Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p14060 Brassica napus HOM05D008197 ORTHO05D001295 9.8e-52 206.5 100 100.0
BraA03t10706Z Brassica rapa HOM05D008197 ORTHO05D001295 9.8e-52 206.5 100 100.0
BolC3t14069H Brassica oleracea HOM05D008197 ORTHO05D001295 3.7e-51 204.5 100 99.0
BcaB08g37463 Brassica carinata HOM05D008197 ORTHO05D001295 1.9e-50 202.2 100 97.0
BcaC07g41669 Brassica carinata HOM05D008197 ORTHO05D001295 1.9e-50 202.2 100 97.0
BcaC01g06365 Brassica carinata HOM05D008197 ORTHO05D001295 5.4e-50 200.7 100 97.0
C08p46840 Brassica napus HOM05D008197 ORTHO05D001295 9.2e-50 199.9 100 96.0
C03p16500 Brassica napus HOM05D008197 ORTHO05D001295 2.1e-49 198.7 100 97.0
BcaB01g04341 Brassica carinata HOM05D008197 ORTHO05D001295 2.7e-41 171.8 99 85.9
Sp6g17340 Schrenkiella parvula HOM05D008197 ORTHO05D001295 5.8e-36 154.1 97 72.2
C02p16140 Brassica napus HOM05D008197 ORTHO05D001295 8.4e-35 150.2 101 69.3
BolC2t07719H Brassica oleracea HOM05D008197 ORTHO05D001295 8.4e-35 150.2 101 69.3
A02p09670 Brassica napus HOM05D008197 ORTHO05D001295 1.1e-34 149.8 101 69.3
A02p09660 Brassica napus HOM05D008197 ORTHO05D001295 5.4e-34 147.5 101 68.3
BraA02t06030Z Brassica rapa HOM05D008197 ORTHO05D001295 5.4e-34 147.5 101 68.3
C02p16090 Brassica napus HOM05D008197 ORTHO05D001295 1.6e-33 146.0 101 67.3
BolC2t07718H Brassica oleracea HOM05D008197 ORTHO05D001295 1.6e-33 146.0 101 67.3
BraA02t06031Z Brassica rapa HOM05D008197 ORTHO05D001295 1.6e-33 146.0 99 69.7
BcaB08g35900 Brassica carinata HOM05D008197 ORTHO05D001295 4.6e-33 144.4 103 70.9
BcaC04g20232 Brassica carinata HOM05D008197 ORTHO05D001295 5.1e-32 141.0 102 67.6
BcaC04g20245 Brassica carinata HOM05D008197 ORTHO05D001295 5.1e-32 141.0 103 67.0
C09p46080 Brassica napus HOM05D008197 ORTHO05D001295 5.1e-32 141.0 102 67.6
BolC9t57463H Brassica oleracea HOM05D008197 ORTHO05D001295 5.1e-32 141.0 103 67.0
BolC9t57477H Brassica oleracea HOM05D008197 ORTHO05D001295 5.1e-32 141.0 102 67.6
A10p12660 Brassica napus HOM05D008197 ORTHO05D001295 6.6e-32 140.6 103 68.0
BraA10t43356Z Brassica rapa HOM05D008197 ORTHO05D001295 6.6e-32 140.6 103 68.0
BcaB05g22208 Brassica carinata HOM05D008197 ORTHO05D001295 8.7e-32 140.2 101 65.3
C09p45960 Brassica napus HOM05D008197 ORTHO05D001295 1.5e-31 139.4 103 66.0
AL8G30990 Arabidopsis lyrata HOM05D008197 ORTHO05D001295 1.3e-30 136.3 103 61.2
A10p12710 Brassica napus HOM05D008197 ORTHO05D001295 1.3e-30 136.3 103 65.0
BraA10t43352Z Brassica rapa HOM05D008197 ORTHO05D001295 1.3e-30 136.3 103 65.0
BcaC04g20244 Brassica carinata HOM05D008197 ORTHO05D001295 1.6e-30 136.0 103 64.1
C09p45970 Brassica napus HOM05D008197 ORTHO05D001295 1.6e-30 136.0 103 64.1
