Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p15150 Brassica napus HOM05D003962 ORTHO05D004714 0.0e+00 1635.9 1066 100.0
BraA03t10810Z Brassica rapa HOM05D003962 ORTHO05D004714 0.0e+00 1613.2 1069 99.2
BolC3t14179H Brassica oleracea HOM05D003962 ORTHO05D004714 0.0e+00 1520.8 1076 87.6
BcaC01g06252 Brassica carinata HOM05D003962 ORTHO05D004714 0.0e+00 1501.9 1074 87.3
C03p17680 Brassica napus HOM05D003962 ORTHO05D004714 0.0e+00 1466.1 1082 85.6
BcaNung06205 Brassica carinata HOM05D003962 ORTHO05D004714 0.0e+00 1378.6 1085 84.8
Sp6g15570 Schrenkiella parvula HOM05D003962 ORTHO05D004714 0.0e+00 1095.9 1157 69.5
AT5G53440 Arabidopsis thaliana HOM05D003962 ORTHO05D004714 2.2e-290 1002.7 1084 66.0
AL8G28140 Arabidopsis lyrata HOM05D003962 ORTHO05D004714 7.0e-289 997.7 1184 63.3
Thhalv10012484m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 1.2e-283 980.3 1094 63.9
Carub.0008s1360 Capsella rubella HOM05D003962 ORTHO05D004714 3.2e-281 972.2 1174 62.7
CARHR266560 Cardamine hirsuta HOM05D003962 ORTHO05D004714 2.2e-250 869.8 1181 58.2
Aa31sc139G70 Aethionema arabicum HOM05D003962 ORTHO05D004714 1.3e-157 561.6 1160 48.8
THA.LOC104800296 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 4.1e-156 556.6 1098 45.6
Thhalv10026934m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 2.7e-131 474.2 645 50.2
THA.LOC104825141 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 1.8e-127 461.5 975 44.2
Cpa.g.sc3.71 Carica papaya HOM05D003962 ORTHO05D004714 1.5e-113 415.2 595 45.7
COL.COLO4_11264 Corchorus olitorius HOM05D003962 ORTHO05D004714 3.8e-101 374.0 733 40.2
Haze_00190 Corylus avellana HOM05D003962 ORTHO05D004714 1.3e-96 359.0 505 46.9
Prupe.2G311300 Prunus persica HOM05D003962 ORTHO05D004714 3.1e-95 354.4 559 43.8
Atru.chr1.164 Acer truncatum HOM05D003962 ORTHO05D004714 5.9e-94 350.1 823 36.3
Cfa016250 Carpinus fangiana HOM05D003962 ORTHO05D004714 1.3e-93 349.0 606 41.1
Thecc.03G196300 Theobroma cacao HOM05D003962 ORTHO05D004714 1.7e-93 348.6 1227 42.9
Manes.14G006600 Manihot esculenta HOM05D003962 ORTHO05D004714 5.5e-92 343.6 821 36.4
Duzib084G0525 Durio zibethinus HOM05D003962 ORTHO05D004714 3.6e-91 340.9 813 35.3
Duzib205G1416 Durio zibethinus HOM05D003962 ORTHO05D004714 7.4e-89 333.2 763 37.6
Sabra12G0018000 Salix brachista HOM05D003962 ORTHO05D004714 9.7e-89 332.8 673 37.4
CiPaw.05G251700 Carya illinoinensis HOM05D003962 ORTHO05D004714 2.4e-87 328.2 821 35.8
MD01G1219900 Malus domestica HOM05D003962 ORTHO05D004714 1.2e-86 325.9 824 35.9
Sabra15G0011900 Salix brachista HOM05D003962 ORTHO05D004714 1.5e-86 325.5 644 38.5
Duzib068G0757 Durio zibethinus HOM05D003962 ORTHO05D004714 2.2e-85 321.6 767 35.9
Potri.012G013800 Populus trichocarpa HOM05D003962 ORTHO05D004714 2.2e-85 321.6 701 38.2
