Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p16290 Brassica napus HOM05D004971 ORTHO05D006289 6.2e-150 534.3 302 100.0
BraA03t10920Z Brassica rapa HOM05D004971 ORTHO05D006289 6.2e-142 507.7 303 96.0
C03p19180 Brassica napus HOM05D004971 ORTHO05D006289 1.3e-136 490.0 308 81.8
BcaC01g06098 Brassica carinata HOM05D004971 ORTHO05D006289 1.8e-136 489.6 308 90.6
BolC3t14306H Brassica oleracea HOM05D004971 ORTHO05D006289 1.8e-136 489.6 308 90.6
BcaC01g06076 Brassica carinata HOM05D004971 ORTHO05D006289 8.2e-134 480.7 255 93.3
BcaC03g14623 Brassica carinata HOM05D004971 ORTHO05D006289 1.6e-121 439.9 261 83.5
BolC2t08195H Brassica oleracea HOM05D004971 ORTHO05D006289 1.6e-121 439.9 261 83.5
Sp6g13340 Schrenkiella parvula HOM05D004971 ORTHO05D006289 2.1e-121 439.5 263 84.4
C02p20580 Brassica napus HOM05D004971 ORTHO05D006289 1.8e-120 436.4 261 83.1
BcaB05g24018 Brassica carinata HOM05D004971 ORTHO05D006289 2.3e-120 436.0 254 83.1
BraA02t06311Z Brassica rapa HOM05D004971 ORTHO05D006289 2.3e-120 436.0 263 82.1
A02p12480 Brassica napus HOM05D004971 ORTHO05D006289 3.9e-120 435.3 262 82.4
CARHR256940 Cardamine hirsuta HOM05D004971 ORTHO05D006289 5.1e-120 434.9 256 83.2
Thhalv10014188m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.4e-117 426.8 256 81.6
AT5G51130 Arabidopsis thaliana HOM05D004971 ORTHO05D006289 1.8e-117 426.4 262 80.9
AL8G25390 Arabidopsis lyrata HOM05D004971 ORTHO05D006289 1.5e-116 423.3 262 81.3
Carub.0008s1117 Capsella rubella HOM05D004971 ORTHO05D006289 3.4e-116 422.2 262 80.9
THA.LOC104811095 Tarenaya hassleriana HOM05D004971 ORTHO05D006289 5.5e-106 388.3 264 73.9
Aa31LG3G7640 Aethionema arabicum HOM05D004971 ORTHO05D006289 5.2e-104 381.7 256 72.7
Lalb_Chr05g0223101 Lupinus albus HOM05D004971 ORTHO05D006289 1.1e-90 337.4 262 61.8
CiPaw.03G227700 Carya illinoinensis HOM05D004971 ORTHO05D006289 1.9e-90 336.7 264 63.3
Prupe.7G224700 Prunus persica HOM05D004971 ORTHO05D006289 4.2e-90 335.5 262 60.3
CANSAT56G2306 Cannabis sativa HOM05D004971 ORTHO05D006289 1.2e-89 334.0 268 59.3
Sabra18G0073100 Salix brachista HOM05D004971 ORTHO05D006289 3.6e-89 332.4 258 62.8
Potri.018G084700 Populus trichocarpa HOM05D004971 ORTHO05D006289 6.1e-89 331.6 258 63.2
CANSAT56G1645 Cannabis sativa HOM05D004971 ORTHO05D006289 3.0e-88 329.3 268 59.0
Eucgr.C03795 Eucalyptus grandis HOM05D004971 ORTHO05D006289 3.0e-88 329.3 266 62.0
Thecc.09G104800 Theobroma cacao HOM05D004971 ORTHO05D006289 6.8e-88 328.2 264 61.4
Atru.chr7.1418 Acer truncatum HOM05D004971 ORTHO05D006289 8.8e-88 327.8 263 61.6
PGR102G0147 Punica granatum HOM05D004971 ORTHO05D006289 2.6e-87 326.2 253 62.8
Glyma.08G035500 Glycine max HOM05D004971 ORTHO05D006289 3.4e-87 325.9 262 59.9
Phvul.002G310900 Phaseolus vulgaris HOM05D004971 ORTHO05D006289 4.4e-87 325.5 261 61.3
MD15G1192600 Malus domestica HOM05D004971 ORTHO05D006289 1.3e-86 323.9 249 62.7
QL01p004043 Quercus lobata HOM05D004971 ORTHO05D006289 1.7e-86 323.6 258 64.7
VMungo0251G3379 Vigna mungo HOM05D004971 ORTHO05D006289 6.3e-86 321.6 262 59.9
GSVIVG01015340001 Vitis vinifera HOM05D004971 ORTHO05D006289 9.1e-85 317.8 267 59.6