BolC9t57464H Brassica oleracea HOM05D008197 ORTHO05D001295 1.6e-30 136.0 103 64.1
AT5G55450 Arabidopsis thaliana HOM05D008197 ORTHO05D001295 2.8e-30 135.2 103 63.1
AL8G30970 Arabidopsis lyrata HOM05D008197 ORTHO05D001295 1.2e-28 129.8 104 62.5
Carub.0008s1579 Capsella rubella HOM05D008197 ORTHO05D001295 3.4e-28 128.3 103 61.2
CARHR268760 Cardamine hirsuta HOM05D008197 ORTHO05D001295 2.4e-26 122.1 100 61.0
Carub.0008s1578 Capsella rubella HOM05D008197 ORTHO05D001295 4.2e-26 121.3 98 61.2
Thhalv10015086m.g Eutrema salsugineum HOM05D008197 ORTHO05D001295 5.4e-26 120.9 103 55.3
Thhalv10026641m.g Eutrema salsugineum HOM05D008197 ORTHO05D001295 7.8e-25 117.1 103 58.3
Carub.0008s1575 Capsella rubella HOM05D008197 ORTHO05D001295 2.5e-23 112.1 98 58.2
Thhalv10015912m.g Eutrema salsugineum HOM05D008197 ORTHO05D001295 4.3e-23 111.3 105 55.2
CARHR268770 Cardamine hirsuta HOM05D008197 ORTHO05D001295 5.6e-23 110.9 103 55.3
AL8G30960 Arabidopsis lyrata HOM05D008197 ORTHO05D001295 9.6e-23 110.2 98 56.1
Sp6g17330 Schrenkiella parvula HOM05D008197 ORTHO05D001295 9.6e-23 110.2 105 53.3
CARHR268750 Cardamine hirsuta HOM05D008197 ORTHO05D001295 3.6e-22 108.2 95 54.7
BcaB01g04342 Brassica carinata HOM05D008197 ORTHO05D001295 8.1e-22 107.1 98 54.1
A02p09680 Brassica napus HOM05D008197 ORTHO05D001295 1.1e-21 106.7 105 53.3
C03p16510 Brassica napus HOM05D008197 ORTHO05D001295 2.4e-21 105.5 98 53.1
BolC3t14070H Brassica oleracea HOM05D008197 ORTHO05D001295 2.4e-21 105.5 98 53.1
A03p14070 Brassica napus HOM05D008197 ORTHO05D001295 9.0e-21 103.6 98 52.0
C02p16150 Brassica napus HOM05D008197 ORTHO05D001295 9.0e-21 103.6 103 53.4
BolC2t07720H Brassica oleracea HOM05D008197 ORTHO05D001295 9.0e-21 103.6 103 53.4
BraA03t10707Z Brassica rapa HOM05D008197 ORTHO05D001295 9.0e-21 103.6 98 52.0
BraA02t06032Z Brassica rapa HOM05D008197 ORTHO05D001295 1.5e-20 102.8 105 53.3
AT5G55410 Arabidopsis thaliana HOM05D008197 ORTHO05D001295 1.7e-19 99.4 98 53.1
Aa31LG3G11410 Aethionema arabicum HOM05D008197 ORTHO05D001295 2.9e-19 98.6 95 49.5
THA.LOC104817694 Tarenaya hassleriana HOM05D008197 ORTHO05D001295 8.4e-19 97.1 93 53.8
Thhalv10015898m.g Eutrema salsugineum HOM05D008197 ORTHO05D001295 1.2e-17 93.2 105 44.8
BcaC07g41668 Brassica carinata HOM05D008197 ORTHO05D001295 6.0e-17 90.9 75 54.7
BraA10t43357Z Brassica rapa HOM05D008197 ORTHO05D001295 3.9e-16 88.2 103 42.7
Carub.0008s1580 Capsella rubella HOM05D008197 ORTHO05D001295 1.1e-13 80.1 84 42.9
Nn1g07396 Nelumbo nucifera HOM05D001848 ORTHO05D001295 2.4e-13 79.0 97 39.2
AT5G55460 Arabidopsis thaliana HOM05D008197 ORTHO05D001295 3.1e-13 78.6 104 38.5
