Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p17120 Brassica napus HOM05D001069 ORTHO05D001549 3.9e-27 124.0 61 100.0
BcaB02g10334 Brassica carinata HOM05D001069 ORTHO05D001549 2.7e-20 101.3 61 83.6
A05p14900 Brassica napus HOM05D001069 ORTHO05D001549 2.7e-20 101.3 61 83.6
BraA05t20416Z Brassica rapa HOM05D001069 ORTHO05D001549 2.7e-20 101.3 61 83.6
BcaC01g06009 Brassica carinata HOM05D001069 ORTHO05D001549 3.6e-20 100.9 61 85.2
C03p20220 Brassica napus HOM05D001069 ORTHO05D001549 3.6e-20 100.9 61 85.2
BcaC02g11155 Brassica carinata HOM05D001069 ORTHO05D001549 1.3e-19 99.0 61 82.0
C04p19900 Brassica napus HOM05D001069 ORTHO05D001549 1.3e-19 99.0 61 82.0
BolC4t23529H Brassica oleracea HOM05D001069 ORTHO05D001549 1.3e-19 99.0 61 82.0
AL4G25470 Arabidopsis lyrata HOM05D001069 ORTHO05D001549 3.9e-19 97.4 61 78.7
Sp4g13130 Schrenkiella parvula HOM05D001069 ORTHO05D001549 8.7e-19 96.3 61 77.0
AT2G30580 Arabidopsis thaliana HOM05D001069 ORTHO05D001549 1.9e-18 95.1 61 77.0
A04p23330 Brassica napus HOM05D001069 ORTHO05D001549 4.3e-18 94.0 62 79.0
C04p59630 Brassica napus HOM05D001069 ORTHO05D001549 4.3e-18 94.0 62 79.0
BolC4t27471H Brassica oleracea HOM05D001069 ORTHO05D001549 4.3e-18 94.0 62 79.0
BraA04t17861Z Brassica rapa HOM05D001069 ORTHO05D001549 4.3e-18 94.0 62 79.0
BcaB01g04087 Brassica carinata HOM05D001069 ORTHO05D001549 9.7e-18 92.8 56 85.7
Thhalv10016711m.g Eutrema salsugineum HOM05D001069 ORTHO05D001549 6.3e-17 90.1 61 77.0
Carub.0004s1174 Capsella rubella HOM05D001069 ORTHO05D001549 1.1e-16 89.4 61 72.1
Aa31LG5G6190 Aethionema arabicum HOM05D001069 ORTHO05D001549 2.4e-16 88.2 61 68.9
BcaB06g28384 Brassica carinata HOM05D001069 ORTHO05D001549 3.1e-16 87.8 61 75.4
THA.LOC104800803 Tarenaya hassleriana HOM05D001069 ORTHO05D001549 1.2e-15 85.9 57 75.4
THA.LOC104826255 Tarenaya hassleriana HOM05D001069 ORTHO05D001549 2.9e-14 81.3 56 69.6
AT1G06770 Arabidopsis thaliana HOM05D001069 ORTHO05D001549 8.5e-14 79.7 59 62.7
Thhalv10007754m.g Eutrema salsugineum HOM05D001069 ORTHO05D001549 7.2e-13 76.6 61 59.0
A10p05340 Brassica napus HOM05D001069 ORTHO05D001549 9.4e-13 76.3 60 58.3
BraA10t42798Z Brassica rapa HOM05D001069 ORTHO05D001549 2.1e-12 75.1 60 56.7
AL1G16780 Arabidopsis lyrata HOM05D001069 ORTHO05D001549 2.7e-12 74.7 57 61.4
Carub.0001s0609 Capsella rubella HOM05D001069 ORTHO05D001549 2.7e-12 74.7 61 55.7
CANSAT35G1018 Cannabis sativa HOM05D001069 ORTHO05D001549 3.0e-11 71.2 57 57.9
Lalb_Chr01g0019851 Lupinus albus HOM05D001069 ORTHO05D001549 5.1e-11 70.5 61 59.0
Atru.chr5.1590 Acer truncatum HOM05D001069 ORTHO05D001549 1.1e-10 69.3 57 56.1
