Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p13630 Brassica napus HOM05D003788 ORTHO05D004633 0.0e+00 1491.5 754 100.0
BraA03t10667Z Brassica rapa HOM05D003788 ORTHO05D004633 0.0e+00 1448.0 754 97.3
BcaC01g06410 Brassica carinata HOM05D003788 ORTHO05D004633 0.0e+00 1273.5 773 87.5
C03p15980 Brassica napus HOM05D003788 ORTHO05D004633 0.0e+00 1254.6 774 86.4
BolC3t14026H Brassica oleracea HOM05D003788 ORTHO05D004633 0.0e+00 1252.7 773 86.5
BcaB01g04387 Brassica carinata HOM05D003788 ORTHO05D004633 0.0e+00 1148.7 777 81.3
Sp6g18100 Schrenkiella parvula HOM05D003788 ORTHO05D004633 5.5e-272 941.0 831 67.1
Thhalv10012702m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 1.7e-268 929.5 832 67.5
AL8G31880 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 7.7e-250 867.5 836 64.1
AT5G56250 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 2.3e-233 812.8 831 62.3
CARHR269650 Cardamine hirsuta HOM05D003788 ORTHO05D004633 2.7e-226 789.3 827 60.6
Carub.0008s1657 Capsella rubella HOM05D003788 ORTHO05D004633 4.6e-226 788.5 830 60.1
A02p09250 Brassica napus HOM05D003788 ORTHO05D004633 9.5e-216 754.2 793 60.4
BcaB05g22252 Brassica carinata HOM05D003788 ORTHO05D004633 7.8e-202 708.0 766 60.4
C02p15400 Brassica napus HOM05D003788 ORTHO05D004633 2.2e-196 689.9 753 57.4
BolC2t07655H Brassica oleracea HOM05D003788 ORTHO05D004633 6.0e-194 681.8 759 56.9
C09p47500 Brassica napus HOM05D003788 ORTHO05D004633 5.3e-190 668.7 777 55.5
BcaC03g14234 Brassica carinata HOM05D003788 ORTHO05D004633 2.2e-188 663.3 759 56.3
BcaC04g20115 Brassica carinata HOM05D003788 ORTHO05D004633 1.1e-158 564.7 703 53.6
BolC9t57606H Brassica oleracea HOM05D003788 ORTHO05D004633 4.2e-155 552.7 702 53.0
A10p13510 Brassica napus HOM05D003788 ORTHO05D004633 3.8e-132 476.5 698 50.0
Aa31LG3G12140 Aethionema arabicum HOM05D003788 ORTHO05D004633 5.1e-108 396.4 936 38.8
Thhalv10012573m.g Eutrema salsugineum HOM05D003788 ORTHO05D004633 4.1e-102 376.7 971 38.5
THA.LOC104811704 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 7.1e-102 375.9 978 36.5
Carub.0008s1656 Capsella rubella HOM05D003788 ORTHO05D004633 2.1e-98 364.4 1005 36.3
AL8G31870 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 1.4e-97 361.7 984 37.8
AL191U10030 Arabidopsis lyrata HOM05D003788 ORTHO05D004633 3.4e-96 357.1 954 37.9
AT5G56240 Arabidopsis thaliana HOM05D003788 ORTHO05D004633 3.9e-92 343.6 975 35.8
C02p15420 Brassica napus HOM05D003788 ORTHO05D004633 7.3e-91 339.3 916 34.8
BolC2t07656H Brassica oleracea HOM05D003788 ORTHO05D004633 7.3e-91 339.3 916 34.8
BolC3t14027H Brassica oleracea HOM05D003788 ORTHO05D004633 5.3e-89 333.2 897 36.9
BcaC04g20117 Brassica carinata HOM05D003788 ORTHO05D004633 4.4e-88 330.1 928 35.1
BolC9t57603H Brassica oleracea HOM05D003788 ORTHO05D004633 1.3e-87 328.6 948 35.1
BcaC01g06409 Brassica carinata HOM05D003788 ORTHO05D004633 3.8e-87 327.0 909 36.2
C03p15990 Brassica napus HOM05D003788 ORTHO05D004633 8.4e-87 325.9 913 36.7
C09p47480 Brassica napus HOM05D003788 ORTHO05D004633 1.4e-86 325.1 957 34.9