Glyma.07G141500 Glycine max HOM05D001848 ORTHO05D001295 4.9e-11 71.2 88 40.9
Lalb_Chr00c48g0412851 Lupinus albus HOM05D001848 ORTHO05D001295 6.5e-11 70.9 89 40.4
Lalb_Chr00c48g0413061 Lupinus albus HOM05D001848 ORTHO05D001295 6.5e-11 70.9 89 40.4
Lalb_Chr04g0248081 Lupinus albus HOM05D001848 ORTHO05D001295 6.5e-11 70.9 89 40.4
Glyma.10G297600 Glycine max HOM05D001848 ORTHO05D001295 1.4e-10 69.7 92 40.2
Glyma.18G191800 Glycine max HOM05D001848 ORTHO05D001295 3.2e-10 68.6 96 37.5
arahy.Tifrunner.gnm1.ann1.04HYJ8 Arachis hypogaea HOM05D001848 ORTHO05D001295 5.5e-10 67.8 90 36.7
TPR.G30652 Trifolium pratense HOM05D001848 ORTHO05D001295 5.5e-10 67.8 70 47.1
AT5G48485 Arabidopsis thaliana HOM05D001848 ORTHO05D001295 7.1e-10 67.4 102 30.4
Glyma.07G141300 Glycine max HOM05D001848 ORTHO05D001295 7.1e-10 67.4 96 37.5
A10p12640 Brassica napus HOM05D008197 ORTHO05D001295 9.3e-10 67.0 71 45.1
Gohir.A01G085500 Gossypium hirsutum HOM05D001848 ORTHO05D001295 9.3e-10 67.0 92 40.2
Sp2g18860 Schrenkiella parvula HOM05D001848 ORTHO05D001295 9.3e-10 67.0 94 37.2
TPR.G23577 Trifolium pratense HOM05D001848 ORTHO05D001295 9.3e-10 67.0 100 35.0
CiPaw.11G196700 Carya illinoinensis HOM05D001848 ORTHO05D001295 1.2e-09 66.6 96 37.5
TAR627G0109 Trochodendron aralioides HOM05D001848 ORTHO05D001295 1.2e-09 66.6 94 35.1
TAR627G0750 Trochodendron aralioides HOM05D001848 ORTHO05D001295 1.2e-09 66.6 94 35.1
Cpa.g.sc12.222 Carica papaya HOM05D001848 ORTHO05D001295 1.6e-09 66.2 89 38.2
Gohir.D01G071850 Gossypium hirsutum HOM05D001848 ORTHO05D001295 2.1e-09 65.9 94 39.4
Gorai.002G094700 Gossypium raimondii HOM05D001848 ORTHO05D001295 2.1e-09 65.9 94 39.4
Phvul.008G112900 Phaseolus vulgaris HOM05D001848 ORTHO05D001295 2.1e-09 65.9 75 42.7
Sc17g0001760 Simmondsia chinensis HOM05D001848 ORTHO05D001295 2.1e-09 65.9 87 37.9
Medtr3g055250 Medicago truncatula HOM05D001848 ORTHO05D001295 2.7e-09 65.5 88 38.6
Prupe.4G228100 Prunus persica HOM05D001848 ORTHO05D001295 2.7e-09 65.5 85 38.8
Solyc07g065110.1 Solanum lycopersicum HOM05D001848 ORTHO05D001295 2.7e-09 65.5 101 37.6
Sopen07g033320 Solanum pennellii HOM05D001848 ORTHO05D001295 2.7e-09 65.5 91 38.5
Glyma.12G045500 Glycine max HOM05D001848 ORTHO05D001295 3.5e-09 65.1 90 36.7
LjContig00272g0007655 Lotus japonicus HOM05D001848 ORTHO05D001295 3.5e-09 65.1 74 39.2
QL09p046203 Quercus lobata HOM05D001848 ORTHO05D001295 4.6e-09 64.7 90 34.4
LjContig00272g0023351 Lotus japonicus HOM05D001848 ORTHO05D001295 6.0e-09 64.3 74 39.2
Psat2g010560 Pisum sativum HOM05D001848 ORTHO05D001295 6.0e-09 64.3 70 42.9
AUR62028704 Chenopodium quinoa HOM05D001848 ORTHO05D001295 7.9e-09 63.9 78 41.0
Glyma.18G191600 Glycine max HOM05D001848 ORTHO05D001295 7.9e-09 63.9 89 38.2