Hma1.2p1_1029F.1_g249660 Hydrangea macrophylla HOM05D001069 ORTHO05D001549 2.0e-10 68.6 56 58.9
Duzib211G0695 Durio zibethinus HOM05D001069 ORTHO05D001549 2.6e-10 68.2 57 54.4
Sp1g05500 Schrenkiella parvula HOM05D001069 ORTHO05D001549 2.6e-10 68.2 62 54.8
VMungo1383G3587 Vigna mungo HOM05D001069 ORTHO05D001549 3.3e-10 67.8 56 55.4
CiPaw.04G182600 Carya illinoinensis HOM05D001069 ORTHO05D001549 4.4e-10 67.4 57 56.1
Duzib138G1563 Durio zibethinus HOM05D001069 ORTHO05D001549 4.4e-10 67.4 56 55.4
CARHR006460 Cardamine hirsuta HOM05D001069 ORTHO05D001549 5.7e-10 67.0 61 52.5
Peaxi162Scf01311g00123 Petunia axillaris HOM05D001069 ORTHO05D001549 5.7e-10 67.0 60 56.7
QL12p042817 Quercus lobata HOM05D001069 ORTHO05D001549 7.4e-10 66.6 55 56.4
GSVIVG01000748001 Vitis vinifera HOM05D001069 ORTHO05D001549 7.4e-10 66.6 55 58.2
Eucgr.B01495 Eucalyptus grandis HOM05D001069 ORTHO05D001549 9.7e-10 66.2 57 54.4
DCAR_012519 Daucus carota HOM05D001069 ORTHO05D001549 1.3e-09 65.9 56 57.1
Gohir.A07G209700 Gossypium hirsutum HOM05D001069 ORTHO05D001549 1.3e-09 65.9 57 52.6
Gorai.013G104800 Gossypium raimondii HOM05D001069 ORTHO05D001549 1.3e-09 65.9 57 52.6
CSS0046589 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D001549 1.7e-09 65.5 56 53.6
COL.COLO4_05097 Corchorus olitorius HOM05D001069 ORTHO05D001549 1.7e-09 65.5 57 54.4
Phvul.001G157400 Phaseolus vulgaris HOM05D001069 ORTHO05D001549 1.7e-09 65.5 56 55.4
Gohir.D11G133300 Gossypium hirsutum HOM05D001069 ORTHO05D001549 2.2e-09 65.1 55 56.4
Gorai.007G142500 Gossypium raimondii HOM05D001069 ORTHO05D001549 2.2e-09 65.1 55 56.4
TWI75G1352 Tripterygium wilfordii HOM05D001069 ORTHO05D001549 2.2e-09 65.1 56 53.6
Duzib133G0593 Durio zibethinus HOM05D001069 ORTHO05D001549 3.7e-09 64.3 57 52.6
Gohir.D07G215800 Gossypium hirsutum HOM05D001069 ORTHO05D001549 3.7e-09 64.3 57 50.9
Peaxi162Scf01099g00031 Petunia axillaris HOM05D001069 ORTHO05D001549 3.7e-09 64.3 56 55.4
Sed0023343 Sechium edule HOM05D001069 ORTHO05D001549 3.7e-09 64.3 55 52.7
Thecc.01G266500 Theobroma cacao HOM05D001069 ORTHO05D001549 3.7e-09 64.3 57 52.6
Glyma.19G161700 Glycine max HOM05D001069 ORTHO05D001549 4.8e-09 63.9 57 49.1
TWI12G1130 Tripterygium wilfordii HOM05D001069 ORTHO05D001549 4.8e-09 63.9 56 51.8
GSVIVG01036276001 Vitis vinifera HOM05D001069 ORTHO05D001549 4.8e-09 63.9 53 62.3
ClCG07G000630 Citrullus lanatus HOM05D001069 ORTHO05D001549 6.3e-09 63.5 54 51.9
Ciclev10020170m.g Citrus clementina HOM05D001069 ORTHO05D001549 6.3e-09 63.5 55 54.5
MELO3C014308.2 Cucumis melo HOM05D001069 ORTHO05D001549 6.3e-09 63.5 54 51.9
CsaV3_2G013690 Cucumis sativus L. HOM05D001069 ORTHO05D001549 6.3e-09 63.5 54 51.9
