Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p15040 Brassica napus HOM05D003640 ORTHO05D004439 0.0e+00 1087.4 612 100.0
BraA03t10798Z Brassica rapa HOM05D003640 ORTHO05D004439 6.0e-309 1063.5 627 97.1
C03p17530 Brassica napus HOM05D003640 ORTHO05D004439 1.7e-308 1062.0 613 96.1
BolC3t14166H Brassica oleracea HOM05D003640 ORTHO05D004439 7.1e-302 1040.0 630 93.2
BcaB01g04251 Brassica carinata HOM05D003640 ORTHO05D004439 5.3e-281 970.7 616 91.2
Thhalv10012857m.g Eutrema salsugineum HOM05D003640 ORTHO05D004439 4.8e-234 814.7 681 72.5
Sp6g15760 Schrenkiella parvula HOM05D003640 ORTHO05D004439 6.3e-234 814.3 640 77.3
Sp6g15750 Schrenkiella parvula HOM05D003640 ORTHO05D004439 2.0e-224 782.7 633 72.2
BcaB05g22060 Brassica carinata HOM05D003640 ORTHO05D004439 1.5e-222 776.5 601 79.0
Carub.0008s1397 Capsella rubella HOM05D003640 ORTHO05D004439 1.3e-210 736.9 690 64.6
CARHR266770 Cardamine hirsuta HOM05D003640 ORTHO05D004439 1.6e-208 729.9 682 66.0
CARHR266800 Cardamine hirsuta HOM05D003640 ORTHO05D004439 2.3e-204 716.1 691 63.4
AL8G28460 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 8.1e-197 691.0 687 63.5
AT5G53620 Arabidopsis thaliana HOM05D003640 ORTHO05D004439 9.8e-195 684.1 696 62.8
BcaB01g04247 Brassica carinata HOM05D003640 ORTHO05D004439 1.5e-187 660.2 556 75.5
Carub.0008s1383 Capsella rubella HOM05D003640 ORTHO05D004439 6.9e-180 634.8 666 61.1
BcaC01g06262 Brassica carinata HOM05D003640 ORTHO05D004439 1.4e-177 627.1 615 65.4
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 3.0e-159 566.2 704 54.0
Aa31sc289G20 Aethionema arabicum HOM05D003640 ORTHO05D004439 9.7e-150 534.6 653 53.3
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 1.1e-124 451.4 744 44.1
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 4.1e-124 449.5 729 46.6
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 9.1e-124 448.4 731 46.5
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 3.8e-122 443.0 730 42.9
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 8.5e-122 441.8 726 46.1
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 1.1e-121 441.4 739 44.0
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 4.2e-121 439.5 743 44.4
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 4.2e-121 439.5 730 45.3
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 5.5e-121 439.1 747 43.6
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 1.2e-120 438.0 744 43.4
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 2.7e-120 436.8 736 42.5
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 8.0e-120 435.3 730 42.7
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 1.0e-119 434.9 730 43.6
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 3.0e-119 433.3 741 44.1
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 3.0e-119 433.3 748 43.3
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 5.7e-118 429.1 675 45.8
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 7.5e-118 428.7 741 42.6
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 9.7e-118 428.3 737 42.3
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 9.7e-118 428.3 739 45.6
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.7e-117 427.6 740 44.3
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 1.7e-117 427.6 741 42.0
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 6.3e-117 425.6 744 45.3
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 6.3e-117 425.6 738 45.8
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.4e-116 424.5 748 45.2
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 3.1e-116 423.3 738 42.4
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 5.3e-116 422.5 709 44.4
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 2.0e-115 420.6 735 43.8
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 3.5e-115 419.9 711 44.4
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 7.7e-115 418.7 743 44.7
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 1.3e-114 417.9 592 48.0
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 8.5e-114 415.2 743 40.5
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 1.5e-113 414.5 742 40.2
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 9.4e-113 411.8 735 43.1
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 9.4e-113 411.8 741 41.0
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 2.7e-112 410.2 731 42.7
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 2.7e-112 410.2 731 42.0
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 2.3e-111 407.1 682 41.6
