Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p16880 Brassica napus HOM05D004740 ORTHO05D005991 1.9e-136 489.2 252 100.0
BraA03t10976Z Brassica rapa HOM05D004740 ORTHO05D005991 1.9e-136 489.2 252 100.0
BcaC01g06023 Brassica carinata HOM05D004740 ORTHO05D005991 7.9e-90 334.3 198 91.4
BolC3t14364H Brassica oleracea HOM05D004740 ORTHO05D005991 7.9e-90 334.3 198 91.4
BraA04t17832Z Brassica rapa HOM05D004740 ORTHO05D005991 3.9e-89 332.0 198 90.9
AL4G25030 Arabidopsis lyrata HOM05D004740 ORTHO05D005991 8.7e-89 330.9 198 90.4
Sp4g12790 Schrenkiella parvula HOM05D004740 ORTHO05D005991 1.1e-88 330.5 198 90.4
AT2G30200 Arabidopsis thaliana HOM05D004740 ORTHO05D005991 1.5e-88 330.1 198 90.4
CARHR123500 Cardamine hirsuta HOM05D004740 ORTHO05D005991 1.5e-88 330.1 198 89.9
BcaB02g10307 Brassica carinata HOM05D004740 ORTHO05D005991 3.3e-88 328.9 198 89.9
Thhalv10016751m.g Eutrema salsugineum HOM05D004740 ORTHO05D005991 4.3e-88 328.6 198 89.9
BcaC02g11103 Brassica carinata HOM05D004740 ORTHO05D005991 5.6e-88 328.2 198 89.4
BcaB01g04122 Brassica carinata HOM05D004740 ORTHO05D005991 7.4e-88 327.8 198 89.4
C04p59110 Brassica napus HOM05D004740 ORTHO05D005991 7.4e-88 327.8 198 89.4
BolC4t27422H Brassica oleracea HOM05D004740 ORTHO05D005991 7.4e-88 327.8 198 89.4
BcaC02g08041 Brassica carinata HOM05D004740 ORTHO05D005991 1.6e-87 326.6 198 88.9
BcaB06g28350 Brassica carinata HOM05D004740 ORTHO05D005991 1.1e-86 323.9 198 87.4
C04p20390 Brassica napus HOM05D004740 ORTHO05D005991 1.4e-86 323.6 199 88.9
BolC4t23568H Brassica oleracea HOM05D004740 ORTHO05D005991 1.4e-86 323.6 199 88.9
A05p15240 Brassica napus HOM05D004740 ORTHO05D005991 1.8e-86 323.2 199 88.9
BraA05t20443Z Brassica rapa HOM05D004740 ORTHO05D005991 1.8e-86 323.2 199 88.9
Carub.0004s1135 Capsella rubella HOM05D004740 ORTHO05D005991 1.8e-86 323.2 198 88.4
Aa31LG5G6500 Aethionema arabicum HOM05D004740 ORTHO05D005991 3.1e-86 322.4 207 85.5
Sed0001589 Sechium edule HOM05D004740 ORTHO05D005991 1.3e-84 317.0 198 85.4
arahy.Tifrunner.gnm1.ann1.MX8U3M Arachis hypogaea HOM05D004740 ORTHO05D005991 8.4e-84 314.3 198 84.8
arahy.Tifrunner.gnm1.ann1.T9C115 Arachis hypogaea HOM05D004740 ORTHO05D005991 8.4e-84 314.3 198 84.8
MELO3C020514.2 Cucumis melo HOM05D004740 ORTHO05D005991 8.4e-84 314.3 198 84.8
CsaV3_1G036540 Cucumis sativus L. HOM05D004740 ORTHO05D005991 8.4e-84 314.3 198 85.4
QL01p026440 Quercus lobata HOM05D004740 ORTHO05D005991 1.4e-83 313.5 197 83.8
Lj6g0008641 Lotus japonicus HOM05D004740 ORTHO05D005991 1.9e-83 313.2 198 83.8
arahy.Tifrunner.gnm1.ann1.FJ253B Arachis hypogaea HOM05D004740 ORTHO05D005991 2.5e-83 312.8 198 84.3
