Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p13800 Brassica napus HOM05D004836 ORTHO05D005150 0.0e+00 3025.7 1816 100.0
BraA03t10683Z Brassica rapa HOM05D004836 ORTHO05D005150 0.0e+00 2969.9 1879 96.1
BolC3t14046H Brassica oleracea HOM05D004836 ORTHO05D005150 0.0e+00 2766.9 1810 93.7
C03p16240 Brassica napus HOM05D004836 ORTHO05D005150 0.0e+00 2765.7 1810 92.9
Sp6g17700 Schrenkiella parvula HOM05D004836 ORTHO05D005150 0.0e+00 2053.1 1837 72.5
AT5G55820 Arabidopsis thaliana HOM05D004836 ORTHO05D005150 0.0e+00 1756.1 1826 65.4
AL8G31380 Arabidopsis lyrata HOM05D004836 ORTHO05D005150 0.0e+00 1672.9 1893 60.3
Carub.0008s1617 Capsella rubella HOM05D004836 ORTHO05D005150 0.0e+00 1649.0 1829 60.4
Thhalv10012421m.g Eutrema salsugineum HOM05D004836 ORTHO05D005150 0.0e+00 1643.6 1834 63.4
CARHR269190 Cardamine hirsuta HOM05D004836 ORTHO05D005150 0.0e+00 1642.1 1922 59.0
Aa31LG3G11720 Aethionema arabicum HOM05D004836 ORTHO05D005150 0.0e+00 1278.1 1998 50.4
BcaB08g35940 Brassica carinata HOM05D004836 ORTHO05D005150 7.2e-286 988.4 1077 60.5
THA.LOC104811669 Tarenaya hassleriana HOM05D004836 ORTHO05D005150 5.1e-239 832.8 2045 39.3
BcaC01g06394 Brassica carinata HOM05D004836 ORTHO05D005150 2.1e-147 528.5 295 90.8
BcaB08g35941 Brassica carinata HOM05D004836 ORTHO05D005150 4.0e-119 434.5 390 66.9
CiPaw.11G204300 Carya illinoinensis HOM05D004836 ORTHO05D005150 1.5e-60 240.0 1984 26.9
QL08p004015 Quercus lobata HOM05D004836 ORTHO05D005150 4.1e-55 221.9 1698 25.7
Manes.03G141700 Manihot esculenta HOM05D004836 ORTHO05D005150 7.0e-55 221.1 1866 26.8
Gohir.A01G091700 Gossypium hirsutum HOM05D004836 ORTHO05D005150 1.2e-54 220.3 733 37.2
C02p15810 Brassica napus HOM05D004836 ORTHO05D017167 3.5e-54 218.8 213 59.6
RcHm_v2.0_Chr1g0333641 Rosa chinensis HOM05D004836 ORTHO05D005150 3.5e-54 218.8 692 37.9
MD03G1024600 Malus domestica HOM05D004836 ORTHO05D005150 5.0e-53 214.9 1962 26.6
Dinv40862 Davidia involucrata HOM05D004836 ORTHO05D005150 1.8e-50 206.5 666 38.0
Gohir.D01G061900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 1.2e-49 203.8 1938 26.6
Gorai.002G100500 Gossypium raimondii HOM05D004836 ORTHO05D005150 2.6e-49 202.6 1939 26.3
Ciclev10007227m.g Citrus clementina HOM05D004836 ORTHO05D005150 8.3e-48 197.6 459 35.7
Haze_09829 Corylus avellana HOM05D004836 ORTHO05D005150 5.4e-47 194.9 1717 24.6
MD11G1029700 Malus domestica HOM05D004836 ORTHO05D005150 1.6e-46 193.4 1747 24.5
Thecc.07G013200 Theobroma cacao HOM05D004836 ORTHO05D005150 2.0e-46 193.0 1902 26.7
FAN06G1091 Fragaria x ananassa HOM05D004836 ORTHO05D005150 3.5e-46 192.2 706 33.7
CANSAT35G0529 Cannabis sativa HOM05D004836 ORTHO05D005150 5.0e-45 188.3 671 34.9
FvH4_7g06090 Fragaria vesca HOM05D004836 ORTHO05D005150 1.1e-44 187.2 708 35.2
Cpa.g.sc12.114 Carica papaya HOM05D004836 ORTHO05D005150 1.5e-44 186.8 647 30.4
FAN01G1635 Fragaria x ananassa HOM05D004836 ORTHO05D005150 1.5e-44 186.8 703 34.6
Duzib213G0869 Durio zibethinus HOM05D004836 ORTHO05D005150 3.3e-44 185.7 1677 23.8