CARHR269640 Cardamine hirsuta HOM05D003788 ORTHO05D004633 2.7e-85 320.9 891 37.9
BcaB05g22251 Brassica carinata HOM05D003788 ORTHO05D004633 3.9e-84 317.0 1004 35.0
BcaB01g04386 Brassica carinata HOM05D003788 ORTHO05D004633 4.8e-82 310.1 878 35.9
BcaC03g14236 Brassica carinata HOM05D003788 ORTHO05D004633 9.0e-81 305.8 806 35.2
A10p13490 Brassica napus HOM05D003788 ORTHO05D004633 9.0e-81 305.8 975 34.1
BraA10t43453Z Brassica rapa HOM05D003788 ORTHO05D004633 9.0e-81 305.8 975 34.1
BraA03t10668Z Brassica rapa HOM05D003788 ORTHO05D004633 4.5e-80 303.5 975 34.1
A02p09290 Brassica napus HOM05D003788 ORTHO05D004633 1.9e-78 298.1 972 33.0
BraA02t05991Z Brassica rapa HOM05D003788 ORTHO05D004633 5.4e-78 296.6 977 33.2
A03p13640 Brassica napus HOM05D003788 ORTHO05D004633 7.1e-78 296.2 994 33.4
Sp6g18090 Schrenkiella parvula HOM05D003788 ORTHO05D004633 6.2e-66 256.5 843 34.0
CARHR218680 Cardamine hirsuta HOM05D003788 ORTHO05D004633 5.7e-59 233.4 196 64.3
BraA02t05990Z Brassica rapa HOM05D003788 ORTHO05D004633 3.7e-50 204.1 189 65.6
GSVIVG01014849001 Vitis vinifera HOM05D003788 ORTHO05D004633 3.7e-50 204.1 883 29.4
HanXRQChr03g0079411 Helianthus annuus HOM05D003788 ORTHO05D004633 2.2e-47 194.9 866 27.9
Migut.H01707 Erythranthe guttata HOM05D003788 ORTHO05D004633 6.7e-44 183.3 687 30.0
Gohir.A08G026000 Gossypium hirsutum HOM05D003788 ORTHO05D004633 4.4e-43 180.6 323 41.8
Gohir.D08G036500 Gossypium hirsutum HOM05D003788 ORTHO05D004633 2.2e-42 178.3 390 38.2
Cfa016964 Carpinus fangiana HOM05D003788 ORTHO05D004633 1.1e-41 176.0 350 37.1
Gorai.004G034500 Gossypium raimondii HOM05D003788 ORTHO05D004633 9.1e-41 172.9 356 38.8
COL.COLO4_07793 Corchorus olitorius HOM05D003788 ORTHO05D004633 3.5e-40 171.0 405 34.1
THA.LOC104822683 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 3.5e-40 171.0 987 26.0
THA.LOC104810306 Tarenaya hassleriana HOM05D003788 ORTHO05D004633 2.2e-39 168.3 408 33.6
Manes.05G204500 Manihot esculenta HOM05D003788 ORTHO05D004633 6.5e-39 166.8 341 36.4
Duzib213G0477 Durio zibethinus HOM05D003788 ORTHO05D004633 1.1e-38 166.0 380 35.0
Thecc.07G001100 Theobroma cacao HOM05D003788 ORTHO05D004633 1.9e-38 165.2 430 32.3
Gohir.D13G131700 Gossypium hirsutum HOM05D003788 ORTHO05D004633 2.5e-38 164.9 379 36.7
TWI14G1222 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 3.2e-38 164.5 433 34.4
CiPaw.11G210900 Carya illinoinensis HOM05D003788 ORTHO05D004633 4.2e-38 164.1 456 33.1
Duzib268G1743 Durio zibethinus HOM05D003788 ORTHO05D004633 7.2e-38 163.3 430 33.3
QL08p000460 Quercus lobata HOM05D003788 ORTHO05D004633 2.1e-37 161.8 432 35.0
Gohir.A13G128300 Gossypium hirsutum HOM05D003788 ORTHO05D004633 2.7e-37 161.4 379 36.1
Gorai.013G147700 Gossypium raimondii HOM05D003788 ORTHO05D004633 4.7e-37 160.6 379 36.1
Haze_09919 Corylus avellana HOM05D003788 ORTHO05D004633 6.1e-37 160.2 374 35.6
Potri.001G472400 Populus trichocarpa HOM05D003788 ORTHO05D004633 6.1e-37 160.2 478 34.5
ECA236G3073 Erigeron canadensis HOM05D003788 ORTHO05D004633 2.3e-36 158.3 918 26.8