CiPaw.13G069800 Carya illinoinensis HOM05D004740 ORTHO05D005991 4.2e-83 312.0 198 83.3
CSS0045632 Camellia sinensis var. sinensis HOM05D004740 ORTHO05D005991 5.5e-83 311.6 198 83.3
Potri.009G077800 Populus trichocarpa HOM05D004740 ORTHO05D005991 5.5e-83 311.6 198 83.3
Gohir.A03G025700 Gossypium hirsutum HOM05D004740 ORTHO05D005991 9.3e-83 310.8 198 83.8
Gohir.D03G142800 Gossypium hirsutum HOM05D004740 ORTHO05D005991 1.6e-82 310.1 198 83.3
Gorai.003G150000 Gossypium raimondii HOM05D004740 ORTHO05D005991 2.1e-82 309.7 198 83.3
Peaxi162Scf00055g00057 Petunia axillaris HOM05D004740 ORTHO05D005991 4.6e-82 308.5 198 82.8
Sabra09G0059400 Salix brachista HOM05D004740 ORTHO05D005991 6.0e-82 308.1 198 82.3
Duzib168G1324 Durio zibethinus HOM05D004740 ORTHO05D005991 7.9e-82 307.8 198 83.3
TAR623G0659 Trochodendron aralioides HOM05D004740 ORTHO05D005991 7.9e-82 307.8 231 73.2
Haze_24407 Corylus avellana HOM05D004740 ORTHO05D005991 1.0e-81 307.4 198 81.8
arahy.Tifrunner.gnm1.ann1.R7F6LC Arachis hypogaea HOM05D004740 ORTHO05D005991 2.3e-81 306.2 240 71.2
Glyma.18G057700 Glycine max HOM05D004740 ORTHO05D005991 2.3e-81 306.2 198 82.3
Lalb_Chr18g0051371 Lupinus albus HOM05D004740 ORTHO05D005991 2.3e-81 306.2 198 81.8
THA.LOC104826277 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 3.0e-81 305.8 198 82.3
Cpa.g.sc2.364 Carica papaya HOM05D004740 ORTHO05D005991 3.9e-81 305.4 198 82.3
MD03G1055800 Malus domestica HOM05D004740 ORTHO05D005991 5.1e-81 305.1 198 81.3
MD11G1056800 Malus domestica HOM05D004740 ORTHO05D005991 5.1e-81 305.1 198 81.8
COL.COLO4_11143 Corchorus olitorius HOM05D004740 ORTHO05D005991 8.7e-81 304.3 198 82.3
Cfa011772 Carpinus fangiana HOM05D004740 ORTHO05D005991 1.1e-80 303.9 198 80.8
Rhsim13G0064700 Rhododendron simsii HOM05D004740 ORTHO05D005991 1.1e-80 303.9 198 81.3
Nitab4.5_0002737g0070 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.5e-80 303.5 198 81.8
Psat5g153440 Pisum sativum HOM05D004740 ORTHO05D005991 1.5e-80 303.5 198 80.8
CANSAT54G2578 Cannabis sativa HOM05D004740 ORTHO05D005991 1.9e-80 303.1 198 80.8
Dinv28694 Davidia involucrata HOM05D004740 ORTHO05D005991 1.9e-80 303.1 198 80.8
GSVIVG01024639001 Vitis vinifera HOM05D004740 ORTHO05D005991 3.3e-80 302.4 200 80.5
Ca_15002_v3 Cicer arietinum L. HOM05D004740 ORTHO05D005991 4.3e-80 302.0 198 80.8
Cc01_g14810 Coffea canephora HOM05D004740 ORTHO05D005991 4.3e-80 302.0 198 80.8
Nitab4.5_0001121g0110 Nicotiana tabacum HOM05D004740 ORTHO05D005991 4.3e-80 302.0 198 81.8
PGSC0003DMG400021362 Solanum tuberosum HOM05D004740 ORTHO05D005991 4.3e-80 302.0 198 81.3