QL09p009481 Quercus lobata HOM05D003962 ORTHO05D004714 2.9e-85 321.2 625 39.8
TWI23G0430 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 2.7e-83 314.7 903 42.4
Ciclev10004179m.g Citrus clementina HOM05D003962 ORTHO05D004714 6.1e-83 313.5 1003 42.5
Duzib205G1946 Durio zibethinus HOM05D003962 ORTHO05D004714 8.0e-83 313.2 1237 37.9
Potri.015G014800 Populus trichocarpa HOM05D003962 ORTHO05D004714 3.9e-82 310.8 762 36.6
FvH4_7g31740 Fragaria vesca HOM05D003962 ORTHO05D004714 7.4e-81 306.6 821 35.4
TWI39G0414 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 4.8e-80 303.9 1123 38.0
MD07G1290200 Malus domestica HOM05D003962 ORTHO05D004714 1.8e-79 302.0 815 34.4
CANSAT21G2091 Cannabis sativa HOM05D003962 ORTHO05D004714 3.1e-79 301.2 847 35.2
FAN10G2253 Fragaria x ananassa HOM05D003962 ORTHO05D004714 3.1e-79 301.2 820 35.4
FAN06G4429 Fragaria x ananassa HOM05D003962 ORTHO05D004714 7.0e-79 300.1 827 34.9
Gorai.007G015000 Gossypium raimondii HOM05D003962 ORTHO05D004714 7.0e-79 300.1 817 34.8
FAN06G4230 Fragaria x ananassa HOM05D003962 ORTHO05D004714 9.1e-79 299.7 827 34.9
CiPaw.06G010000 Carya illinoinensis HOM05D003962 ORTHO05D004714 3.5e-78 297.7 638 38.6
Gohir.A11G014500 Gossypium hirsutum HOM05D003962 ORTHO05D004714 3.5e-78 297.7 809 35.1
TWI14G0330 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 7.7e-78 296.6 1006 37.0
Gohir.D11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 1.5e-76 292.4 810 34.0
Gohir.A11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 2.5e-76 291.6 800 34.8
FAN10G3613 Fragaria x ananassa HOM05D003962 ORTHO05D004714 3.2e-76 291.2 827 34.5
Gohir.D11G014700 Gossypium hirsutum HOM05D003962 ORTHO05D004714 4.2e-76 290.8 730 35.3
Gorai.007G015100 Gossypium raimondii HOM05D003962 ORTHO05D004714 2.1e-75 288.5 502 40.6
RcHm_v2.0_Chr1g0380961 Rosa chinensis HOM05D003962 ORTHO05D004714 4.7e-75 287.3 718 36.2
GSVIVG01038709001 Vitis vinifera HOM05D003962 ORTHO05D004714 4.7e-75 287.3 558 40.1
FAN01G0781 Fragaria x ananassa HOM05D003962 ORTHO05D004714 6.1e-75 287.0 820 34.8
Ca_16697_v3 Cicer arietinum L. HOM05D003962 ORTHO05D004714 2.3e-74 285.0 1053 33.7
FAN03G1461 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.5e-73 282.3 827 34.6
Eucgr.A01465 Eucalyptus grandis HOM05D003962 ORTHO05D004714 1.7e-72 278.9 638 35.4
MELO3C005882.2 Cucumis melo HOM05D003962 ORTHO05D004714 1.1e-71 276.2 490 40.2
ClCG01G000470 Citrullus lanatus HOM05D003962 ORTHO05D004714 1.2e-70 272.7 483 40.8
CsaV3_5G000540 Cucumis sativus L. HOM05D003962 ORTHO05D004714 2.0e-70 271.9 491 39.9
Glyma.06G127600 Glycine max HOM05D003962 ORTHO05D004714 1.5e-68 265.8 960 36.7
Sed0023111 Sechium edule HOM05D003962 ORTHO05D004714 1.5e-68 265.8 478 40.2
Manes.06G159800 Manihot esculenta HOM05D003962 ORTHO05D004714 3.2e-68 264.6 722 33.5