TWI39G0992 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 2.3e-36 158.3 434 33.6
MD11G1046500 Malus domestica HOM05D003788 ORTHO05D004633 5.2e-36 157.1 402 34.6
Rhsim06G0235500 Rhododendron simsii HOM05D003788 ORTHO05D004633 5.2e-36 157.1 1114 25.0
Atru.chr2.3902 Acer truncatum HOM05D003788 ORTHO05D004633 8.8e-36 156.4 395 32.7
Ciclev10007254m.g Citrus clementina HOM05D003788 ORTHO05D004633 8.8e-36 156.4 409 33.5
MD03G1043400 Malus domestica HOM05D003788 ORTHO05D004633 8.8e-36 156.4 412 36.2
ClCG00G001230 Citrullus lanatus HOM05D003788 ORTHO05D004633 1.5e-35 155.6 356 34.3
ClCG10G003960 Citrullus lanatus HOM05D003788 ORTHO05D004633 1.5e-35 155.6 356 34.3
CSS0001498 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 2.0e-35 155.2 398 33.4
CSS0046183 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 2.0e-35 155.2 398 33.4
Sed0023936 Sechium edule HOM05D003788 ORTHO05D004633 2.6e-35 154.8 365 34.2
ClCG10G003840 Citrullus lanatus HOM05D003788 ORTHO05D004633 3.3e-35 154.5 358 34.6
CSS0022631 Camellia sinensis var. sinensis HOM05D003788 ORTHO05D004633 9.7e-35 152.9 446 31.8
Manes.01G007100 Manihot esculenta HOM05D003788 ORTHO05D004633 9.7e-35 152.9 555 29.0
Sabra16G0320700 Salix brachista HOM05D003788 ORTHO05D004633 9.7e-35 152.9 439 33.7
Dinv40920 Davidia involucrata HOM05D003788 ORTHO05D004633 1.7e-34 152.1 390 35.4
Lsat_1_v5_gn_7_115701 Lactuca sativa HOM05D003788 ORTHO05D004633 1.7e-34 152.1 885 27.0
Zm00001eb079970 Zea mays HOM05D003788 ORTHO05D004633 1.7e-34 152.1 375 33.9
Eucgr.F01984 Eucalyptus grandis HOM05D003788 ORTHO05D004633 6.3e-34 150.2 444 32.9
HanXRQChr17g0546861 Helianthus annuus HOM05D003788 ORTHO05D004633 8.2e-34 149.8 887 25.7
Sabra11G0137700 Salix brachista HOM05D003788 ORTHO05D004633 8.2e-34 149.8 462 33.1
Prupe.6G035800 Prunus persica HOM05D003788 ORTHO05D004633 1.1e-33 149.4 420 35.0
DCAR_013754 Daucus carota HOM05D003788 ORTHO05D004633 1.4e-33 149.1 329 36.2
FAN25G3203 Fragaria x ananassa HOM05D003788 ORTHO05D004633 1.4e-33 149.1 390 35.4
FvH4_3g41530 Fragaria vesca HOM05D003788 ORTHO05D004633 1.8e-33 148.7 393 35.1
FAN11G0056 Fragaria x ananassa HOM05D003788 ORTHO05D004633 1.8e-33 148.7 393 35.1
Cc05_g15760 Coffea canephora HOM05D003788 ORTHO05D004633 3.1e-33 147.9 390 33.3
Hma1.2p1_0321F.1_g124360 Hydrangea macrophylla HOM05D003788 ORTHO05D004633 3.1e-33 147.9 336 37.2
PGR031G1033 Punica granatum HOM05D003788 ORTHO05D004633 3.1e-33 147.9 365 34.5
FAN21G2445 Fragaria x ananassa HOM05D003788 ORTHO05D004633 4.1e-33 147.5 419 33.2
Nitab4.5_0001732g0050 Nicotiana tabacum HOM05D003788 ORTHO05D004633 4.1e-33 147.5 326 35.0
Zm00001eb424700 Zea mays HOM05D003788 ORTHO05D004633 4.1e-33 147.5 366 33.3
Aqoxy4G02274 Aquilegia oxysepala HOM05D003788 ORTHO05D004633 5.3e-33 147.1 367 33.2
CsaV3_3G003820 Cucumis sativus L. HOM05D003788 ORTHO05D004633 5.3e-33 147.1 348 35.6
TWI38G0822 Tripterygium wilfordii HOM05D003788 ORTHO05D004633 9.1e-33 146.4 495 31.9
ECA240G4117 Erigeron canadensis HOM05D003788 ORTHO05D004633 1.2e-32 146.0 906 26.5