Thecc.09G357100 Theobroma cacao HOM05D004740 ORTHO05D005991 4.3e-80 302.0 198 80.3
vmacro02923 Vaccinium macrocarpon HOM05D004740 ORTHO05D005991 4.3e-80 302.0 198 80.8
Glyma.11G164500 Glycine max HOM05D004740 ORTHO05D005991 5.7e-80 301.6 198 81.3
CiPaw.14G054500 Carya illinoinensis HOM05D004740 ORTHO05D005991 7.4e-80 301.2 197 79.7
PGR102G2346 Punica granatum HOM05D004740 ORTHO05D005991 7.4e-80 301.2 198 80.3
Solyc01g006980.4 Solanum lycopersicum HOM05D004740 ORTHO05D005991 9.7e-80 300.8 198 80.3
Sopen01g002970 Solanum pennellii HOM05D004740 ORTHO05D005991 9.7e-80 300.8 198 80.3
CAN.G911.42 Capsicum annuum HOM05D004740 ORTHO05D005991 1.3e-79 300.4 198 80.3
Phvul.006G073300 Phaseolus vulgaris HOM05D004740 ORTHO05D005991 1.3e-79 300.4 198 81.3
Prupe.6G048900 Prunus persica HOM05D004740 ORTHO05D005991 1.3e-79 300.4 198 80.3
THA.LOC104800771 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 1.3e-79 300.4 198 81.3
Ah.15g096090 Amaranthus hybridus HOM05D004740 ORTHO05D005991 1.6e-79 300.1 198 79.3
Ciclev10028558m.g Citrus clementina HOM05D004740 ORTHO05D005991 2.2e-79 299.7 198 80.8
Lalb_Chr15g0083211 Lupinus albus HOM05D004740 ORTHO05D005991 2.2e-79 299.7 198 80.8
Manes.18G127700 Manihot esculenta HOM05D004740 ORTHO05D005991 2.8e-79 299.3 198 79.8
Medtr3g031380 Medicago truncatula HOM05D004740 ORTHO05D005991 2.8e-79 299.3 198 79.8
TPR.G35611 Trifolium pratense HOM05D004740 ORTHO05D005991 2.8e-79 299.3 198 79.8
ClCG03G000380 Citrullus lanatus HOM05D004740 ORTHO05D005991 3.7e-79 298.9 231 72.3
Migut.N00764 Erythranthe guttata HOM05D004740 ORTHO05D005991 6.3e-79 298.1 198 81.8
CDE06G2756 Ceratophyllum demersum HOM05D004740 ORTHO05D005991 8.2e-79 297.7 198 79.3
Os03g0297400 Oryza sativa ssp. japonica HOM05D004740 ORTHO05D005991 8.2e-79 297.7 198 77.8
DCAR_018228 Daucus carota HOM05D004740 ORTHO05D005991 1.1e-78 297.4 198 78.8
Hund29009 Selenicereus undatus HOM05D004740 ORTHO05D005991 1.1e-78 297.4 198 78.3
Hund29013 Selenicereus undatus HOM05D004740 ORTHO05D005991 1.1e-78 297.4 198 78.3
TWI75G0989 Tripterygium wilfordii HOM05D004740 ORTHO05D005991 1.8e-78 296.6 198 78.8
FvH4_3g39690 Fragaria vesca HOM05D004740 ORTHO05D005991 3.1e-78 295.8 198 78.8
MBI05_g35601_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D005991 3.1e-78 295.8 198 78.8
EL10Ac7g15913 Beta vulgaris HOM05D004740 ORTHO05D005991 4.1e-78 295.4 198 78.3
Aqoxy2G00789 Aquilegia oxysepala HOM05D004740 ORTHO05D005991 5.3e-78 295.0 198 78.8
Eucgr.J01859 Eucalyptus grandis HOM05D004740 ORTHO05D005991 5.3e-78 295.0 198 78.8