Phvul.009G053600 Phaseolus vulgaris HOM05D003962 ORTHO05D004714 9.4e-68 263.1 807 32.6
Glyma.04G236700 Glycine max HOM05D003962 ORTHO05D004714 1.6e-67 262.3 1116 36.6
PGR042G1008 Punica granatum HOM05D003962 ORTHO05D004714 2.1e-67 261.9 688 33.9
TAR374G0911 Trochodendron aralioides HOM05D003962 ORTHO05D004714 2.7e-67 261.5 600 34.8
TAR629G3347 Trochodendron aralioides HOM05D003962 ORTHO05D004714 5.2e-66 257.3 604 36.1
Lj1g0008504 Lotus japonicus HOM05D003962 ORTHO05D004714 2.2e-64 251.9 1078 38.0
TAR636G0021 Trochodendron aralioides HOM05D003962 ORTHO05D004714 8.3e-64 250.0 528 38.3
arahy.Tifrunner.gnm1.ann1.897SEY Arachis hypogaea HOM05D003962 ORTHO05D004714 5.4e-63 247.3 818 31.2
TAR375G1139 Trochodendron aralioides HOM05D003962 ORTHO05D004714 7.0e-63 246.9 502 38.6
VMungo1309G1284 Vigna mungo HOM05D003962 ORTHO05D004714 2.0e-62 245.4 1254 31.8
C06p30100 Brassica napus HOM05D003962 ORTHO05D032564 8.6e-61 240.0 150 88.7
BolC6t38171H Brassica oleracea HOM05D003962 ORTHO05D032564 8.6e-61 240.0 150 88.7
Medtr3g091280 Medicago truncatula HOM05D003962 ORTHO05D004714 1.1e-60 239.6 1068 36.8
Lalb_Chr11g0066791 Lupinus albus HOM05D003962 ORTHO05D004714 1.9e-60 238.8 716 33.2
Dinv37529 Davidia involucrata HOM05D003962 ORTHO05D004714 5.5e-60 237.3 704 32.8
TPR.G17287 Trifolium pratense HOM05D003962 ORTHO05D004714 7.2e-60 236.9 537 36.3
Nn3g19007 Nelumbo nucifera HOM05D003962 ORTHO05D004714 9.5e-60 236.5 714 32.9
MBI07_g07101_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 1.6e-59 235.7 611 35.2
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 1.6e-59 235.7 650 33.7
Psat5g078120 Pisum sativum HOM05D003962 ORTHO05D004714 2.8e-59 235.0 1022 37.1
arahy.Tifrunner.gnm1.ann1.JYM9I0 Arachis hypogaea HOM05D003962 ORTHO05D004714 1.8e-58 232.3 1091 33.0
Sed0017272 Sechium edule HOM05D003962 ORTHO05D004714 4.0e-58 231.1 686 33.2
Cc08_g16110 Coffea canephora HOM05D003962 ORTHO05D004714 2.0e-57 228.8 707 33.7
Lalb_Chr23g0271551 Lupinus albus HOM05D003962 ORTHO05D004714 2.0e-57 228.8 804 31.0
CSS0016674 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 2.6e-57 228.4 700 32.1
CSS0043367 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 2.6e-57 228.4 700 32.1
Nn1g01866 Nelumbo nucifera HOM05D003962 ORTHO05D004714 1.7e-56 225.7 821 30.7
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 2.2e-56 225.3 747 32.4
Lj2A167T45 Lonicera japonica HOM05D003962 ORTHO05D004714 1.2e-54 219.5 645 32.7
SalBow1G2835 Salvia bowleyana HOM05D003962 ORTHO05D004714 3.9e-53 214.5 683 31.6
SalBow1G4038 Salvia bowleyana HOM05D003962 ORTHO05D004714 3.9e-53 214.5 683 31.6
vmacro11467 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 8.6e-53 213.4 663 32.6
Aqoxy7G00097 Aquilegia oxysepala HOM05D003962 ORTHO05D004714 1.5e-52 212.6 569 34.3