Potri.011G169100 Populus trichocarpa HOM05D003788 ORTHO05D004633 1.2e-32 146.0 435 33.8
vmacro11644 Vaccinium macrocarpon HOM05D003788 ORTHO05D004633 1.2e-32 146.0 1064 24.5
Sed0020897 Sechium edule HOM05D003788 ORTHO05D004633 2.7e-32 144.8 428 32.5
MELO3C014063.2 Cucumis melo HOM05D003788 ORTHO05D004633 3.5e-32 144.4 345 33.9
RcHm_v2.0_Chr5g0074531 Rosa chinensis HOM05D003788 ORTHO05D004633 4.5e-32 144.1 383 33.7
Nn1g07620 Nelumbo nucifera HOM05D003788 ORTHO05D004633 5.9e-32 143.7 417 32.4
Nitab4.5_0000152g0020 Nicotiana tabacum HOM05D003788 ORTHO05D004633 5.9e-32 143.7 356 35.1
Os04g0471400 Oryza sativa ssp. japonica HOM05D003788 ORTHO05D004633 5.9e-32 143.7 572 29.0
SalBow8G5584 Salvia bowleyana HOM05D003788 ORTHO05D004633 7.7e-32 143.3 359 34.3
FAN16G1134 Fragaria x ananassa HOM05D003788 ORTHO05D004633 1.7e-31 142.1 470 31.7
MSTRG.16130 Avicennia marina HOM05D003788 ORTHO05D004633 2.2e-31 141.7 359 35.1
SGA_v2.0_scaffold11G05962 Striga asiatica HOM05D003788 ORTHO05D004633 2.2e-31 141.7 774 27.5
Ah.04g166650 Amaranthus hybridus HOM05D003788 ORTHO05D004633 2.9e-31 141.4 726 27.8
Migut.M01579 Erythranthe guttata HOM05D003788 ORTHO05D004633 3.8e-31 141.0 426 31.5
Solyc07g066200.4 Solanum lycopersicum HOM05D003788 ORTHO05D004633 1.1e-30 139.4 391 33.8
Sopen07g034380 Solanum pennellii HOM05D003788 ORTHO05D004633 1.5e-30 139.0 390 33.8
MSTRG.7044 Avicennia marina HOM05D003788 ORTHO05D004633 2.5e-30 138.3 343 33.2
Lj1A901G37 Lonicera japonica HOM05D003788 ORTHO05D004633 4.2e-30 137.5 427 30.9
Oeu052883.2 Olea europaea HOM05D003788 ORTHO05D004633 5.5e-30 137.1 395 33.4
Sc03g0011790 Simmondsia chinensis HOM05D003788 ORTHO05D004633 5.5e-30 137.1 366 32.5
unitig_37.g12213 Utricularia gibba HOM05D003788 ORTHO05D004633 5.5e-30 137.1 321 33.3
HPP92_015789 Vanilla planifolia HOM05D003788 ORTHO05D004633 5.5e-30 137.1 323 32.2
HanXRQChr11g0346921 Helianthus annuus HOM05D003788 ORTHO05D004633 2.1e-29 135.2 347 33.7
Dinv19640 Davidia involucrata HOM05D003788 ORTHO05D004633 2.7e-29 134.8 459 30.7
Peaxi162Scf00232g00078 Petunia axillaris HOM05D003788 ORTHO05D004633 2.7e-29 134.8 805 25.6
PGSC0003DMG400022144 Solanum tuberosum HOM05D003788 ORTHO05D004633 3.6e-29 134.4 389 32.9
Lsat_1_v5_gn_9_88661 Lactuca sativa HOM05D003788 ORTHO05D004633 4.7e-29 134.0 779 27.2
TAR626G0610 Trochodendron aralioides HOM05D003788 ORTHO05D004633 4.7e-29 134.0 454 28.9
MBI14_g10253_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 6.1e-29 133.7 449 30.1
Actinidia31533 Actinidia chinensis HOM05D003788 ORTHO05D004633 8.0e-29 133.3 337 32.9
MBI15_g35998_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 2.3e-28 131.7 393 31.6
HPP92_022807 Vanilla planifolia HOM05D003788 ORTHO05D004633 6.8e-28 130.2 366 31.7
SGA_v2.0_scaffold7G03552 Striga asiatica HOM05D003788 ORTHO05D004633 8.8e-28 129.8 721 26.4
CDE11G0275 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 1.5e-27 129.0 442 29.9
Lj8C184G1 Lonicera japonica HOM05D003788 ORTHO05D004633 2.0e-27 128.6 437 30.7
PSO782G4685 Papaver somniferum HOM05D003788 ORTHO05D004633 2.0e-27 128.6 397 30.2