SGA_v2.0_scaffold146G36123 Striga asiatica HOM05D004740 ORTHO05D005991 5.3e-78 295.0 198 79.8
TAR633G1387 Trochodendron aralioides HOM05D004740 ORTHO05D005991 5.3e-78 295.0 198 80.3
MSTRG.17889 Avicennia marina HOM05D004740 ORTHO05D005991 9.0e-78 294.3 198 78.8
Lj2A1092T52 Lonicera japonica HOM05D004740 ORTHO05D005991 1.2e-77 293.9 198 78.3
VMungo0540G0639 Vigna mungo HOM05D004740 ORTHO05D005991 1.5e-77 293.5 198 80.3
RcHm_v2.0_Chr5g0071571 Rosa chinensis HOM05D004740 ORTHO05D005991 2.0e-77 293.1 198 77.8
ATR0594G208 Amborella trichopoda HOM05D004740 ORTHO05D005991 3.4e-77 292.4 198 77.8
HPP92_013770 Vanilla planifolia HOM05D004740 ORTHO05D005991 4.5e-77 292.0 198 77.8
SalBow2G1640 Salvia bowleyana HOM05D004740 ORTHO05D005991 5.9e-77 291.6 198 77.8
Sc12g0002010 Simmondsia chinensis HOM05D004740 ORTHO05D005991 5.9e-77 291.6 198 77.3
ECA248G3413 Erigeron canadensis HOM05D004740 ORTHO05D005991 1.3e-76 290.4 198 76.8
Zm00001eb013760 Zea mays HOM05D004740 ORTHO05D005991 2.2e-76 289.7 198 76.3
HanXRQChr01g0012131 Helianthus annuus HOM05D004740 ORTHO05D005991 2.9e-76 289.3 198 76.8
PSO339G6109 Papaver somniferum HOM05D004740 ORTHO05D005991 2.9e-76 289.3 198 78.3
HanXRQChr01g0012161 Helianthus annuus HOM05D004740 ORTHO05D005991 3.8e-76 288.9 198 77.3
PSO801G0690 Papaver somniferum HOM05D004740 ORTHO05D005991 5.0e-76 288.5 198 78.3
FAN25G0671 Fragaria x ananassa HOM05D004740 ORTHO05D005991 8.5e-76 287.7 221 70.6
FAN11G1726 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.4e-75 287.0 221 70.6
FAN16G0900 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.4e-75 287.0 221 70.6
FAN21G3316 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.4e-75 287.0 221 70.6
FAN21G3649 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.4e-75 287.0 221 70.6
AUR62001878 Chenopodium quinoa HOM05D004740 ORTHO05D005991 2.5e-75 286.2 198 75.3
SEGI_23058 Sequoiadendron giganteum HOM05D004740 ORTHO05D005991 2.5e-75 286.2 200 76.5
arahy.Tifrunner.gnm1.ann1.C8ZV0S Arachis hypogaea HOM05D004740 ORTHO05D005991 7.2e-75 284.6 208 75.5
unitig_60.g25555 Utricularia gibba HOM05D004740 ORTHO05D005991 9.4e-75 284.3 200 75.0
AUR62009675 Chenopodium quinoa HOM05D004740 ORTHO05D005991 1.6e-74 283.5 198 74.2
Pp3c20_19160 Physcomitrium patens HOM05D004740 ORTHO05D005991 2.8e-71 272.7 199 72.4
Lsat_1_v5_gn_5_174621 Lactuca sativa HOM05D004740 ORTHO05D005991 6.9e-70 268.1 225 64.4
Nn2g13251 Nelumbo nucifera HOM05D004740 ORTHO05D005991 9.1e-70 267.7 179 79.3
Mapoly0009s0078 Marchantia polymorpha HOM05D004740 ORTHO05D005991 1.5e-69 266.9 198 70.2
SMO200G0259 Selaginella moellendorffii HOM05D004740 ORTHO05D005991 3.2e-67 259.2 201 68.7