RcHm_v2.0_Chr2g0091361 Rosa chinensis HOM05D004971 ORTHO05D006289 1.6e-84 317.0 261 58.6
Medtr8g102950 Medicago truncatula HOM05D004971 ORTHO05D006289 4.5e-84 315.5 266 59.4
Lj4g0001585 Lotus japonicus HOM05D004971 ORTHO05D006289 1.0e-83 314.3 256 59.8
AUR62021639 Chenopodium quinoa HOM05D004971 ORTHO05D006289 2.3e-83 313.2 268 58.2
Dinv41645 Davidia involucrata HOM05D004971 ORTHO05D006289 1.5e-82 310.5 266 59.0
COL.COLO4_34800 Corchorus olitorius HOM05D004971 ORTHO05D006289 3.3e-82 309.3 244 63.1
Hund26242 Selenicereus undatus HOM05D004971 ORTHO05D006289 3.3e-82 309.3 261 58.2
arahy.Tifrunner.gnm1.ann1.050WC1 Arachis hypogaea HOM05D004971 ORTHO05D006289 7.2e-82 308.1 274 54.4
FAN19G1252 Fragaria x ananassa HOM05D001382 ORTHO05D001266 7.2e-82 308.1 258 57.8
TWI12G1172 Tripterygium wilfordii HOM05D004971 ORTHO05D006289 9.5e-82 307.8 254 57.5
Gohir.D07G007800 Gossypium hirsutum HOM05D004971 ORTHO05D006289 1.2e-81 307.4 263 57.8
Gorai.001G007500 Gossypium raimondii HOM05D004971 ORTHO05D006289 1.2e-81 307.4 263 57.8
Solyc05g050000.3 Solanum lycopersicum HOM05D004971 ORTHO05D006289 1.6e-81 307.0 265 56.6
CSS0031404 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 2.1e-81 306.6 266 58.3
FvH4_1g05710 Fragaria vesca HOM05D004971 ORTHO05D006289 3.6e-81 305.8 261 57.9
FAN26G3039 Fragaria x ananassa HOM05D001382 ORTHO05D001266 4.7e-81 305.4 261 57.5
MSTRG.19566 Avicennia marina HOM05D004971 ORTHO05D006289 8.0e-81 304.7 266 58.3
Cc06_g10130 Coffea canephora HOM05D004971 ORTHO05D006289 1.0e-80 304.3 252 60.3
FAN28G1806 Fragaria x ananassa HOM05D001382 ORTHO05D006289 1.4e-80 303.9 261 57.5
Nitab4.5_0000066g0130 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.8e-80 303.5 265 56.6
SGA_v2.0_scaffold20G09148 Striga asiatica HOM05D004971 ORTHO05D006289 1.8e-80 303.5 261 59.0
Sopen05g028390 Solanum pennellii HOM05D004971 ORTHO05D006289 2.3e-80 303.1 265 55.8
FAN23G0317 Fragaria x ananassa HOM05D001382 ORTHO05D006289 3.0e-80 302.8 261 57.1
TPR.G23453 Trifolium pratense HOM05D004971 ORTHO05D006289 3.0e-80 302.8 262 57.6
Nitab4.5_0003331g0010 Nicotiana tabacum HOM05D004971 ORTHO05D006289 5.2e-80 302.0 265 56.2
Gohir.A07G004400 Gossypium hirsutum HOM05D004971 ORTHO05D006289 6.8e-80 301.6 263 56.7
Rhsim03G0239000 Rhododendron simsii HOM05D004971 ORTHO05D006289 6.8e-80 301.6 257 58.4
Migut.J01131 Erythranthe guttata HOM05D004971 ORTHO05D006289 1.2e-79 300.8 254 58.3
Nn3g18146 Nelumbo nucifera HOM05D004971 ORTHO05D006289 2.6e-79 299.7 266 55.3
ECA240G1764 Erigeron canadensis HOM05D004971 ORTHO05D006289 3.4e-79 299.3 261 55.9
Lsat_1_v5_gn_7_41360 Lactuca sativa HOM05D004971 ORTHO05D006289 3.4e-79 299.3 249 57.8
ClCG06G008900 Citrullus lanatus HOM05D004971 ORTHO05D006289 4.4e-79 298.9 244 61.5
SGA_v2.0_scaffold22G09903 Striga asiatica HOM05D004971 ORTHO05D006289 4.4e-79 298.9 260 56.9
HanXRQChr09g0239411 Helianthus annuus HOM05D004971 ORTHO05D006289 7.5e-79 298.1 261 56.3
Peaxi162Scf00539g00614 Petunia axillaris HOM05D004971 ORTHO05D006289 1.7e-78 297.0 252 58.3
TAR636G2606 Trochodendron aralioides HOM05D004971 ORTHO05D006289 2.2e-78 296.6 266 56.0
TAR626G1908 Trochodendron aralioides HOM05D001382 ORTHO05D006289 2.9e-78 296.2 266 56.0