AUR62019379 Chenopodium quinoa HOM05D003962 ORTHO05D004714 2.5e-52 211.8 704 33.7
CAN.G1804.9 Capsicum annuum HOM05D003962 ORTHO05D004714 3.3e-52 211.5 692 32.9
EL10Ac3g05299 Beta vulgaris HOM05D003962 ORTHO05D004714 4.3e-52 211.1 788 31.2
Migut.A00639 Erythranthe guttata HOM05D003962 ORTHO05D004714 5.6e-52 210.7 656 32.2
Peaxi162Scf00074g00821 Petunia axillaris HOM05D003962 ORTHO05D004714 5.6e-52 210.7 675 33.0
AUR62006109 Chenopodium quinoa HOM05D003962 ORTHO05D004714 7.3e-52 210.3 783 32.1
Hma1.2p1_0359F.1_g135210 Hydrangea macrophylla HOM05D003962 ORTHO05D004714 2.1e-51 208.8 664 31.3
Solyc08g082410.4 Solanum lycopersicum HOM05D003962 ORTHO05D004714 3.6e-51 208.0 526 33.5
PGSC0003DMG400012278 Solanum tuberosum HOM05D003962 ORTHO05D004714 8.0e-51 206.8 555 32.6
Lalb_Chr08g0240331 Lupinus albus HOM05D003962 ORTHO05D004714 2.3e-50 205.3 1182 35.1
Actinidia04199 Actinidia chinensis HOM05D003962 ORTHO05D004714 1.5e-49 202.6 661 30.6
Actinidia27315 Actinidia chinensis HOM05D003962 ORTHO05D004714 4.9e-48 197.6 657 32.0
PSO170G0250 Papaver somniferum HOM05D003962 ORTHO05D004714 4.9e-48 197.6 499 34.3
MBI06_g08468_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 3.2e-47 194.9 711 31.4
Nitab4.5_0007367g0070 Nicotiana tabacum HOM05D003962 ORTHO05D004714 4.1e-47 194.5 496 32.5
PSO063G5170 Papaver somniferum HOM05D003962 ORTHO05D004714 4.1e-47 194.5 491 34.4
CSS0006905 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 5.4e-47 194.1 656 32.5
Ah.07g205820 Amaranthus hybridus HOM05D003962 ORTHO05D004714 7.0e-47 193.7 574 34.1
PSO135G0074 Papaver somniferum HOM05D003962 ORTHO05D004714 9.2e-47 193.4 573 33.5
Actinidia22731 Actinidia chinensis HOM05D003962 ORTHO05D004714 2.7e-46 191.8 689 31.9
DCAR_029893 Daucus carota HOM05D003962 ORTHO05D004714 2.7e-46 191.8 803 29.3
Ah.13g070110 Amaranthus hybridus HOM05D003962 ORTHO05D004714 3.5e-46 191.4 769 32.0
Rhsim02G0244100 Rhododendron simsii HOM05D003962 ORTHO05D004714 6.0e-46 190.7 668 33.1
PSO384G0521 Papaver somniferum HOM05D003962 ORTHO05D004714 7.8e-46 190.3 542 33.4
Rhsim02G0244200 Rhododendron simsii HOM05D003962 ORTHO05D004714 1.7e-45 189.1 455 35.8
MSTRG.25678 Avicennia marina HOM05D003962 ORTHO05D004714 2.3e-45 188.7 667 32.5
Nitab4.5_0002944g0030 Nicotiana tabacum HOM05D003962 ORTHO05D004714 3.9e-45 188.0 653 29.2
SHI02385 Sapria himalayana HOM05D003962 ORTHO05D004714 6.6e-45 187.2 468 35.3
Sc19g0000840 Simmondsia chinensis HOM05D003962 ORTHO05D004714 3.6e-43 181.4 660 32.1
vmacro11361 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 8.0e-43 180.3 638 31.7
MSTRG.13886 Avicennia marina HOM05D003962 ORTHO05D004714 1.8e-42 179.1 636 30.5
Oeu063516.1 Olea europaea HOM05D003962 ORTHO05D004714 8.9e-42 176.8 687 30.4
