007026 2.3e-52 208.8 104 100.0
C04p61120 Brassica napus HOM05D004127 ORTHO05D005119 6.2e-45 184.1 107 86.0
A04p24290 Brassica napus HOM05D004127 ORTHO05D005119 1.4e-44 183.0 107 85.0
BolC4t27597H Brassica oleracea HOM05D004127 ORTHO05D005119 1.4e-44 183.0 107 85.0
BraA04t17948Z Brassica rapa HOM05D004127 ORTHO05D005119 1.4e-44 183.0 107 85.0
BcaB06g28547 Brassica carinata HOM05D004127 ORTHO05D005119 2.3e-44 182.2 107 86.0
Sp4g13890 Schrenkiella parvula HOM05D004127 ORTHO05D005119 9.8e-43 176.8 107 84.1
Thhalv10016252m.g Eutrema salsugineum HOM05D004127 ORTHO05D005119 4.1e-41 171.4 107 81.3
Thhalv10016219m.g Eutrema salsugineum HOM05D004127 ORTHO05D005119 2.7e-40 168.7 107 79.4
BraA05t20351Z Brassica rapa HOM05D004127 ORTHO05D005119 6.0e-40 167.5 107 75.7
A05p14200 Brassica napus HOM05D004127 ORTHO05D005119 1.7e-39 166.0 107 75.7
CARHR125030 Cardamine hirsuta HOM05D004127 ORTHO05D005119 5.1e-39 164.5 107 76.6
AL4G26650 Arabidopsis lyrata HOM05D004127 ORTHO05D005119 1.9e-38 162.5 110 77.3
C04p18930 Brassica napus HOM05D004127 ORTHO05D005119 4.3e-38 161.4 107 73.8
BolC4t23423H Brassica oleracea HOM05D004127 ORTHO05D005119 4.3e-38 161.4 107 73.8
BcaC02g11240 Brassica carinata HOM05D004127 ORTHO05D005119 2.1e-37 159.1 108 72.2
AT2G31400 Arabidopsis thaliana HOM05D004127 ORTHO05D005119 1.5e-35 152.9 111 73.0
BcaB02g10389 Brassica carinata HOM05D004127 ORTHO05D005119 2.6e-35 152.1 100 74.0
Carub.0004s1272 Capsella rubella HOM05D004127 ORTHO05D005119 7.6e-35 150.6 109 72.5
BcaC02g07981 Brassica carinata HOM05D004127 ORTHO05D005119 2.4e-33 145.6 93 76.3
C03p20700 Brassica napus HOM05D005729 ORTHO05D007026 8.6e-31 137.1 72 88.9
BolC3t14453H Brassica oleracea HOM05D005729 ORTHO05D007026 8.6e-31 137.1 72 88.9
Aa31LG1G8250 Aethionema arabicum HOM05D004127 ORTHO05D005119 2.2e-26 122.5 107 59.8
Thhalv10006755m.g Eutrema salsugineum HOM05D004127 ORTHO05D005119 4.9e-26 121.3 79 69.6
Manes.05G014100 Manihot esculenta HOM05D004127 ORTHO05D005119 1.9e-25 119.4 88 68.2
Gohir.A11G108300 Gossypium hirsutum HOM05D004127 ORTHO05D005119 2.4e-25 119.0 98 61.2
Gorai.007G121300 Gossypium raimondii HOM05D004127 ORTHO05D005119 2.4e-25 119.0 98 61.2
Potri.014G118500 Populus trichocarpa HOM05D004127 ORTHO05D005119 2.4e-25 119.0 81 67.9
TWI75G0020 Tripterygium wilfordii HOM05D004127 ORTHO05D005119 2.4e-25 119.0 76 71.1
BcaC01g05953 Brassica carinata HOM05D004127 ORTHO05D005119 3.2e-25 118.6 63 88.9
Gohir.D11G112800 Gossypium hirsutum HOM05D004127 ORTHO05D005119 4.2e-25 118.2 98 60.2
Gorai.008G138300 Gossypium raimondii HOM05D004127 ORTHO05D005119 5.4e-25 117.9 86 66.3
CiPaw.07G119200 Carya illinoinensis HOM05D004127 ORTHO05D005119 7.1e-25 117.5 78 66.7
Duzib138G0806 Durio zibethinus HOM05D004127 ORTHO05D005119 7.1e-25 117.5 97 60.8
Gohir.A12G123700 Gossypium hirsutum HOM05D004127 ORTHO05D005119 7.1e-25 117.5 86 65.1
Gohir.D12G127400 Gossypium hirsutum HOM05D004127 ORTHO05D005119 7.1e-25 117.5 86 66.3