Sed0003355 Sechium edule HOM05D004740 ORTHO05D005991 5.5e-67 258.5 178 77.0
AagrBONN_evm.TU.Sc2ySwM_228.2654 Anthoceros agrestis HOM05D004740 ORTHO05D005991 1.6e-66 256.9 199 67.3
PRCOL_00005899 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 9.7e-64 247.7 201 64.2
Atru.chr3.4126 Acer truncatum HOM05D004740 ORTHO05D005991 2.2e-63 246.5 198 70.7
C03p19860 Brassica napus HOM05D004740 ORTHO05D005991 1.8e-62 243.4 149 89.3
Cre14.g621650 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 4.1e-62 242.3 200 64.0
A04p22970 Brassica napus HOM05D004740 ORTHO05D005991 1.2e-61 240.7 148 89.2
Actinidia32613 Actinidia chinensis HOM05D004740 ORTHO05D005991 1.3e-60 237.3 198 68.2
SHI19203 Sapria himalayana HOM05D004740 ORTHO05D005991 3.8e-60 235.7 260 54.6
CBR_g33923 Chara braunii HOM05D004740 ORTHO05D005991 6.3e-55 218.4 199 58.8
MCO01G413 Micromonas commoda HOM05D004740 ORTHO05D005991 1.0e-52 211.1 201 55.7
Potri.001G282600 Populus trichocarpa HOM05D004740 ORTHO05D005991 4.5e-45 185.7 130 77.7
Actinidia23202 Actinidia chinensis HOM05D004740 ORTHO05D005991 5.0e-44 182.2 186 61.3
Nn2g10995 Nelumbo nucifera HOM05D004740 ORTHO05D005991 3.5e-37 159.5 198 55.1
Actinidia02620 Actinidia chinensis HOM05D004740 ORTHO05D005991 5.0e-36 155.6 158 58.2
Nitab4.5_0006359g0020 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.1e-35 154.5 135 64.4
Nitab4.5_0006126g0030 Nicotiana tabacum HOM05D004740 ORTHO05D005991 2.6e-32 143.3 157 54.1
PRCOL_00000466 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 7.3e-27 125.2 190 38.9
Cre02.g088250 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 3.4e-24 116.3 204 39.2
Oeu005355.3 Olea europaea HOM05D003290 ORTHO05D005991 5.8e-24 115.5 95 68.4
MCO04G051 Micromonas commoda HOM05D004740 ORTHO05D005991 9.2e-22 108.2 187 35.8
Zm00001eb396720 Zea mays HOM05D004740 ORTHO05D444996 4.6e-21 105.9 80 71.2
Nitab4.5_0000644g0120 Nicotiana tabacum HOM05D004740 ORTHO05D005991 8.9e-17 91.7 60 78.3
COL.COLO4_24546 Corchorus olitorius HOM05D004740 ORTHO05D008255 1.2e-16 91.3 87 65.5
Nitab4.5_0000644g0100 Nicotiana tabacum HOM05D004740 ORTHO05D284956 1.1e-14 84.7 48 89.6
HPP92_012003 Vanilla planifolia HOM05D004740 ORTHO05D429499 7.1e-14 82.0 77 58.4
VMungo0331G0938 Vigna mungo HOM05D000577 ORTHO05D001093 7.8e-13 78.6 62 67.7
MBI10_g37352_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D241996 1.3e-12 77.8 75 56.0
MBI15_g35007_MAGBIO Magnolia biondii HOM05D000363 ORTHO05D017376 2.6e-08 63.5 43 72.1


User provided reference genes

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