Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 2.8e-310 1067.8 530 100.0
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 2.1e-302 1041.6 530 97.4
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 1.0e-301 1039.3 530 96.2
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 7.0e-298 1026.5 534 94.9
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 1.2e-286 989.2 530 93.0
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 4.7e-270 934.1 537 88.1
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 1.1e-266 922.9 535 85.2
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 1.0e-264 916.4 541 83.9
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 7.3e-263 910.2 540 84.4
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 1.1e-261 906.4 543 84.5
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 3.9e-256 887.9 547 81.2
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 3.8e-243 844.7 535 79.1
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 2.4e-213 745.7 533 70.0
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 5.5e-194 681.4 438 79.0
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 2.1e-193 679.5 530 61.7
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 1.5e-191 673.3 539 61.2
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 3.4e-191 672.2 532 64.7
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 1.4e-189 666.8 533 64.4
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 1.4e-189 666.8 536 62.9
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 9.1e-189 664.1 532 63.0
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 9.1e-189 664.1 532 63.0
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 1.2e-188 663.7 535 62.2
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 1.6e-188 663.3 530 62.1
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 1.6e-188 663.3 531 64.2
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 2.7e-188 662.5 531 62.0
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 4.5e-188 661.8 529 61.8
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 4.5e-188 661.8 536 63.2
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 7.7e-188 661.0 538 62.6
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 7.7e-188 661.0 529 61.8
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 7.7e-188 661.0 535 62.2
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.0e-187 660.6 530 63.4
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.3e-187 660.2 524 62.6
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.3e-187 660.2 524 62.6
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 1.7e-187 659.8 532 63.2
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 2.9e-187 659.1 532 63.9
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 2.9e-187 659.1 539 60.5
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 6.5e-187 657.9 567 59.1
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 6.5e-187 657.9 529 62.8
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 1.1e-186 657.1 542 60.7
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 1.5e-186 656.8 532 62.4
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 1.5e-186 656.8 567 58.9
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 1.9e-186 656.4 532 63.2
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 3.2e-186 655.6 539 63.3
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 5.5e-186 654.8 530 60.9
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 7.2e-186 654.4 540 60.0
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 9.5e-186 654.1 543 60.4
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 9.5e-186 654.1 534 61.4
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 1.6e-185 653.3 546 59.3
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 2.7e-185 652.5 532 61.8
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 2.7e-185 652.5 535 61.3
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 4.7e-185 651.7 547 58.7
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 6.1e-185 651.4 524 62.2
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 6.1e-185 651.4 524 62.2
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 1.0e-184 650.6 534 59.2
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 1.4e-184 650.2 543 59.1
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 3.0e-184 649.0 530 61.1
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 7.5e-183 644.4 531 62.1
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 1.3e-182 643.7 544 58.5
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 6.3e-182 641.3 543 58.6
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 1.4e-181 640.2 545 58.3
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.8e-181 639.8 557 59.8
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.8e-181 639.8 557 59.8
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 2.4e-181 639.4 536 58.8
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 3.1e-181 639.0 532 61.3
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 3.1e-181 639.0 536 60.8
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 5.4e-181 638.3 532 58.6
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 7.0e-181 637.9 534 62.5
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 1.2e-180 637.1 530 59.6
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 4.5e-180 635.2 542 59.0
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 1.7e-179 633.3 528 60.8
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 3.8e-179 632.1 525 61.5
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 2.5e-178 629.4 560 56.8
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 2.1e-177 626.3 530 59.8
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 8.0e-177 624.4 529 60.5
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.4e-176 623.6 529 60.5
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 1.8e-176 623.2 533 58.7
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 3.0e-176 622.5 533 59.8
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 3.0e-176 622.5 534 58.6
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 6.8e-176 621.3 562 59.1
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.5e-175 620.2 531 61.4
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 2.6e-175 619.4 531 59.9
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 3.4e-175 619.0 511 61.3
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 9.8e-175 617.5 531 60.5