BcaC08g45378 Brassica carinata HOM05D003962 ORTHO05D032564 3.7e-40 171.4 100 91.0
HanXRQChr06g0166431 Helianthus annuus HOM05D003962 ORTHO05D004714 1.7e-37 162.5 578 30.1
ECA246G1296 Erigeron canadensis HOM05D003962 ORTHO05D004714 3.3e-36 158.3 739 28.8
Oeu054025.1 Olea europaea HOM05D003962 ORTHO05D004714 3.3e-36 158.3 701 29.0
Oeu009961.1 Olea europaea HOM05D003962 ORTHO05D004714 2.1e-35 155.6 798 29.2
Sc25g0000880 Simmondsia chinensis HOM05D003962 ORTHO05D004714 2.1e-35 155.6 537 30.5
ATR0602G039 Amborella trichopoda HOM05D003962 ORTHO05D004714 3.6e-35 154.8 484 31.6
SGA_v2.0_scaffold305G47981 Striga asiatica HOM05D003962 ORTHO05D004714 1.8e-34 152.5 783 27.5
Oeu058004.1 Olea europaea HOM05D003962 ORTHO05D004714 4.0e-34 151.4 316 36.4
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 2.4e-31 142.1 722 26.3
Os01g0655400 Oryza sativa ssp. japonica HOM05D003962 ORTHO05D004714 4.6e-30 137.9 443 31.4
Nitab4.5_0001210g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 6.2e-27 127.5 462 30.3
DCAR_006489 Daucus carota HOM05D003962 ORTHO05D004714 2.4e-26 125.6 695 27.5
HanXRQChr17g0534811 Helianthus annuus HOM05D003962 ORTHO05D004714 1.2e-25 123.2 665 29.3
HPP92_024026 Vanilla planifolia HOM05D003962 ORTHO05D004714 1.2e-25 123.2 574 26.1
Zm00001eb359440 Zea mays HOM05D003962 ORTHO05D004714 4.4e-25 121.3 714 27.2
A03p24330 Brassica napus HOM05D003962 ORTHO05D004714 2.2e-24 119.0 74 86.5
Nitab4.5_0006775g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 8.4e-24 117.1 681 28.5
CDE10G1062 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.2e-22 113.2 619 25.8
Zm00001eb158050 Zea mays HOM05D003962 ORTHO05D004714 1.5e-20 106.3 736 27.2
CDE10G0926 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 3.3e-20 105.1 619 27.0
unitig_0.g2842 Utricularia gibba HOM05D003962 ORTHO05D004714 2.8e-19 102.1 164 37.8
unitig_88.g27642 Utricularia gibba HOM05D003962 ORTHO05D004714 5.8e-17 94.4 301 30.9
Lsat_1_v5_gn_3_10880 Lactuca sativa HOM05D003962 ORTHO05D004714 2.9e-16 92.0 587 25.7
Prupe.5G120600 Prunus persica HOM05D003962 ORTHO05D004714 3.8e-16 91.7 527 26.4
CDE09G1087 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 2.3e-13 82.4 643 26.7
SEGI_14221 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 1.6e-11 76.3 431 27.6
SEGI_41344 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 2.1e-11 75.9 305 26.9
CDE02G1812 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 6.2e-11 74.3 523 26.4
ECA233G2741 Erigeron canadensis HOM05D003962 ORTHO05D004714 7.6e-09 67.4 518 24.9
BcaB03g16273 Brassica carinata HOM05D000238 ORTHO05D011431 1.2e-06 60.1 42 76.2
A07p27300 Brassica napus HOM05D003962 ORTHO05D004714 6.0e-06 57.8 30 90.0


User provided reference genes

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