Lsat_1_v5_gn_7_113461 Lactuca sativa HOM05D001848 ORTHO05D001295 7.9e-09 63.9 105 35.2
Nn7g37661 Nelumbo nucifera HOM05D001848 ORTHO05D001295 7.9e-09 63.9 95 36.8
PGSC0003DMG400022295 Solanum tuberosum HOM05D001848 ORTHO05D001295 7.9e-09 63.9 99 35.4
arahy.Tifrunner.gnm1.ann1.QR3PTX Arachis hypogaea HOM05D001848 ORTHO05D001295 1.3e-08 63.2 96 34.4
PGR031G3783 Punica granatum HOM05D001848 ORTHO05D001295 1.3e-08 63.2 77 40.3
arahy.Tifrunner.gnm1.ann1.0X4CPT Arachis hypogaea HOM05D001848 ORTHO05D001295 1.8e-08 62.8 92 35.9
arahy.Tifrunner.gnm1.ann1.UI26XR Arachis hypogaea HOM05D001848 ORTHO05D001295 1.8e-08 62.8 93 36.6
PSO210G3247 Papaver somniferum HOM05D001848 ORTHO05D001295 1.8e-08 62.8 97 37.1
PSO832G2089 Papaver somniferum HOM05D001848 ORTHO05D001295 1.8e-08 62.8 97 37.1
TWI38G0794 Tripterygium wilfordii HOM05D001848 ORTHO05D001295 1.8e-08 62.8 102 32.4
arahy.Tifrunner.gnm1.ann1.N7EMKY Arachis hypogaea HOM05D001848 ORTHO05D001295 2.3e-08 62.4 92 35.9
Lalb_Chr15g0081801 Lupinus albus HOM05D001848 ORTHO05D001295 3.0e-08 62.0 98 35.7
ATR0712G087 Amborella trichopoda HOM05D001848 ORTHO05D001295 3.9e-08 61.6 95 35.8
AL8G21340 Arabidopsis lyrata HOM05D001848 ORTHO05D001295 3.9e-08 61.6 100 29.0
AT5G48490 Arabidopsis thaliana HOM05D001848 ORTHO05D001295 3.9e-08 61.6 102 33.3
ECA236G2606 Erigeron canadensis HOM05D001848 ORTHO05D001295 3.9e-08 61.6 96 36.5
Migut.H01781 Erythranthe guttata HOM05D001848 ORTHO05D001295 3.9e-08 61.6 101 35.6
Glyma.08G324100 Glycine max HOM05D001848 ORTHO05D001295 3.9e-08 61.6 74 37.8
MD11G1207300 Malus domestica HOM05D001848 ORTHO05D001295 3.9e-08 61.6 86 34.9
Prupe.8G102700 Prunus persica HOM05D001848 ORTHO05D001295 3.9e-08 61.6 97 36.1
AL8G21350 Arabidopsis lyrata HOM05D001848 ORTHO05D001295 5.1e-08 61.2 102 32.4
VMungo1383G1433 Vigna mungo HOM05D001848 ORTHO05D001295 5.1e-08 61.2 74 39.2
Glyma.11G120400 Glycine max HOM05D001848 ORTHO05D001295 6.7e-08 60.8 92 34.8
arahy.Tifrunner.gnm1.ann1.IET74Z Arachis hypogaea HOM05D001848 ORTHO05D001295 8.7e-08 60.5 92 34.8
Oeu019626.1 Olea europaea HOM05D001848 ORTHO05D001295 8.7e-08 60.5 96 33.3
Ca_06356_v3 Cicer arietinum L. HOM05D001848 ORTHO05D001295 1.1e-07 60.1 97 34.0
VMungo0540G1563 Vigna mungo HOM05D001848 ORTHO05D001295 1.1e-07 60.1 89 34.8
Peaxi162Scf00235g00085 Petunia axillaris HOM05D001848 ORTHO05D001295 1.5e-07 59.7 98 35.7
Phvul.006G050100 Phaseolus vulgaris HOM05D001848 ORTHO05D001295 1.5e-07 59.7 91 34.1
Gohir.D05G377400 Gossypium hirsutum HOM05D001848 ORTHO05D001295 2.5e-07 58.9 83 39.8
Gorai.009G445200 Gossypium raimondii HOM05D001848 ORTHO05D001295 2.5e-07 58.9 83 39.8