Psat7g014440 Pisum sativum HOM05D004971 ORTHO05D006289 3.7e-78 295.8 246 60.2
Oeu000366.2 Olea europaea HOM05D004971 ORTHO05D006289 6.4e-78 295.0 282 53.5
Os08g0540500 Oryza sativa ssp. japonica HOM05D004971 ORTHO05D006289 4.1e-77 292.4 253 54.2
Sc08g0007770 Simmondsia chinensis HOM05D004971 ORTHO05D006289 9.2e-77 291.2 266 56.0
PSO541G6366 Papaver somniferum HOM05D004971 ORTHO05D006289 1.6e-76 290.4 260 54.2
PSO675G4950 Papaver somniferum HOM05D004971 ORTHO05D006289 1.6e-76 290.4 260 55.4
Aqoxy7G01513 Aquilegia oxysepala HOM05D004971 ORTHO05D006289 1.0e-75 287.7 259 55.2
arahy.Tifrunner.gnm1.ann1.R8N6MQ Arachis hypogaea HOM05D004971 ORTHO05D006289 1.3e-75 287.3 271 52.0
CAN.G399.3 Capsicum annuum HOM05D004971 ORTHO05D006289 1.1e-74 284.3 240 57.9
Thhalv10006518m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 4.3e-74 282.3 207 69.6
Thhalv10027230m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 4.3e-74 282.3 207 69.6
unitig_748.g8739 Utricularia gibba HOM05D004971 ORTHO05D006289 5.6e-74 282.0 250 54.4
AUR62008451 Chenopodium quinoa HOM05D004971 ORTHO05D006289 3.6e-73 279.3 250 56.4
SHI02711 Sapria himalayana HOM05D004971 ORTHO05D006289 6.2e-73 278.5 261 55.9
PGSC0003DMG400021659 Solanum tuberosum HOM05D004971 ORTHO05D006289 6.2e-73 278.5 251 55.0
Ciclev10009268m.g Citrus clementina HOM05D004971 ORTHO05D006289 1.4e-72 277.3 246 56.5
HPP92_012921 Vanilla planifolia HOM05D004971 ORTHO05D006289 5.2e-72 275.4 265 52.1
HPP92_012900 Vanilla planifolia HOM05D004971 ORTHO05D006289 1.2e-71 274.2 260 52.7
CsaV3_1G020790 Cucumis sativus L. HOM05D004971 ORTHO05D006289 2.6e-71 273.1 250 56.0
Thhalv10027350m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 3.4e-71 272.7 214 66.4
Thhalv10026861m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 2.2e-70 270.0 207 66.7
Thhalv10027410m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 2.2e-70 270.0 207 66.7
HanXRQChr03g0061421 Helianthus annuus HOM05D004971 ORTHO05D006289 9.2e-69 264.6 245 51.4
Cfa003218 Carpinus fangiana HOM05D001382 ORTHO05D001266 7.8e-68 261.5 216 59.7
MELO3C024707.2 Cucumis melo HOM05D004971 ORTHO05D006289 1.3e-67 260.8 254 52.0
Actinidia32663 Actinidia chinensis HOM05D004971 ORTHO05D006289 3.0e-67 259.6 266 52.3
Oeu017816.1 Olea europaea HOM05D004971 ORTHO05D006289 3.0e-67 259.6 240 55.8
Sed0000382 Sechium edule HOM05D004971 ORTHO05D006289 3.9e-67 259.2 220 57.3
AagrBONN_evm.TU.Sc2ySwM_117.3390 Anthoceros agrestis HOM05D004971 ORTHO05D006289 2.5e-66 256.5 248 50.4
Manes.16G112100 Manihot esculenta HOM05D004971 ORTHO05D006289 5.6e-66 255.4 207 59.9
Lj7A659G31 Lonicera japonica HOM05D004971 ORTHO05D006289 1.6e-65 253.8 238 55.5
vmacro06238 Vaccinium macrocarpon HOM05D004971 ORTHO05D006289 2.3e-64 250.0 295 47.1
Mapoly0002s0233 Marchantia polymorpha HOM05D004971 ORTHO05D006289 3.9e-59 232.6 287 42.5
CDE11G0552 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 1.5e-58 230.7 258 46.9
SEGI_33858 Sequoiadendron giganteum HOM05D004971 ORTHO05D006289 1.5e-58 230.7 328 40.5
Lalb_Chr14g0371731 Lupinus albus HOM05D004971 ORTHO05D006289 1.9e-58 230.3 255 45.9