FAN03G2987 Fragaria x ananassa HOM05D004836 ORTHO05D005150 4.3e-44 185.3 741 33.9
FAN10G2990 Fragaria x ananassa HOM05D004836 ORTHO05D005150 1.2e-43 183.7 707 31.8
CANSAT11G1576 Cannabis sativa HOM05D004836 ORTHO05D005150 1.0e-42 180.6 672 35.1
Gohir.D13G135900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 6.8e-42 177.9 703 36.3
Atru.chr2.3693 Acer truncatum HOM05D004836 ORTHO05D005150 8.9e-42 177.6 652 31.3
ClCG09G021380 Citrullus lanatus HOM05D004836 ORTHO05D005150 5.8e-41 174.9 466 33.3
Dinv10337 Davidia involucrata HOM05D004836 ORTHO05D005150 1.3e-40 173.7 1899 26.1
COL.COLO4_09837 Corchorus olitorius HOM05D004836 ORTHO05D005150 2.2e-40 172.9 1598 25.5
Prupe.5G032900 Prunus persica HOM05D004836 ORTHO05D005150 1.1e-39 170.6 1935 25.0
CsaV3_7G011380 Cucumis sativus L. HOM05D004836 ORTHO05D005150 2.4e-39 169.5 686 32.8
Actinidia37154 Actinidia chinensis HOM05D004836 ORTHO05D005150 5.4e-39 168.3 669 34.4
Gorai.013G152400 Gossypium raimondii HOM05D004836 ORTHO05D005150 9.2e-39 167.5 1967 26.8
MELO3C024947.2 Cucumis melo HOM05D004836 ORTHO05D005150 1.2e-38 167.2 401 35.9
Prupe.7G022200 Prunus persica HOM05D004836 ORTHO05D005150 1.7e-37 163.3 1910 25.2
Sed0003689 Sechium edule HOM05D004836 ORTHO05D005150 2.3e-37 162.9 490 31.6
BolC2t07687H Brassica oleracea HOM05D000026 ORTHO05D017167 5.0e-37 161.8 152 58.6
Eucgr.F02046 Eucalyptus grandis HOM05D004836 ORTHO05D005150 6.6e-37 161.4 622 35.5
Gohir.A13G132500 Gossypium hirsutum HOM05D004836 ORTHO05D005150 1.5e-36 160.2 1957 26.6
Rhsim06G0230000 Rhododendron simsii HOM05D004836 ORTHO05D005150 3.3e-36 159.1 649 31.9
CSS0029600 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 2.1e-35 156.4 385 35.1
Manes.15G059500 Manihot esculenta HOM05D004836 ORTHO05D005150 8.1e-35 154.5 389 33.9
Sabra16G0241300 Salix brachista HOM05D004836 ORTHO05D005150 8.1e-35 154.5 2007 26.7
CSS0003147 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 1.1e-34 154.1 387 35.4
Cc05_g14960 Coffea canephora HOM05D004836 ORTHO05D005150 1.8e-34 153.3 720 31.4
Potri.001G368200 Populus trichocarpa HOM05D004836 ORTHO05D005150 8.9e-34 151.0 1853 26.6
Actinidia05002 Actinidia chinensis HOM05D004836 ORTHO05D005150 9.8e-33 147.5 660 34.1
PGSC0003DMG400022276 Solanum tuberosum HOM05D004836 ORTHO05D005150 1.7e-32 146.7 731 32.1
Lj5g0000015 Lotus japonicus HOM05D004836 ORTHO05D005150 1.1e-31 144.1 439 32.1
Nitab4.5_0002736g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 3.2e-31 142.5 754 33.3
Nitab4.5_0007415g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 7.1e-31 141.4 501 32.3
Oeu014362.2 Olea europaea HOM05D004836 ORTHO05D005150 7.1e-31 141.4 1932 23.8
TWI39G0854 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 7.1e-31 141.4 502 37.6
GSVIVG01014692001 Vitis vinifera HOM05D004836 ORTHO05D005150 1.2e-30 140.6 1944 25.7
PGR083G2228 Punica granatum HOM05D004836 ORTHO05D005150 2.1e-30 139.8 1885 24.7
TWI38G0981 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 3.5e-30 139.0 1907 26.0