Thecc.01G315900 Theobroma cacao HOM05D004127 ORTHO05D005119 7.1e-25 117.5 84 66.7
GSVIVG01028141001 Vitis vinifera HOM05D004127 ORTHO05D005119 7.1e-25 117.5 97 60.8
MBI18_g03637_MAGBIO Magnolia biondii HOM05D004127 ORTHO05D005119 9.3e-25 117.1 78 66.7
PGR083G1839 Punica granatum HOM05D004127 ORTHO05D005119 1.2e-24 116.7 78 70.5
THA.LOC104809612 Tarenaya hassleriana HOM05D004127 ORTHO05D005119 1.2e-24 116.7 104 55.8
THA.LOC104819204 Tarenaya hassleriana HOM05D004127 ORTHO05D005119 1.2e-24 116.7 107 55.1
COL.COLO4_23210 Corchorus olitorius HOM05D004127 ORTHO05D005119 1.6e-24 116.3 88 65.9
Eucgr.H00998 Eucalyptus grandis HOM05D004127 ORTHO05D005119 2.1e-24 115.9 78 69.2
Sabra14G0088000 Salix brachista HOM05D004127 ORTHO05D005119 2.7e-24 115.5 78 67.9
Manes.01G229400 Manihot esculenta HOM05D004127 ORTHO05D005119 3.5e-24 115.2 81 67.9
MSTRG.21699 Avicennia marina HOM05D004127 ORTHO05D005119 4.6e-24 114.8 103 56.3
Ciclev10018807m.g Citrus clementina HOM05D004127 ORTHO05D005119 6.0e-24 114.4 81 65.4
Sabra02G0162500 Salix brachista HOM05D004127 ORTHO05D005119 6.0e-24 114.4 78 66.7
Dinv33130 Davidia involucrata HOM05D004127 ORTHO05D005119 7.8e-24 114.0 88 63.6
Nn4g25565 Nelumbo nucifera HOM05D004127 ORTHO05D005119 7.8e-24 114.0 81 66.7
CsaV3_7G030080 Cucumis sativus L. HOM05D004127 ORTHO05D005119 1.0e-23 113.6 81 64.2
Sed0018206 Sechium edule HOM05D004127 ORTHO05D005119 1.3e-23 113.2 78 65.4
CiPaw.08G088200 Carya illinoinensis HOM05D004127 ORTHO05D005119 1.7e-23 112.8 81 63.0
Cc01_g21590 Coffea canephora HOM05D004127 ORTHO05D005119 1.7e-23 112.8 78 65.4
SalBow3G1425 Salvia bowleyana HOM05D004127 ORTHO05D005119 1.7e-23 112.8 105 55.2
Actinidia21391 Actinidia chinensis HOM05D004127 ORTHO05D005119 3.9e-23 111.7 81 63.0
ATR0693G036 Amborella trichopoda HOM05D004127 ORTHO05D005119 3.9e-23 111.7 81 63.0
Aqoxy2G02720 Aquilegia oxysepala HOM05D004127 ORTHO05D005119 3.9e-23 111.7 81 64.2
ClCG09G004980 Citrullus lanatus HOM05D004127 ORTHO05D005119 3.9e-23 111.7 81 63.0
MELO3C015913.2 Cucumis melo HOM05D004127 ORTHO05D005119 3.9e-23 111.7 81 63.0
Cfa005772 Carpinus fangiana HOM05D004127 ORTHO05D005119 5.1e-23 111.3 78 65.4
Haze_05068 Corylus avellana HOM05D004127 ORTHO05D005119 5.1e-23 111.3 78 65.4
Potri.002G193900 Populus trichocarpa HOM05D004127 ORTHO05D005119 8.7e-23 110.5 81 64.2
CSS0036979 Camellia sinensis var. sinensis HOM05D004127 ORTHO05D005119 1.1e-22 110.2 87 59.8
Nn3g21732 Nelumbo nucifera HOM05D004127 ORTHO05D005119 1.1e-22 110.2 78 62.8
PSO170G0800 Papaver somniferum HOM05D004127 ORTHO05D005119 1.1e-22 110.2 81 64.2
QL12p019388 Quercus lobata HOM05D004127 ORTHO05D005119 1.1e-22 110.2 78 64.1
CANSAT25G0729 Cannabis sativa HOM05D004127 ORTHO05D005119 1.5e-22 109.8 81 64.2
Oeu058159.1 Olea europaea HOM05D004127 ORTHO05D005119 1.5e-22 109.8 78 64.1
PSO357G0209 Papaver somniferum HOM05D004127 ORTHO05D005119 1.5e-22 109.8 78 64.1
Actinidia17915 Actinidia chinensis HOM05D004127 ORTHO05D005119 1.9e-22 109.4 81 61.7