SMO232G0003 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 4.3e-58 229.2 256 43.4
DCAR_028679 Daucus carota HOM05D004971 ORTHO05D006289 5.6e-58 228.8 257 48.6
SMO241G0030 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 2.3e-56 223.4 258 42.6
Duzib150G1337 Durio zibethinus HOM05D004971 ORTHO05D006289 6.4e-54 215.3 187 56.7
Nitab4.5_0002165g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 9.2e-53 211.5 249 45.8
Pp3c17_15270 Physcomitrium patens HOM05D004971 ORTHO05D006289 1.0e-51 208.0 267 38.6
Lalb_Chr24g0397391 Lupinus albus HOM05D004971 ORTHO05D006289 4.9e-46 189.1 179 49.7
CSS0049746 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 3.2e-45 186.4 194 52.6
ATR0315G075 Amborella trichopoda HOM05D004971 ORTHO05D006289 4.2e-45 186.0 196 49.0
MD02G1058100 Malus domestica HOM05D004971 ORTHO05D006289 2.1e-44 183.7 233 42.1
CDE05G3470 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 1.8e-40 170.6 123 65.0
MCO09G154 Micromonas commoda HOM05D004971 ORTHO05D006289 1.5e-39 167.5 285 34.0
EL10Ac8g18422 Beta vulgaris HOM05D004971 ORTHO05D006289 2.4e-37 160.2 139 59.7
CBR_g687 Chara braunii HOM05D004971 ORTHO05D006289 9.3e-37 158.3 416 27.6
Ca_17315_v3 Cicer arietinum L. HOM05D004971 ORTHO05D006289 1.2e-36 157.9 142 57.7
Zm00001eb198370 Zea mays HOM05D004971 ORTHO05D006289 1.3e-35 154.5 145 50.3
Cre15.g636450 Chlamydomonas reinhardtii HOM05D004971 ORTHO05D006289 1.1e-29 134.8 381 27.0
PRCOL_00000240 Prasinoderma coloniale HOM05D004971 ORTHO05D006289 2.1e-28 130.6 303 30.4
arahy.Tifrunner.gnm1.ann1.D57MTL Arachis hypogaea HOM05D004971 ORTHO05D006289 5.1e-27 125.9 140 44.3
MBI04_g02609_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D000022 1.5e-26 124.4 142 47.2
Lj4g0009518 Lotus japonicus HOM05D004971 ORTHO05D006289 5.6e-26 122.5 76 71.1
Haze_02526 Corylus avellana HOM05D004971 ORTHO05D006289 1.6e-25 120.9 130 48.5
arahy.Tifrunner.gnm1.ann1.2J0XRF Arachis hypogaea HOM05D004971 ORTHO05D006289 3.1e-24 116.7 145 40.7
Cpa.g.sc40.24 Carica papaya HOM05D004971 ORTHO05D006289 1.9e-21 107.5 53 84.9
Haze_02523 Corylus avellana HOM05D004971 ORTHO05D006289 7.1e-21 105.5 120 47.5
CSS0032398 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 4.3e-18 96.3 54 72.2
Lalb_Chr24g0397371 Lupinus albus HOM05D004971 ORTHO05D006289 3.7e-17 93.2 130 38.5
Nitab4.5_0002165g0090 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.5e-15 87.8 57 64.9
Actinidia07401 Actinidia chinensis HOM05D004971 ORTHO05D006289 2.0e-15 87.4 56 69.6
MBI19_g42779_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 1.2e-12 78.2 169 34.3
MBI19_g24589_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 1.1e-10 71.6 197 30.5
Nitab4.5_0001706g0070 Nicotiana tabacum HOM05D004971 ORTHO05D006289 7.4e-10 68.9 74 47.3
FvH4_7g02480 Fragaria vesca HOM05D004971 ORTHO05D022553 3.1e-08 63.5 38 68.4
FvH4_7g02600 Fragaria vesca HOM05D004971 ORTHO05D022553 3.1e-08 63.5 38 68.4
CiPaw.05G218700 Carya illinoinensis HOM05D004971 ORTHO05D006289 2.2e-06 57.4 32 71.9
MBI19_g24592_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 8.5e-06 55.5 33 63.6


User provided reference genes

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