DCAR_007344 Daucus carota HOM05D001069 ORTHO05D001549 6.3e-09 63.5 55 60.0
Glyma.03G159500 Glycine max HOM05D001069 ORTHO05D001549 6.3e-09 63.5 56 51.8
MD10G1191800 Malus domestica HOM05D001069 ORTHO05D001549 6.3e-09 63.5 54 53.7
Psat3g060040 Pisum sativum HOM05D001069 ORTHO05D001549 6.3e-09 63.5 57 54.4
TWI18G0885 Tripterygium wilfordii HOM05D001069 ORTHO05D001549 6.3e-09 63.5 56 51.8
arahy.Tifrunner.gnm1.ann1.IVX6HA Arachis hypogaea HOM05D001069 ORTHO05D001549 8.2e-09 63.2 56 50.0
arahy.Tifrunner.gnm1.ann1.XI1KBX Arachis hypogaea HOM05D001069 ORTHO05D001549 8.2e-09 63.2 56 50.0
Ca_08650_v3 Cicer arietinum L. HOM05D001069 ORTHO05D001549 8.2e-09 63.2 57 54.4
Oeu025797.2 Olea europaea HOM05D001069 ORTHO05D001549 8.2e-09 63.2 56 55.4
MSTRG.18293 Avicennia marina HOM05D001069 ORTHO05D001549 1.1e-08 62.8 57 57.9
DCAR_018455 Daucus carota HOM05D001069 ORTHO05D001549 1.1e-08 62.8 54 57.4
PSO210G3432 Papaver somniferum HOM05D001069 ORTHO05D001549 1.1e-08 62.8 55 50.9
Sed0022282 Sechium edule HOM05D001069 ORTHO05D001549 1.1e-08 62.8 55 50.9
Haze_24541 Corylus avellana HOM05D001069 ORTHO05D001549 1.4e-08 62.4 58 51.7
Nitab4.5_0001044g0100 Nicotiana tabacum HOM05D001069 ORTHO05D001549 1.4e-08 62.4 55 54.5
Nitab4.5_0002680g0050 Nicotiana tabacum HOM05D001069 ORTHO05D001549 1.4e-08 62.4 56 53.6
Potri.002G044100 Populus trichocarpa HOM05D001069 ORTHO05D001549 1.4e-08 62.4 56 55.4
Migut.D00380 Erythranthe guttata HOM05D001069 ORTHO05D001549 1.8e-08 62.0 56 53.6
Manes.01G201200 Manihot esculenta HOM05D001069 ORTHO05D001549 1.8e-08 62.0 57 49.1
Nitab4.5_0006433g0020 Nicotiana tabacum HOM05D001069 ORTHO05D001549 1.8e-08 62.0 55 52.7
PSO832G1771 Papaver somniferum HOM05D001069 ORTHO05D001549 1.8e-08 62.0 55 50.9
Prupe.8G231300 Prunus persica HOM05D001069 ORTHO05D001549 1.8e-08 62.0 55 47.3
Sabra02G0035500 Salix brachista HOM05D001069 ORTHO05D001549 1.8e-08 62.0 56 53.6
vmacro14864 Vaccinium macrocarpon HOM05D001069 ORTHO05D009886 1.8e-08 62.0 59 54.2
Lj2A1158G44 Lonicera japonica HOM05D001069 ORTHO05D001549 2.4e-08 61.6 55 52.7
MD05G1204700 Malus domestica HOM05D001069 ORTHO05D001549 2.4e-08 61.6 55 50.9
Manes.05G085200 Manihot esculenta HOM05D001069 ORTHO05D001549 2.4e-08 61.6 57 50.9
Sabra05G0168000 Salix brachista HOM05D001069 ORTHO05D001549 2.4e-08 61.6 56 57.1
CiPaw.03G258400 Carya illinoinensis HOM05D001069 ORTHO05D001549 3.1e-08 61.2 57 47.4
Migut.N02185 Erythranthe guttata HOM05D001069 ORTHO05D001549 3.1e-08 61.2 56 55.4
Hma1.2p1_0817F.1_g223140 Hydrangea macrophylla HOM05D001069 ORTHO05D001549 3.1e-08 61.2 55 52.7
Rhsim01G0269000 Rhododendron simsii HOM05D001069 ORTHO05D001549 3.1e-08 61.2 54 53.7