TAR629G3040 Trochodendron aralioides HOM05D003788 ORTHO05D004633 2.0e-27 128.6 408 29.7
unitig_0.g982 Utricularia gibba HOM05D003788 ORTHO05D004633 2.0e-27 128.6 436 31.7
AUR62017148 Chenopodium quinoa HOM05D003788 ORTHO05D004633 3.4e-27 127.9 428 28.7
CANSAT11G0655 Cannabis sativa HOM05D003788 ORTHO05D004633 7.5e-27 126.7 436 29.8
AUR62035659 Chenopodium quinoa HOM05D003788 ORTHO05D004633 2.2e-26 125.2 454 29.1
EL10Ac4g07522 Beta vulgaris HOM05D003788 ORTHO05D004633 3.7e-26 124.4 380 30.5
unitig_46.g18528 Utricularia gibba HOM05D003788 ORTHO05D004633 1.8e-25 122.1 358 31.6
Cpa.g.sc12.61 Carica papaya HOM05D003788 ORTHO05D004633 4.1e-25 120.9 319 33.2
Oeu015274.1 Olea europaea HOM05D003788 ORTHO05D004633 9.1e-25 119.8 589 27.0
Actinidia30346 Actinidia chinensis HOM05D003788 ORTHO05D004633 2.0e-24 118.6 295 36.6
TAR627G0146 Trochodendron aralioides HOM05D003788 ORTHO05D004633 2.7e-24 118.2 437 31.1
ATR0751G208 Amborella trichopoda HOM05D003788 ORTHO05D004633 3.5e-24 117.9 331 32.0
CiPaw.12G143000 Carya illinoinensis HOM05D003788 ORTHO05D004633 5.9e-24 117.1 170 44.7
Duzib170G0482 Durio zibethinus HOM05D003788 ORTHO05D004633 1.7e-23 115.5 385 29.1
Hund23029 Selenicereus undatus HOM05D003788 ORTHO05D004633 1.0e-20 106.3 368 29.6
MSTRG.13048 Avicennia marina HOM05D003788 ORTHO05D004633 5.7e-19 100.5 164 41.5
Actinidia30347 Actinidia chinensis HOM05D003788 ORTHO05D004633 1.9e-14 85.5 286 28.3
CDE06G0258 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 1.9e-14 85.5 299 28.8
CDE05G2211 Ceratophyllum demersum HOM05D003788 ORTHO05D004633 8.9e-12 76.6 362 26.5
Aqoxy2G04009 Aquilegia oxysepala HOM05D003788 ORTHO05D010879 2.0e-11 75.5 208 31.2
HPP92_007487 Vanilla planifolia HOM05D003788 ORTHO05D004633 2.0e-11 75.5 72 51.4
TAR365G1027 Trochodendron aralioides HOM05D010496 ORTHO05D010879 2.9e-10 71.6 219 29.7
Nn1g09760 Nelumbo nucifera HOM05D003788 ORTHO05D010879 1.8e-09 68.9 353 25.8
CiPaw.01G109800 Carya illinoinensis HOM05D010496 ORTHO05D010879 3.2e-09 68.2 297 27.6
Phvul.007G007000 Phaseolus vulgaris HOM05D011141 ORTHO05D010879 1.2e-08 66.2 210 31.9
Cfa008703 Carpinus fangiana HOM05D010496 ORTHO05D010879 1.6e-08 65.9 297 28.6
Haze_11711 Corylus avellana HOM05D010496 ORTHO05D010879 1.6e-08 65.9 294 27.6
Lalb_Chr06g0164061 Lupinus albus HOM05D011141 ORTHO05D010879 2.7e-08 65.1 201 29.9
QL06p027780 Quercus lobata HOM05D010496 ORTHO05D010879 1.3e-07 62.8 234 26.9
TAR365G0164 Trochodendron aralioides HOM05D003788 ORTHO05D010879 1.3e-07 62.8 221 27.1
VMungo0720G3183 Vigna mungo HOM05D011141 ORTHO05D010879 3.0e-07 61.6 265 27.9
Duzib151G0883 Durio zibethinus HOM05D010496 ORTHO05D010879 3.9e-07 61.2 205 27.3
MBI14_g12743_MAGBIO Magnolia biondii HOM05D003788 ORTHO05D004633 1.1e-06 59.7 176 33.5
Cc05_g15750 Coffea canephora HOM05D003788 ORTHO05D004633 1.5e-06 59.3 88 43.2
Psat0s1339g0080 Pisum sativum HOM05D006994 ORTHO05D008229 1.5e-06 59.3 186 28.0
Glyma.10G293200 Glycine max HOM05D011141 ORTHO05D010879 4.3e-06 57.8 225 25.8


User provided reference genes

Program Settings