MBI16_g31711_MAGBIO Magnolia biondii HOM05D001848 ORTHO05D001295 2.5e-07 58.9 89 37.1
SEGI_37024 Sequoiadendron giganteum HOM05D001848 ORTHO05D001295 2.5e-07 58.9 102 33.3
Zm00001eb305230 Zea mays HOM05D001848 ORTHO05D001295 3.3e-07 58.5 95 37.9
EL10Ac5g10630 Beta vulgaris HOM05D001848 ORTHO05D001295 4.3e-07 58.2 101 36.6
Sc17g0001780 Simmondsia chinensis HOM05D001848 ORTHO05D001295 4.3e-07 58.2 64 39.1
BcaC03g17655 Brassica carinata HOM05D001848 ORTHO05D001295 7.4e-07 57.4 103 31.1
Atru.chr6.3548 Acer truncatum HOM05D001848 ORTHO05D001295 9.6e-07 57.0 96 36.5
C02p56570 Brassica napus HOM05D001848 ORTHO05D001295 9.6e-07 57.0 103 31.1
BolC2t11715H Brassica oleracea HOM05D001848 ORTHO05D001295 9.6e-07 57.0 103 31.1
MELO3C013103.2 Cucumis melo HOM05D001848 ORTHO05D001295 9.6e-07 57.0 93 35.5
Duzib213G0158 Durio zibethinus HOM05D001848 ORTHO05D001295 9.6e-07 57.0 91 35.2
Lj3g0013447 Lotus japonicus HOM05D001848 ORTHO05D001295 9.6e-07 57.0 94 33.0
Lj6g0007816 Lotus japonicus HOM05D001848 ORTHO05D001295 9.6e-07 57.0 90 36.7
Thecc.07G025000 Theobroma cacao HOM05D001848 ORTHO05D001295 9.6e-07 57.0 87 33.3
Nitab4.5_0001160g0120 Nicotiana tabacum HOM05D001848 ORTHO05D001295 1.3e-06 56.6 96 31.2
Actinidia23792 Actinidia chinensis HOM05D001848 ORTHO05D001295 1.6e-06 56.2 74 37.8
Ciclev10010463m.g Citrus clementina HOM05D001848 ORTHO05D001295 1.6e-06 56.2 69 39.1
BcaB07g30026 Brassica carinata HOM05D001848 ORTHO05D001295 2.1e-06 55.8 85 34.1
CAN.G322.111 Capsicum annuum HOM05D001848 ORTHO05D001295 2.1e-06 55.8 95 32.6
Lalb_Chr01g0002711 Lupinus albus HOM05D001848 ORTHO05D001295 2.1e-06 55.8 94 30.9
Aqoxy1G04063 Aquilegia oxysepala HOM05D001848 ORTHO05D001295 2.8e-06 55.5 95 35.8
arahy.Tifrunner.gnm1.ann1.V0MKZ1 Arachis hypogaea HOM05D001848 ORTHO05D001295 3.7e-06 55.1 74 37.8
A02p37500 Brassica napus HOM05D001848 ORTHO05D001295 3.7e-06 55.1 85 34.1
BraA02t08737Z Brassica rapa HOM05D001848 ORTHO05D001295 3.7e-06 55.1 85 34.1
Haze_03503 Corylus avellana HOM05D001848 ORTHO05D001295 3.7e-06 55.1 63 36.5
TAR626G1904 Trochodendron aralioides HOM05D001848 ORTHO05D001295 3.7e-06 55.1 69 36.2
BcaB08g35902 Brassica carinata HOM05D008197 ORTHO05D027059 4.8e-06 54.7 103 34.0
AUR62028709 Chenopodium quinoa HOM05D001848 ORTHO05D001295 4.8e-06 54.7 95 30.5
DCAR_013205 Daucus carota HOM05D001848 ORTHO05D001295 4.8e-06 54.7 88 34.1
TPR.G30659 Trifolium pratense HOM05D001848 ORTHO05D001295 6.2e-06 54.3 91 35.2
DCAR_017099 Daucus carota HOM05D001848 ORTHO05D001295 8.2e-06 53.9 99 29.3
Sc17g0001770 Simmondsia chinensis HOM05D001848 ORTHO05D001295 8.2e-06 53.9 86 30.2


User provided reference genes

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