PGSC0003DMG400015075 Solanum tuberosum HOM05D001069 ORTHO05D001549 3.1e-08 61.2 56 53.6
MSTRG.21509 Avicennia marina HOM05D001069 ORTHO05D001549 4.1e-08 60.8 57 52.6
Lj1A60T57 Lonicera japonica HOM05D001069 ORTHO05D001549 4.1e-08 60.8 55 54.5
Solyc06g008600.3 Solanum lycopersicum HOM05D001069 ORTHO05D001549 4.1e-08 60.8 56 55.4
CAN.G2355.1 Capsicum annuum HOM05D001069 ORTHO05D001549 5.3e-08 60.5 56 51.8
Cfa002337 Carpinus fangiana HOM05D001069 ORTHO05D001549 5.3e-08 60.5 54 53.7
Medtr7g096210 Medicago truncatula HOM05D001069 ORTHO05D001549 5.3e-08 60.5 57 54.4
RcHm_v2.0_Chr6g0289351 Rosa chinensis HOM05D001069 ORTHO05D001549 5.3e-08 60.5 55 50.9
SalBow6G1387 Salvia bowleyana HOM05D001069 ORTHO05D001549 5.3e-08 60.5 57 54.4
CDE07G0350 Ceratophyllum demersum HOM05D001069 ORTHO05D001549 6.9e-08 60.1 57 49.1
Oeu058806.1 Olea europaea HOM05D001069 ORTHO05D001549 6.9e-08 60.1 55 47.3
Solyc06g084040.3 Solanum lycopersicum HOM05D001069 ORTHO05D001549 6.9e-08 60.1 55 50.9
Sopen06g035430 Solanum pennellii HOM05D001069 ORTHO05D001549 6.9e-08 60.1 55 50.9
Gohir.A08G061500 Gossypium hirsutum HOM05D001069 ORTHO05D001549 9.1e-08 59.7 57 49.1
Gohir.D08G070600 Gossypium hirsutum HOM05D001069 ORTHO05D001549 9.1e-08 59.7 57 49.1
Gorai.004G074300 Gossypium raimondii HOM05D001069 ORTHO05D001549 9.1e-08 59.7 57 49.1
TPR.G5719 Trifolium pratense HOM05D001069 ORTHO05D001549 9.1e-08 59.7 57 50.9
Cc01_g18760 Coffea canephora HOM05D001069 ORTHO05D001549 1.2e-07 59.3 56 51.8
Lj1g0027423 Lotus japonicus HOM05D001069 ORTHO05D001549 1.2e-07 59.3 56 55.4
Oeu018169.2 Olea europaea HOM05D001069 ORTHO05D001549 1.2e-07 59.3 56 55.4
Sopen06g003370 Solanum pennellii HOM05D001069 ORTHO05D001549 1.2e-07 59.3 56 53.6
TAR365G0140 Trochodendron aralioides HOM05D001069 ORTHO05D001549 1.2e-07 59.3 55 52.7
Oeu010129.1 Olea europaea HOM05D001069 ORTHO05D001549 1.5e-07 58.9 56 48.2
Solyc09g065990.3 Solanum lycopersicum HOM05D001069 ORTHO05D001549 1.5e-07 58.9 56 51.8
FAN15G3286 Fragaria x ananassa HOM05D001069 ORTHO05D001549 2.0e-07 58.5 55 49.1
FAN20G1158 Fragaria x ananassa HOM05D001069 ORTHO05D001549 2.0e-07 58.5 55 49.1
FAN24G0273 Fragaria x ananassa HOM05D001069 ORTHO05D001549 2.0e-07 58.5 55 49.1
Nitab4.5_0002636g0010 Nicotiana tabacum HOM05D001069 ORTHO05D001549 2.0e-07 58.5 59 50.8
PGSC0003DMG400020061 Solanum tuberosum HOM05D001069 ORTHO05D001549 2.0e-07 58.5 55 49.1
FvH4_2g22400 Fragaria vesca HOM05D001069 ORTHO05D001549 2.6e-07 58.2 55 47.3
FAN27G3170 Fragaria x ananassa HOM05D001069 ORTHO05D001549 2.6e-07 58.2 55 47.3
PGSC0003DMG400005328 Solanum tuberosum HOM05D001069 ORTHO05D001549 2.6e-07 58.2 56 51.8