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 4.0e-111 406.4 748 40.8
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 5.2e-111 406.0 743 40.5
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 6.8e-111 405.6 729 40.1
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 1.2e-110 404.8 597 47.2
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 2.0e-110 404.1 731 41.5
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 2.6e-110 403.7 727 43.7
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 3.4e-110 403.3 741 40.9
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 4.4e-110 402.9 736 41.7
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 6.3e-109 399.1 736 43.6
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 6.3e-109 399.1 728 42.0
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 1.1e-108 398.3 734 43.6
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 5.4e-108 396.0 742 43.5
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 9.1e-108 395.2 738 40.1
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 9.1e-108 395.2 781 38.8
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.6e-107 394.4 736 43.9
MSTRG.26989 Avicennia marina HOM05D003640 ORTHO05D004439 7.7e-107 392.1 713 43.6
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 1.0e-106 391.7 739 40.9
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 2.3e-106 390.6 590 45.9
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 5.0e-106 389.4 687 42.9
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 5.0e-106 389.4 732 40.4
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 6.5e-106 389.0 735 40.0
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 8.6e-106 388.7 739 40.2
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 1.1e-105 388.3 637 44.9
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 1.1e-105 388.3 740 39.9
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 1.9e-105 387.5 741 41.3
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 3.2e-105 386.7 721 42.6
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 2.1e-104 384.0 742 39.8
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 1.4e-103 381.3 692 42.3
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 2.3e-103 380.6 737 43.4
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 3.4e-102 376.7 705 41.7
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 7.5e-102 375.6 710 41.3
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 9.8e-102 375.2 696 40.9
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 1.3e-101 374.8 723 38.9
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 6.3e-101 372.5 706 40.2
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 8.3e-101 372.1 676 40.7
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 3.1e-100 370.2 728 40.9
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 3.1e-100 370.2 705 39.9
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 2.0e-99 367.5 730 38.4
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 4.5e-99 366.3 706 39.7
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 4.5e-99 366.3 723 39.8
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 4.5e-99 366.3 733 39.7
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 5.9e-99 365.9 704 39.3
A03p14940 Brassica napus HOM05D003640 ORTHO05D004439 2.3e-98 364.0 383 59.0
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 2.9e-98 363.6 673 41.5
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 1.1e-97 361.7 716 41.3
BraA03t10789Z Brassica rapa HOM05D003640 ORTHO05D004439 1.9e-97 360.9 383 58.7
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 1.9e-97 360.9 748 36.8
Cpa.g.sc3.144 Carica papaya HOM05D003640 ORTHO05D004439 2.8e-96 357.1 549 45.5
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 6.1e-96 355.9 659 41.4
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 8.0e-96 355.5 726 40.8
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 1.4e-95 354.8 739 41.1
Sc19g0000670 Simmondsia chinensis HOM05D003640 ORTHO05D004439 4.0e-95 353.2 578 43.3
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 3.4e-94 350.1 763 38.5
Lsat_1_v5_gn_9_50221 Lactuca sativa HOM05D003640 ORTHO05D004439 7.5e-94 349.0 650 42.8
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 1.7e-93 347.8 719 38.5
Lsat_1_v5_gn_9_50181 Lactuca sativa HOM05D003640 ORTHO05D004439 2.9e-93 347.1 656 41.5
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 3.7e-93 346.7 736 41.4