Sopen07g033810 Solanum pennellii HOM05D004836 ORTHO05D005150 6.0e-30 138.3 728 31.0
Solyc07g065600.3 Solanum lycopersicum HOM05D004836 ORTHO05D005150 2.3e-29 136.3 728 31.0
CAN.G623.12 Capsicum annuum HOM05D004836 ORTHO05D005150 4.3e-28 132.1 643 32.2
Lalb_Chr06g0166281 Lupinus albus HOM05D004836 ORTHO05D005150 1.2e-27 130.6 681 31.1
Glyma.10G277400 Glycine max HOM05D004836 ORTHO05D005150 4.7e-27 128.6 652 31.3
TAR624G0729 Trochodendron aralioides HOM05D004836 ORTHO05D005150 4.7e-27 128.6 665 34.9
arahy.Tifrunner.gnm1.ann1.D5NCPP Arachis hypogaea HOM05D004836 ORTHO05D005150 1.4e-26 127.1 406 32.0
Glyma.20G112200 Glycine max HOM05D004836 ORTHO05D005150 6.8e-26 124.8 671 32.5
HanXRQChr03g0074011 Helianthus annuus HOM05D004836 ORTHO05D005150 6.8e-26 124.8 641 30.6
Phvul.003G265300 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 3.4e-25 122.5 655 32.2
Phvul.007G023800 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 5.8e-25 121.7 665 33.2
MD11G1030200 Malus domestica HOM05D004836 ORTHO05D005150 9.9e-25 120.9 281 36.3
TAR626G1210 Trochodendron aralioides HOM05D004836 ORTHO05D005150 2.2e-24 119.8 1660 23.9
VMungo0720G3177 Vigna mungo HOM05D004836 ORTHO05D005150 3.8e-24 119.0 417 33.1
MBI15_g03895_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 6.4e-24 118.2 432 31.5
Sed0002835 Sechium edule HOM05D004836 ORTHO05D005150 8.4e-24 117.9 1966 24.7
MD00G1168400 Malus domestica HOM05D004836 ORTHO05D005150 1.4e-23 117.1 290 35.9
Nn1g03169 Nelumbo nucifera HOM05D004836 ORTHO05D005150 2.4e-23 116.3 407 30.5
Rhsim04G0012500 Rhododendron simsii HOM05D004836 ORTHO05D005150 3.2e-23 115.9 426 31.2
Migut.M01650 Erythranthe guttata HOM05D004836 ORTHO05D005150 9.2e-23 114.4 672 30.8
SGA_v2.0_scaffold168G38564 Striga asiatica HOM05D004836 ORTHO05D005150 1.6e-22 113.6 666 30.5
BcaB08g35942 Brassica carinata HOM05D004836 ORTHO05D005150 2.7e-22 112.8 114 56.1
AUR62017108 Chenopodium quinoa HOM05D004836 ORTHO05D005150 8.6e-21 107.8 355 32.4
AUR62036461 Chenopodium quinoa HOM05D004836 ORTHO05D005150 8.6e-21 107.8 355 31.5
Medtr1g111660 Medicago truncatula HOM05D004836 ORTHO05D005150 8.6e-21 107.8 670 28.2
arahy.Tifrunner.gnm1.ann1.LI7RG4 Arachis hypogaea HOM05D004836 ORTHO05D005150 4.3e-20 105.5 1907 26.1
Lsat_1_v5_gn_9_90560 Lactuca sativa HOM05D004836 ORTHO05D005150 1.6e-19 103.6 400 31.5
Oeu046935.1 Olea europaea HOM05D004836 ORTHO05D005150 1.6e-19 103.6 1724 23.3
Hund23108 Selenicereus undatus HOM05D004836 ORTHO05D005150 4.7e-19 102.1 686 32.5
Sc03g0011330 Simmondsia chinensis HOM05D004836 ORTHO05D005150 6.2e-19 101.7 422 30.1
ECA240G1942 Erigeron canadensis HOM05D004836 ORTHO05D000368 8.1e-19 101.3 643 33.7
Sc16g0008100 Simmondsia chinensis HOM05D004836 ORTHO05D005150 1.4e-18 100.5 1963 23.4
Aqoxy4G02292 Aquilegia oxysepala HOM05D004836 ORTHO05D005150 2.4e-18 99.8 412 30.3
Lalb_Chr21g0309081 Lupinus albus HOM05D004836 ORTHO05D005150 3.1e-18 99.4 1842 23.8
Hma1.2p1_1109F.1_g258180 Hydrangea macrophylla HOM05D004836 ORTHO05D005150 1.2e-17 97.4 321 30.8