Lj2C1208T0 Lonicera japonica HOM05D004127 ORTHO05D005119 1.9e-22 109.4 78 64.1
Atru.BG.78.p Acer truncatum HOM05D004127 ORTHO05D005119 2.5e-22 109.0 81 61.7
Actinidia25862 Actinidia chinensis HOM05D004127 ORTHO05D005119 2.5e-22 109.0 81 63.0
EL10As5g23557 Beta vulgaris HOM05D004127 ORTHO05D005119 2.5e-22 109.0 88 58.0
Migut.D00068 Erythranthe guttata HOM05D004127 ORTHO05D005119 4.3e-22 108.2 91 57.1
TAR362G1073 Trochodendron aralioides HOM05D004127 ORTHO05D005119 4.3e-22 108.2 78 60.3
arahy.Tifrunner.gnm1.ann1.1I1C4M Arachis hypogaea HOM05D004127 ORTHO05D005119 5.6e-22 107.8 86 57.0
arahy.Tifrunner.gnm1.ann1.X62M7H Arachis hypogaea HOM05D004127 ORTHO05D005119 5.6e-22 107.8 86 57.0
DCAR_012332 Daucus carota HOM05D004127 ORTHO05D005119 5.6e-22 107.8 86 59.3
Hund09649 Selenicereus undatus HOM05D004127 ORTHO05D005119 5.6e-22 107.8 78 60.3
vmacro02392 Vaccinium macrocarpon HOM05D004127 ORTHO05D005119 5.6e-22 107.8 87 58.6
Rhsim13G0003800 Rhododendron simsii HOM05D004127 ORTHO05D005119 7.3e-22 107.5 78 62.8
Solyc06g009520.3 Solanum lycopersicum HOM05D004127 ORTHO05D005119 7.3e-22 107.5 78 60.3
Sopen06g004180 Solanum pennellii HOM05D004127 ORTHO05D005119 7.3e-22 107.5 78 60.3
Ah.02g112420 Amaranthus hybridus HOM05D004127 ORTHO05D005119 9.6e-22 107.1 88 55.7
PGSC0003DMG402007298 Solanum tuberosum HOM05D004127 ORTHO05D005119 9.6e-22 107.1 78 60.3
CAN.G1280.36 Capsicum annuum HOM05D004127 ORTHO05D005119 1.3e-21 106.7 88 55.7
Rhsim01G0292100 Rhododendron simsii HOM05D004127 ORTHO05D005119 1.3e-21 106.7 81 60.5
CDE02G4605 Ceratophyllum demersum HOM05D004127 ORTHO05D005119 1.6e-21 106.3 78 61.5
MD09G1284400 Malus domestica HOM05D004127 ORTHO05D005119 2.1e-21 105.9 81 58.0
Nitab4.5_0000363g0190 Nicotiana tabacum HOM05D004127 ORTHO05D005119 2.1e-21 105.9 75 60.0
Nitab4.5_0007407g0040 Nicotiana tabacum HOM05D004127 ORTHO05D005119 2.1e-21 105.9 75 60.0
Prupe.3G010400 Prunus persica HOM05D004127 ORTHO05D005119 2.1e-21 105.9 99 51.5
CSS0010117 Camellia sinensis var. sinensis HOM05D004127 ORTHO05D005119 2.8e-21 105.5 78 59.0
CDE08G0979 Ceratophyllum demersum HOM05D004127 ORTHO05D005119 2.8e-21 105.5 78 61.5
Peaxi162Scf00058g02410 Petunia axillaris HOM05D004127 ORTHO05D005119 3.6e-21 105.1 75 60.0
MSTRG.18089 Avicennia marina HOM05D004127 ORTHO05D005119 4.8e-21 104.8 86 58.1
Lalb_Chr10g0092591 Lupinus albus HOM05D004127 ORTHO05D005119 6.2e-21 104.4 81 61.7
FvH4_1g27040 Fragaria vesca HOM05D004127 ORTHO05D005119 1.4e-20 103.2 78 60.3
FAN26G0855 Fragaria x ananassa HOM05D004127 ORTHO05D005119 1.4e-20 103.2 78 60.3
FAN28G2982 Fragaria x ananassa HOM05D004127 ORTHO05D005119 1.4e-20 103.2 78 60.3
RcHm_v2.0_Chr3g0487361 Rosa chinensis HOM05D004127 ORTHO05D005119 1.4e-20 103.2 78 60.3
TAR633G0666 Trochodendron aralioides HOM05D004127 ORTHO05D005119 1.8e-20 102.8 72 63.9
FAN23G1564 Fragaria x ananassa HOM05D004127 ORTHO05D005119 2.4e-20 102.4 79 58.2
Actinidia20980 Actinidia chinensis HOM05D004127 ORTHO05D005119 3.1e-20 102.1 81 59.3
