Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p15570 Brassica napus HOM05D005974 ORTHO05D007201 3.0e-254 881.3 444 100.0
BcaC01g06194 Brassica carinata HOM05D005974 ORTHO05D007201 2.9e-220 768.5 393 98.7
BolC3t14221H Brassica oleracea HOM05D005974 ORTHO05D007201 2.9e-220 768.5 393 98.7
BcaB01g04210 Brassica carinata HOM05D005974 ORTHO05D007201 4.0e-214 748.0 396 96.2
Sp4g05700 Schrenkiella parvula HOM05D005974 ORTHO05D007201 1.9e-208 729.2 400 93.5
BraA04t17588Z Brassica rapa HOM05D005974 ORTHO05D007201 3.2e-203 711.8 400 91.2
BolC4t27100H Brassica oleracea HOM05D005974 ORTHO05D007201 4.2e-203 711.4 400 91.2
C04p55740 Brassica napus HOM05D005974 ORTHO05D007201 7.1e-203 710.7 395 90.6
A04p20060 Brassica napus HOM05D005974 ORTHO05D007201 2.1e-202 709.1 395 90.6
C03p18200 Brassica napus HOM05D005974 ORTHO05D007201 1.9e-200 702.6 413 88.6
BraA03t10849Z Brassica rapa HOM05D005974 ORTHO05D007201 5.8e-197 691.0 419 88.1
BcaB06g29640 Brassica carinata HOM05D005974 ORTHO05D007201 3.1e-190 668.7 388 87.9
Thhalv10002003m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 6.7e-185 651.0 400 83.0
Thhalv10002006m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 1.1e-184 650.2 395 83.8
AL4G17680 Arabidopsis lyrata HOM05D005974 ORTHO05D007201 1.2e-181 640.2 403 80.6
CARHR115390 Cardamine hirsuta HOM05D005974 ORTHO05D007201 1.4e-179 633.3 402 79.6
AT2G25840 Arabidopsis thaliana HOM05D005974 ORTHO05D007201 1.4e-177 626.7 403 78.9
Carub.0004s0567 Capsella rubella HOM05D005974 ORTHO05D007201 5.1e-177 624.8 409 80.0
THA.LOC104803747 Tarenaya hassleriana HOM05D005974 ORTHO05D007201 2.3e-169 599.4 393 77.1
Potri.003G158000 Populus trichocarpa HOM05D005974 ORTHO05D007201 9.7e-168 594.0 392 75.3
Sabra03G0114600 Salix brachista HOM05D005974 ORTHO05D007201 4.8e-167 591.7 381 76.4
PGR044G0481 Punica granatum HOM05D005974 ORTHO05D007201 6.3e-167 591.3 406 73.4
MSTRG.14030 Avicennia marina HOM05D005974 ORTHO05D007201 8.2e-167 590.9 391 74.7
EL10Ac5g11988 Beta vulgaris HOM05D005974 ORTHO05D007201 1.1e-166 590.5 394 75.6
FAN27G3236 Fragaria x ananassa HOM05D005974 ORTHO05D007201 1.1e-166 590.5 371 77.1
SGA_v2.0_scaffold169G38660 Striga asiatica HOM05D005974 ORTHO05D007201 1.4e-166 590.1 362 79.3
FAN20G0082 Fragaria x ananassa HOM05D005974 ORTHO05D007201 1.8e-166 589.7 397 73.0
Sc09g0009450 Simmondsia chinensis HOM05D005974 ORTHO05D007201 3.1e-166 589.0 344 82.6
FvH4_2g35300 Fragaria vesca HOM05D005974 ORTHO05D007201 4.1e-166 588.6 398 73.6
RcHm_v2.0_Chr6g0306611 Rosa chinensis HOM05D005974 ORTHO05D007201 4.1e-166 588.6 396 73.7
HanXRQChr17g0539061 Helianthus annuus HOM05D005974 ORTHO05D007201 5.3e-166 588.2 375 77.6
Manes.03G060100 Manihot esculenta HOM05D005974 ORTHO05D007201 7.0e-166 587.8 377 76.1
Ciclev10010686m.g Citrus clementina HOM05D005974 ORTHO05D007201 9.1e-166 587.4 361 79.2
FAN15G0062 Fragaria x ananassa HOM05D005974 ORTHO05D007201 1.2e-165 587.0 370 77.0