Sc03g0011420 Simmondsia chinensis HOM05D004836 ORTHO05D005150 1.2e-17 97.4 422 29.6
TPR.G26309 Trifolium pratense HOM05D004836 ORTHO05D005150 1.2e-17 97.4 685 25.4
Hund20644 Selenicereus undatus HOM05D004836 ORTHO05D005150 1.5e-17 97.1 82 59.8
HanXRQChr13g0408421 Helianthus annuus HOM05D004836 ORTHO05D005150 4.4e-17 95.5 629 33.7
TWI39G0173 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 4.9e-16 92.0 91 50.5
Ah.06g181450 Amaranthus hybridus HOM05D004836 ORTHO05D005150 1.1e-15 90.9 444 33.6
Psat6g230520 Pisum sativum HOM05D004836 ORTHO05D005150 1.4e-15 90.5 654 29.4
AUR62044127 Chenopodium quinoa HOM05D004836 ORTHO05D005150 2.4e-15 89.7 97 50.5
EL10Ac4g07562 Beta vulgaris HOM05D004836 ORTHO05D005150 3.2e-15 89.4 127 42.5
Ca_25650_v3 Cicer arietinum L. HOM05D004836 ORTHO05D005150 3.2e-15 89.4 1894 23.5
MD03G1025800 Malus domestica HOM05D004836 ORTHO05D005150 4.2e-15 89.0 88 60.2
Peaxi162Scf00139g01321 Petunia axillaris HOM05D004836 ORTHO05D005150 9.3e-15 87.8 1691 23.2
AUR62006337 Chenopodium quinoa HOM05D004836 ORTHO05D005150 6.6e-13 81.6 151 44.4
vmacro11592 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 1.5e-12 80.5 323 28.5
Actinidia30401 Actinidia chinensis HOM05D004836 ORTHO05D005150 2.5e-12 79.7 63 60.3
ATR0751G141 Amborella trichopoda HOM05D004836 ORTHO05D005150 2.5e-12 79.7 182 36.8
unitig_22.g5946 Utricularia gibba HOM05D004836 ORTHO05D005150 2.5e-12 79.7 73 49.3
Cpa.g.c38368 Carica papaya HOM05D004836 ORTHO05D005150 9.6e-12 77.8 55 63.6
PSO675G3612 Papaver somniferum HOM05D004836 ORTHO05D005150 1.1e-10 74.3 267 28.5
PSO541G5284 Papaver somniferum HOM05D004836 ORTHO05D005150 1.4e-10 73.9 267 28.8
CDE04G0223 Ceratophyllum demersum HOM05D000588 ORTHO05D005150 3.1e-10 72.8 140 42.9
DCAR_013235 Daucus carota HOM05D004836 ORTHO05D005150 6.9e-10 71.6 1913 23.6
SEGI_04158 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 1.2e-09 70.9 86 47.7
SEGI_26437 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 1.2e-09 70.9 85 48.2
RhsimUnG0156400 Rhododendron simsii HOM05D000074 ORTHO05D001262 2.2e-08 66.6 58 53.4
Pp3c1_42830 Physcomitrium patens HOM05D014698 ORTHO05D016532 4.9e-08 65.5 73 53.4
CDE02G4444 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 8.4e-08 64.7 115 30.4
HanXRQChr03g0074021 Helianthus annuus HOM05D004836 ORTHO05D005150 8.4e-08 64.7 61 45.9
CDE02G2584 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 2.4e-07 63.2 59 59.3
Lj1A890T52 Lonicera japonica HOM05D004836 ORTHO05D005150 2.4e-07 63.2 350 25.7
C02p15800 Brassica napus HOM05D000026 ORTHO05D017167 5.4e-07 62.0 78 46.2
arahy.Tifrunner.gnm1.ann1.TB163P Arachis hypogaea HOM05D004836 ORTHO05D005150 9.3e-07 61.2 356 26.7
Os09g0477700 Oryza sativa ssp. japonica HOM05D028105 ORTHO05D005150 4.6e-06 58.9 58 55.2
vmacro11593 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 6.0e-06 58.5 105 36.2


User provided reference genes

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