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 4.9e-93 346.3 758 37.6
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 6.4e-93 345.9 735 39.3
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 6.4e-93 345.9 738 41.6
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 8.3e-93 345.5 734 41.1
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 1.4e-92 344.7 759 38.6
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 2.7e-91 340.5 618 40.8
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 6.0e-91 339.3 750 37.5
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 1.0e-90 338.6 723 38.7
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 3.3e-89 333.6 640 40.0
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 4.3e-89 333.2 727 39.3
Aqoxy7G00014 Aquilegia oxysepala HOM05D003640 ORTHO05D004439 3.6e-88 330.1 751 36.6
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 6.2e-88 329.3 757 36.5
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 8.9e-87 325.5 704 40.1
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 1.5e-86 324.7 750 36.0
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 7.5e-86 322.4 724 37.2
Sopen03g022220 Solanum pennellii HOM05D003640 ORTHO05D004439 5.4e-84 316.2 589 40.6
Zm00001eb037420 Zea mays HOM05D003640 ORTHO05D004439 1.7e-82 311.2 721 35.1
Os08g0543600 Oryza sativa ssp. japonica HOM05D003640 ORTHO05D004439 6.6e-82 309.3 744 35.3
Zm00001eb198460 Zea mays HOM05D003640 ORTHO05D004439 4.7e-80 303.1 730 34.9
C02p18030 Brassica napus HOM05D003640 ORTHO05D004439 1.4e-79 301.6 357 56.9
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 2.6e-78 297.4 758 36.4
BolC2t07935H Brassica oleracea HOM05D003640 ORTHO05D004439 1.1e-76 292.0 291 63.9
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 7.8e-75 285.8 727 37.0
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 6.6e-74 282.7 673 37.9
PSO063G3729 Papaver somniferum HOM05D003640 ORTHO05D004439 6.6e-74 282.7 675 35.4
CDE04G2417 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 6.8e-71 272.7 690 32.6
C09p43570 Brassica napus HOM05D003640 ORTHO05D004439 1.7e-58 231.5 226 62.8
QL09p007399 Quercus lobata HOM05D003640 ORTHO05D004439 1.4e-52 211.8 281 48.8
QL93p0214_0021 Quercus lobata HOM05D003640 ORTHO05D004439 1.4e-52 211.8 281 48.8
AL8G28750 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 3.2e-52 210.7 162 72.2
Pp3c14_13150 Physcomitrium patens HOM05D003640 ORTHO05D004439 5.4e-52 209.9 753 30.7
SHI02298 Sapria himalayana HOM05D003640 ORTHO05D004439 1.3e-48 198.7 258 55.4
Mapoly0021s0043 Marchantia polymorpha HOM05D003640 ORTHO05D004439 1.1e-47 195.7 832 29.4
RcHm_v2.0_Chr1g0382561 Rosa chinensis HOM05D003640 ORTHO05D004439 1.3e-45 188.7 372 39.8
BcaC03g14392 Brassica carinata HOM05D003640 ORTHO05D004439 1.5e-41 175.3 139 71.2
Pp3c17_17470 Physcomitrium patens HOM05D003640 ORTHO05D004439 8.2e-40 169.5 730 27.5
RcHm_v2.0_Chr1g0382611 Rosa chinensis HOM05D003640 ORTHO05D004439 1.0e-37 162.5 163 58.9
SEGI_36158 Sequoiadendron giganteum HOM05D003640 ORTHO05D004439 6.5e-37 159.8 257 46.3
CDE07G0792 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 6.0e-35 153.3 445 33.0
C09p43560 Brassica napus HOM05D003640 ORTHO05D004439 1.2e-30 139.0 104 76.9
BolC9t57239H Brassica oleracea HOM05D003640 ORTHO05D004439 1.5e-30 138.7 104 76.9
RcHm_v2.0_Chr1g0382631 Rosa chinensis HOM05D003640 ORTHO05D004439 1.7e-29 135.2 372 34.1
RcHm_v2.0_Chr1g0382641 Rosa chinensis HOM05D003640 ORTHO05D004439 7.2e-28 129.8 107 66.4
unitig_37.g11993 Utricularia gibba HOM05D003640 ORTHO05D004439 3.9e-26 124.0 640 27.7
BolC9t57241H Brassica oleracea HOM05D003640 ORTHO05D004439 4.3e-25 120.6 209 43.5
CDE04G2700 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 8.5e-21 106.3 127 49.6
arahy.Tifrunner.gnm1.ann1.3V8RAA Arachis hypogaea HOM05D003640 ORTHO05D004439 2.5e-12 78.2 389 27.0
Dinv06471 Davidia involucrata HOM05D003640 ORTHO05D004439 2.5e-12 78.2 68 69.1
Potri.016G069900 Populus trichocarpa HOM05D003640 ORTHO05D034990 5.5e-12 77.0 52 73.1
HanXRQChr11g0343691 Helianthus annuus HOM05D000954 ORTHO05D016146 8.8e-10 69.7 34 97.1
arahy.Tifrunner.gnm1.ann1.JKFZ9B Arachis hypogaea HOM05D003640 ORTHO05D082470 2.6e-09 68.2 74 52.7
PSO782G5739 Papaver somniferum HOM05D003640 ORTHO05D004439 3.3e-09 67.8 123 38.2
HanXRQChr09g0246151 Helianthus annuus HOM05D003640 ORTHO05D016146 7.4e-09 66.6 47 74.5
HanXRQChr03g0061701 Helianthus annuus HOM05D003640 ORTHO05D004439 3.7e-08 64.3 149 34.9


User provided reference genes

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