SGA_v2.0_scaffold1G00566 Striga asiatica HOM05D001069 ORTHO05D001549 2.6e-07 58.2 57 52.6
TAR633G1901 Trochodendron aralioides HOM05D001069 ORTHO05D001549 4.5e-07 57.4 55 45.5
TAR636G2667 Trochodendron aralioides HOM05D001069 ORTHO05D001549 4.5e-07 57.4 54 51.9
VMungo0720G3104 Vigna mungo HOM05D001069 ORTHO05D001549 4.5e-07 57.4 57 45.6
Nitab4.5_0000187g0270 Nicotiana tabacum HOM05D001069 ORTHO05D001549 5.9e-07 57.0 55 49.1
Phvul.007G177500 Phaseolus vulgaris HOM05D001069 ORTHO05D001549 7.7e-07 56.6 55 47.3
Duzib177G1087 Durio zibethinus HOM05D001069 ORTHO05D001549 1.0e-06 56.2 55 49.1
PSO017G4229 Papaver somniferum HOM05D001069 ORTHO05D001549 1.0e-06 56.2 54 46.3
CSS0001213 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D001549 1.3e-06 55.8 55 47.3
CSS0046715 Camellia sinensis var. sinensis HOM05D001069 ORTHO05D001549 1.3e-06 55.8 55 47.3
Phvul.007G187800 Phaseolus vulgaris HOM05D001069 ORTHO05D001549 1.3e-06 55.8 54 48.1
Sc06g0003680 Simmondsia chinensis HOM05D001069 ORTHO05D001549 1.3e-06 55.8 57 49.1
VMungo0720G0290 Vigna mungo HOM05D001069 ORTHO05D001549 1.3e-06 55.8 54 48.1
Atru.chr2.834 Acer truncatum HOM05D001069 ORTHO05D001549 1.7e-06 55.5 55 49.1
TAR362G0632 Trochodendron aralioides HOM05D001069 ORTHO05D001549 1.7e-06 55.5 55 47.3
Gohir.A11G249000 Gossypium hirsutum HOM05D001069 ORTHO05D001549 2.9e-06 54.7 55 47.3
Gohir.D11G259800 Gossypium hirsutum HOM05D001069 ORTHO05D001549 2.9e-06 54.7 55 47.3
Gorai.007G278000 Gossypium raimondii HOM05D001069 ORTHO05D001549 2.9e-06 54.7 55 47.3
PSO170G5329 Papaver somniferum HOM05D001069 ORTHO05D001549 2.9e-06 54.7 53 47.2
unitig_22.g5465 Utricularia gibba HOM05D001069 ORTHO05D001549 2.9e-06 54.7 58 48.3
arahy.Tifrunner.gnm1.ann1.8YHQ6Y Arachis hypogaea HOM05D001069 ORTHO05D001549 3.8e-06 54.3 54 46.3
arahy.Tifrunner.gnm1.ann1.V7CRUC Arachis hypogaea HOM05D001069 ORTHO05D001549 3.8e-06 54.3 54 46.3
Glyma.10G162800 Glycine max HOM05D001069 ORTHO05D001549 3.8e-06 54.3 54 46.3
Lalb_Chr21g0311001 Lupinus albus HOM05D001069 ORTHO05D001549 3.8e-06 54.3 54 46.3
Ca_09425_v3 Cicer arietinum L. HOM05D001069 ORTHO05D001549 5.0e-06 53.9 54 48.1
Lj5g0021522 Lotus japonicus HOM05D001069 ORTHO05D001549 5.0e-06 53.9 54 46.3
Sabra10G0065300 Salix brachista HOM05D001069 ORTHO05D001549 5.0e-06 53.9 54 48.1
Ciclev10028433m.g Citrus clementina HOM05D001069 ORTHO05D001549 6.5e-06 53.5 55 47.3
Glyma.20G225400 Glycine max HOM05D001069 ORTHO05D001549 6.5e-06 53.5 54 46.3
Thecc.05G281300 Theobroma cacao HOM05D001069 ORTHO05D001549 6.5e-06 53.5 55 47.3
Eucgr.B02121 Eucalyptus grandis HOM05D001069 ORTHO05D001549 8.5e-06 53.1 55 49.1


User provided reference genes

Program Settings