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 1.3e-174 617.1 530 58.1
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 8.3e-174 614.4 530 58.5
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 7.0e-173 611.3 499 60.5
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 1.6e-172 610.1 536 57.1
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 2.7e-172 609.4 530 58.5
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 5.9e-172 608.2 551 57.2
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 1.7e-171 606.7 544 56.1
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 2.5e-170 602.8 526 58.2
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 2.8e-169 599.4 530 57.4
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 3.1e-168 595.9 521 57.6
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 5.2e-168 595.1 525 57.1
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 8.9e-168 594.3 542 57.0
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 1.5e-167 593.6 543 58.6
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.3e-166 590.5 543 57.8
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.5e-162 577.0 475 60.2
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 2.1e-161 573.2 485 58.6
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 3.1e-160 569.3 529 55.0
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 1.2e-159 567.4 535 53.5
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 1.7e-158 563.5 507 54.6
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 2.2e-158 563.1 530 56.8
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 1.4e-157 560.5 475 57.5
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 4.1e-157 558.9 472 59.7
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 4.6e-156 555.4 533 54.2
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 4.6e-156 555.4 430 63.7
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 1.1e-154 550.8 488 58.0
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 2.3e-152 543.1 459 60.8
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 1.3e-150 537.3 408 65.7
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 4.1e-149 532.3 448 57.8
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 1.8e-144 516.9 399 63.7
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 1.9e-141 506.9 472 55.9
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 1.3e-139 500.7 547 57.8
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 1.2e-132 477.6 322 70.5
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 4.6e-132 475.7 322 70.5
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 3.9e-131 472.6 302 74.5
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 1.0e-123 448.0 322 64.6
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 5.1e-123 445.7 317 67.5
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 3.0e-115 419.9 477 43.6
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 3.9e-115 419.5 399 54.6
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 8.2e-113 411.8 299 64.9
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 2.4e-112 410.2 532 43.2
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 3.2e-109 399.8 589 38.7
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 4.6e-108 396.0 355 62.3
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 9.1e-104 381.7 278 73.4
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 9.7e-98 361.7 252 68.3
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 1.5e-95 354.4 265 66.4
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 1.6e-92 344.4 249 66.3
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 1.4e-80 304.7 328 50.6
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 2.7e-79 300.4 263 64.3
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 1.7e-78 297.7 263 63.9
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 8.5e-78 295.4 208 67.8
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 1.0e-75 288.5 240 59.2
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 6.3e-73 279.3 210 64.3
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 2.9e-70 270.4 165 83.6
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 1.4e-59 235.0 177 68.4
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 3.0e-59 233.8 124 84.7
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 4.0e-59 233.4 129 79.8
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 4.0e-59 233.4 129 79.8
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 4.4e-50 203.4 453 30.2
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 3.2e-48 197.2 231 48.5
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 3.5e-47 193.7 106 80.2
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 7.5e-42 176.0 182 47.8
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 2.5e-37 161.0 101 76.2
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 7.3e-37 159.5 236 39.0
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 2.8e-36 157.5 153 51.6
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 3.6e-36 157.1 185 47.6
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 8.9e-35 152.5 76 88.2
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 8.9e-35 152.5 76 88.2
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 1.7e-33 148.3 85 77.6
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 8.4e-33 146.0 271 35.8
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 7.8e-31 139.4 109 64.2
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 2.3e-30 137.9 171 45.6
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 6.6e-30 136.3 273 35.5
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 1.9e-29 134.8 175 42.9
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 4.7e-28 130.2 72 88.9
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 1.4e-27 128.6 98 62.2
CDE07G0680 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 2.4e-27 127.9 176 44.9
RcHm_v2.0_Chr5g0079391 Rosa chinensis HOM05D004336 ORTHO05D005367 4.6e-23 113.6 98 58.2
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 3.0e-22 110.9 59 81.4
HanXRQChr04g0109771 Helianthus annuus HOM05D004336 ORTHO05D005367 7.4e-13 79.7 96 42.7
C09p46170 Brassica napus HOM05D004336 ORTHO05D040132 3.7e-12 77.4 51 70.6
BolC9t57482H Brassica oleracea HOM05D004336 ORTHO05D040132 3.7e-12 77.4 51 70.6
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 5.5e-08 63.5 34 91.2


User provided reference genes

Program Settings