Eucgr.C02982 Eucalyptus grandis HOM05D005974 ORTHO05D007201 1.6e-165 586.6 360 79.2
Lalb_Chr08g0242951 Lupinus albus HOM05D005974 ORTHO05D007201 2.0e-165 586.3 345 80.6
PGR044G1757 Punica granatum HOM05D005974 ORTHO05D007201 3.5e-165 585.5 390 75.1
Solyc12g095850.2 Solanum lycopersicum HOM05D005974 ORTHO05D007201 5.9e-165 584.7 398 73.4
Lsat_1_v5_gn_3_25800 Lactuca sativa HOM05D005974 ORTHO05D007201 7.7e-165 584.3 398 73.4
HanXRQChr06g0174221 Helianthus annuus HOM05D005974 ORTHO05D007201 1.0e-164 583.9 392 74.2
COL.COLO4_20996 Corchorus olitorius HOM05D005974 ORTHO05D007201 1.7e-164 583.2 361 78.4
Sopen12g031750 Solanum pennellii HOM05D005974 ORTHO05D007201 2.2e-164 582.8 399 72.9
Glyma.06G088000 Glycine max HOM05D005974 ORTHO05D007201 5.0e-164 581.6 350 79.7
CANSAT80G2257 Cannabis sativa HOM05D005974 ORTHO05D007201 6.5e-164 581.3 361 76.7
TWI63G1635 Tripterygium wilfordii HOM05D005974 ORTHO05D007201 1.5e-163 580.1 361 77.8
CiPaw.08G027100 Carya illinoinensis HOM05D005974 ORTHO05D007201 2.5e-163 579.3 361 77.6
Dinv23389 Davidia involucrata HOM05D005974 ORTHO05D007201 4.2e-163 578.6 403 71.5
Migut.E01538 Erythranthe guttata HOM05D005974 ORTHO05D007201 4.2e-163 578.6 360 77.8
Glyma.04G086500 Glycine max HOM05D005974 ORTHO05D007201 4.2e-163 578.6 361 78.4
Nitab4.5_0001309g0090 Nicotiana tabacum HOM05D005974 ORTHO05D007201 4.2e-163 578.6 391 73.7
MD15G1090800 Malus domestica HOM05D005974 ORTHO05D007201 5.5e-163 578.2 372 76.1
ECA246G2549 Erigeron canadensis HOM05D005974 ORTHO05D007201 9.4e-163 577.4 393 73.8
arahy.Tifrunner.gnm1.ann1.CL6SAC Arachis hypogaea HOM05D005974 ORTHO05D007201 1.6e-162 576.6 349 79.4
Phvul.009G111700 Phaseolus vulgaris HOM05D005974 ORTHO05D007201 2.1e-162 576.2 341 81.2
Aa31LG5G9820 Aethionema arabicum HOM05D005974 ORTHO05D007201 6.1e-162 574.7 419 71.1
AUR62018617 Chenopodium quinoa HOM05D005974 ORTHO05D007201 1.0e-161 573.9 339 80.5
Oeu006965.1 Olea europaea HOM05D005974 ORTHO05D007201 1.8e-161 573.2 361 77.8
Lj1g0014442 Lotus japonicus HOM05D005974 ORTHO05D007201 2.3e-161 572.8 387 73.6
Gorai.010G105000 Gossypium raimondii HOM05D005974 ORTHO05D007201 4.0e-161 572.0 362 77.1
CsaV3_3G048470 Cucumis sativus L. HOM05D005974 ORTHO05D007201 8.8e-161 570.9 402 71.1
Cpa.g.sc7.214 Carica papaya HOM05D005974 ORTHO05D007201 1.2e-160 570.5 392 73.0
Aqoxy7G01418 Aquilegia oxysepala HOM05D005974 ORTHO05D007201 1.5e-160 570.1 340 80.3
CAN.G208.66 Capsicum annuum HOM05D005974 ORTHO05D007201 2.0e-160 569.7 363 75.8
Medtr3g110360 Medicago truncatula HOM05D005974 ORTHO05D007201 2.0e-160 569.7 346 79.5
Ca_15573_v3 Cicer arietinum L. HOM05D005974 ORTHO05D007201 2.6e-160 569.3 349 78.2
Thecc.09G047600 Theobroma cacao HOM05D005974 ORTHO05D007201 5.7e-160 568.2 363 76.0
Gohir.D06G091000 Gossypium hirsutum HOM05D005974 ORTHO05D007201 7.5e-160 567.8 362 76.5
Cc08_g09880 Coffea canephora HOM05D005974 ORTHO05D007201 9.7e-160 567.4 361 76.7
CSS0034694 Camellia sinensis var. sinensis HOM05D005974 ORTHO05D007201 1.7e-159 566.6 392 72.7