FAN19G1378 Fragaria x ananassa HOM05D004127 ORTHO05D005119 4.0e-20 101.7 78 59.0
Lj1g0020612 Lotus japonicus HOM05D004127 ORTHO05D005119 4.0e-20 101.7 89 49.4
vmacro15103 Vaccinium macrocarpon HOM05D004127 ORTHO05D005119 6.9e-20 100.9 88 54.5
MD17G1277600 Malus domestica HOM05D004127 ORTHO05D005119 1.5e-19 99.8 81 55.6
Glyma.08G254000 Glycine max HOM05D004127 ORTHO05D005119 2.6e-19 99.0 88 53.4
VMungo1383G2579 Vigna mungo HOM05D004127 ORTHO05D005119 3.4e-19 98.6 88 52.3
ECA247G3842 Erigeron canadensis HOM05D004127 ORTHO05D005119 9.9e-19 97.1 78 57.7
Lsat_1_v5_gn_9_4701 Lactuca sativa HOM05D004127 ORTHO05D005119 1.3e-18 96.7 106 47.2
Glyma.18G276500 Glycine max HOM05D004127 ORTHO05D005119 1.7e-18 96.3 88 52.3
TPR.G3276 Trifolium pratense HOM05D004127 ORTHO05D005119 3.8e-18 95.1 85 48.2
HanXRQChr10g0285041 Helianthus annuus HOM05D004127 ORTHO05D005119 4.9e-18 94.7 78 56.4
Phvul.008G024400 Phaseolus vulgaris HOM05D004127 ORTHO05D005119 4.9e-18 94.7 88 50.0
Mapoly0036s0086 Marchantia polymorpha HOM05D004127 ORTHO05D005119 6.4e-18 94.4 103 48.5
AagrBONN_evm.TU.Sc2ySwM_117.2521 Anthoceros agrestis HOM05D004127 ORTHO05D005119 8.4e-18 94.0 78 55.1
Ca_06960_v3 Cicer arietinum L. HOM05D004127 ORTHO05D005119 1.1e-17 93.6 81 51.9
Medtr7g017525 Medicago truncatula HOM05D004127 ORTHO05D005119 1.9e-17 92.8 76 50.0
Medtr7g017530 Medicago truncatula HOM05D004127 ORTHO05D005119 1.9e-17 92.8 76 50.0
Psat0s287g0280 Pisum sativum HOM05D004127 ORTHO05D005119 2.4e-17 92.4 76 48.7
Os12g0562300 Oryza sativa ssp. japonica HOM05D004127 ORTHO05D005119 9.3e-17 90.5 78 48.7
AUR62011779 Chenopodium quinoa HOM05D004127 ORTHO05D005119 6.0e-16 87.8 88 51.1
Zm00001eb028500 Zea mays HOM05D004127 ORTHO05D005119 7.9e-16 87.4 81 48.1
HPP92_017249 Vanilla planifolia HOM05D004127 ORTHO05D005119 1.3e-15 86.7 83 44.6
HPP92_017253 Vanilla planifolia HOM05D004127 ORTHO05D005119 1.3e-15 86.7 83 44.6
Medtr7g017570 Medicago truncatula HOM05D004127 ORTHO05D005119 6.7e-15 84.3 79 45.6
AUR62024623 Chenopodium quinoa HOM05D004127 ORTHO05D005119 2.5e-14 82.4 72 58.3
Pp3c6_15900 Physcomitrium patens HOM05D004127 ORTHO05D005119 2.5e-14 82.4 85 48.2
SEGI_31801 Sequoiadendron giganteum HOM05D004127 ORTHO05D005119 3.1e-12 75.5 76 51.3
Psat4g056960 Pisum sativum HOM05D004127 ORTHO05D005119 6.9e-12 74.3 83 39.8
CBR_g9159 Chara braunii HOM05D004127 ORTHO05D005119 7.6e-11 70.9 80 42.5
Oeu048866.1 Olea europaea HOM05D004127 ORTHO05D005119 2.2e-10 69.3 56 57.1
TAR049G0006 Trochodendron aralioides HOM05D000107 ORTHO05D000062 2.4e-09 65.9 53 52.8
TAR381G1508 Trochodendron aralioides HOM05D004127 ORTHO05D005119 2.4e-09 65.9 53 52.8
SMO365G0082 Selaginella moellendorffii HOM05D004127 ORTHO05D005119 1.3e-07 60.1 72 40.3
Pp3c7_10060 Physcomitrium patens HOM05D004079 ORTHO05D005437 3.9e-07 58.5 68 36.8
Mapoly0114s0020 Marchantia polymorpha HOM05D004079 ORTHO05D005437 9.6e-06 53.9 62 33.9


User provided reference genes

Program Settings