SalBow1G5620 Salvia bowleyana HOM05D005974 ORTHO05D007201 2.8e-159 565.8 421 69.1
TPR.G12488 Trifolium pratense HOM05D005974 ORTHO05D007201 2.8e-159 565.8 362 75.1
Gohir.A06G091700 Gossypium hirsutum HOM05D005974 ORTHO05D007201 3.7e-159 565.5 362 76.2
GSVIVG01035293001 Vitis vinifera HOM05D005974 ORTHO05D007201 6.3e-159 564.7 362 75.7
MELO3C003472.2 Cucumis melo HOM05D005974 ORTHO05D007201 8.3e-159 564.3 412 69.7
PSO063G5342 Papaver somniferum HOM05D005974 ORTHO05D007201 1.2e-157 560.5 345 77.7
ClCG11G015070 Citrullus lanatus HOM05D005974 ORTHO05D007201 3.5e-157 558.9 354 76.3
Atru.chr7.2057 Acer truncatum HOM05D005974 ORTHO05D007201 5.9e-157 558.1 362 76.8
Rhsim02G0175300 Rhododendron simsii HOM05D005974 ORTHO05D007201 7.7e-157 557.8 387 71.1
PSO832G2350 Papaver somniferum HOM05D005974 ORTHO05D007201 1.0e-156 557.4 365 74.2
ATR0705G128 Amborella trichopoda HOM05D005974 ORTHO05D007201 3.8e-156 555.4 390 70.0
Actinidia30286 Actinidia chinensis HOM05D005974 ORTHO05D007201 7.2e-155 551.2 397 70.0
Os01g0743400 Oryza sativa ssp. japonica HOM05D005974 ORTHO05D007201 2.0e-152 543.1 348 75.6
TAR624G1429 Trochodendron aralioides HOM05D005974 ORTHO05D007201 3.4e-152 542.3 330 78.5
QL12p041028 Quercus lobata HOM05D005974 ORTHO05D007201 9.1e-150 534.3 324 80.2
Dinv27921 Davidia involucrata HOM05D005974 ORTHO05D007201 2.7e-149 532.7 404 67.8
AagrBONN_evm.TU.Sc2ySwM_344.1805 Anthoceros agrestis HOM05D005974 ORTHO05D007201 4.0e-145 518.8 348 72.1
Mapoly0137s0001 Marchantia polymorpha HOM05D005974 ORTHO05D007201 8.9e-145 517.7 348 71.0
Nitab4.5_0001737g0060 Nicotiana tabacum HOM05D005974 ORTHO05D007201 2.0e-144 516.5 366 72.1
CDE02G2857 Ceratophyllum demersum HOM05D005974 ORTHO05D007201 1.3e-143 513.8 338 74.0
Psat5g020640 Pisum sativum HOM05D005974 ORTHO05D007201 1.3e-143 513.8 306 79.7
arahy.Tifrunner.gnm1.ann1.I5HST9 Arachis hypogaea HOM05D005974 ORTHO05D007201 2.8e-143 512.7 349 73.4
Peaxi162Scf00064g01533 Petunia axillaris HOM05D005974 ORTHO05D007201 2.8e-143 512.7 357 71.7
HPP92_024453 Vanilla planifolia HOM05D005974 ORTHO05D007201 3.9e-140 502.3 369 67.5
MBI04_g20303_MAGBIO Magnolia biondii HOM05D005974 ORTHO05D007201 1.1e-139 500.7 360 71.1
Pp3c13_12220 Physcomitrium patens HOM05D005974 ORTHO05D007201 7.3e-139 498.0 339 70.2
Lj8C569G5 Lonicera japonica HOM05D000602 ORTHO05D001147 5.8e-136 488.4 404 63.9
AUR62007372 Chenopodium quinoa HOM05D005974 ORTHO05D007201 7.5e-136 488.0 361 68.1
Sed0012339 Sechium edule HOM05D005974 ORTHO05D007201 6.4e-135 485.0 286 82.5
DCAR_018521 Daucus carota HOM05D005974 ORTHO05D007201 8.3e-135 484.6 295 78.3
SMO116G0397 Selaginella moellendorffii HOM05D005974 ORTHO05D007201 9.2e-134 481.1 351 65.8
VMungo1309G1913 Vigna mungo HOM05D005974 ORTHO05D007201 1.9e-131 473.4 270 84.8
PRCOL_00006768 Prasinoderma coloniale HOM05D005974 ORTHO05D007201 4.4e-128 462.2 345 64.6
Duzib187G1338 Durio zibethinus HOM05D005974 ORTHO05D007201 1.3e-127 460.7 360 66.4
vmacro11047 Vaccinium macrocarpon HOM05D005974 ORTHO05D007201 3.0e-124 449.5 417 59.5
MCO14G391 Micromonas commoda HOM05D005974 ORTHO05D007201 5.1e-124 448.7 382 59.2
SGA_v2.0_scaffold163G38058 Striga asiatica HOM05D005974 ORTHO05D007201 8.6e-124 448.0 341 66.3
Nn7g37050 Nelumbo nucifera HOM05D005974 ORTHO05D007201 2.1e-117 426.8 390 57.7
Cre05.g238322 Chlamydomonas reinhardtii HOM05D005974 ORTHO05D007201 2.7e-117 426.4 346 57.8
BcaB06g29641 Brassica carinata HOM05D005974 ORTHO05D007201 1.8e-113 413.7 241 87.6
Prupe.1G445200 Prunus persica HOM05D005974 ORTHO05D007201 8.9e-113 411.4 248 82.3
Hund14385 Selenicereus undatus HOM05D005974 ORTHO05D007201 2.0e-112 410.2 250 78.0
Gohir.D06G090920 Gossypium hirsutum HOM05D005974 ORTHO05D007201 4.3e-91 339.3 209 77.0
Zm00001eb153590 Zea mays HOM05D005974 ORTHO05D007201 2.5e-86 323.6 210 75.7
HanXRQChr06g0174211 Helianthus annuus HOM05D005974 ORTHO05D007201 9.3e-86 321.6 200 75.5
CBR_g26161 Chara braunii HOM05D005974 ORTHO05D007201 1.3e-76 291.2 202 69.8
Haze_27433 Corylus avellana HOM05D005974 ORTHO05D007201 1.5e-67 261.2 278 50.4
Cfa024571 Carpinus fangiana HOM05D005974 ORTHO05D007201 1.1e-51 208.4 412 35.7
Haze_21915 Corylus avellana HOM05D005974 ORTHO05D007201 2.0e-43 181.0 123 76.4
Ah.07g201090 Amaranthus hybridus HOM05D005974 ORTHO05D007201 2.9e-39 167.2 242 42.1
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 1.0e-36 158.7 113 64.6
SEGI_31887 Sequoiadendron giganteum HOM05D005974 ORTHO05D007201 9.1e-33 145.6 98 66.3
SEGI_40033 Sequoiadendron giganteum HOM05D005974 ORTHO05D007201 5.9e-32 142.9 84 77.4
CDE08G1286 Ceratophyllum demersum HOM05D000581 ORTHO05D000412 3.2e-25 120.6 84 70.2
Lsat_1_v5_gn_9_95260 Lactuca sativa HOM05D005974 ORTHO05D007201 6.2e-21 106.3 161 39.1
Hund30885 Selenicereus undatus HOM05D005974 ORTHO05D007201 5.2e-20 103.2 74 63.5
Hund30611 Selenicereus undatus HOM05D005974 ORTHO05D007201 1.2e-19 102.1 74 62.2
VMungo1309G1904 Vigna mungo HOM05D005974 ORTHO05D007201 2.6e-19 100.9 101 51.5
Gohir.D06G090940 Gossypium hirsutum HOM05D005974 ORTHO05D007201 1.2e-13 82.0 44 79.5
Gohir.A05G045550 Gossypium hirsutum HOM05D005974 ORTHO05D007201 6.2e-13 79.7 74 60.8
arahy.Tifrunner.gnm1.ann1.05PEK3 Arachis hypogaea HOM05D005974 ORTHO05D038942 1.7e-10 71.6 99 38.4
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 2.2e-10 71.2 112 43.8
CBR_g26165 Chara braunii HOM05D005974 ORTHO05D007201 1.6e-08 65.1 38 81.6
arahy.Tifrunner.gnm1.ann1.8YH8YH Arachis hypogaea HOM05D005974 ORTHO05D007201 1.3e-07 62.0 93 40.9
BraA03t10850Z Brassica rapa HOM05D009421 ORTHO05D012578 1.7e-07 61.6 29 100.0
FvH4_5g31180 Fragaria vesca HOM05D000076 ORTHO05D005802 4.3e-06 57.0 34 70.6
Sp6g14840 Schrenkiella parvula HOM05D009421 ORTHO05D012578 7.3e-06 56.2 29 86.2
CARHR265660 Cardamine hirsuta HOM05D009421 ORTHO05D012578 9.5e-06 55.8 29 86.2


User provided reference genes

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