Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p13220 Brassica napus HOM05D005294 ORTHO05D006720 5.8e-264 913.7 464 100.0
BraA03t10634Z Brassica rapa HOM05D005294 ORTHO05D006720 1.7e-260 902.1 464 98.1
BolC3t13987H Brassica oleracea HOM05D005294 ORTHO05D006720 3.1e-257 891.3 464 96.8
C03p15490 Brassica napus HOM05D005294 ORTHO05D006720 3.8e-255 884.4 464 95.9
BcaC01g06444 Brassica carinata HOM05D005294 ORTHO05D006720 2.4e-254 881.7 464 96.1
BcaB01g04417 Brassica carinata HOM05D005294 ORTHO05D006720 4.3e-251 870.9 463 94.8
BcaB08g36064 Brassica carinata HOM05D005294 ORTHO05D006720 1.3e-239 832.8 463 91.1
Thhalv10013465m.g Eutrema salsugineum HOM05D005294 ORTHO05D006720 2.3e-236 822.0 462 89.6
BraA10t43499Z Brassica rapa HOM05D005294 ORTHO05D006720 9.6e-235 816.6 462 89.4
AL8G32570 Arabidopsis lyrata HOM05D005294 ORTHO05D006720 1.8e-233 812.4 462 89.0
AT5G56740 Arabidopsis thaliana HOM05D005294 ORTHO05D006720 6.9e-233 810.4 462 88.5
A10p14080 Brassica napus HOM05D005294 ORTHO05D006720 2.0e-232 808.9 462 88.7
Sp6g18490 Schrenkiella parvula HOM05D005294 ORTHO05D006720 3.4e-232 808.1 462 89.0
Carub.0008s1722 Capsella rubella HOM05D005294 ORTHO05D006720 1.0e-228 796.6 461 87.4
CARHR270490 Cardamine hirsuta HOM05D005294 ORTHO05D006720 3.0e-228 795.0 463 87.5
BcaC04g20057 Brassica carinata HOM05D005294 ORTHO05D006720 8.0e-197 690.6 447 79.4
THA.LOC104811733 Tarenaya hassleriana HOM05D005294 ORTHO05D006720 1.3e-194 683.3 468 73.5
Aa31LG3G12690 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.3e-183 646.7 464 72.0
Ciclev10008203m.g Citrus clementina HOM05D005294 ORTHO05D006720 6.2e-165 584.7 466 63.5
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 1.8e-164 583.2 706 50.0
Haze_25869 Corylus avellana HOM05D005294 ORTHO05D006720 1.2e-163 580.5 466 62.4
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 1.7e-162 576.6 706 49.7
Cpa.g.sc32.101 Carica papaya HOM05D005294 ORTHO05D006720 2.2e-162 576.2 463 63.1
COL.COLO4_18242 Corchorus olitorius HOM05D005294 ORTHO05D006720 4.6e-160 568.5 470 62.3
Atru.chr7.1522 Acer truncatum HOM05D005294 ORTHO05D006720 6.6e-159 564.7 466 60.5
CiPaw.03G219800 Carya illinoinensis HOM05D005294 ORTHO05D006720 1.8e-156 556.6 467 60.2
QL02p063470 Quercus lobata HOM05D005294 ORTHO05D006720 1.2e-155 553.9 466 58.8
Thecc.09G094300 Theobroma cacao HOM05D005294 ORTHO05D006720 5.8e-155 551.6 453 61.6
Cfa003134 Carpinus fangiana HOM05D005294 ORTHO05D006720 7.6e-155 551.2 466 60.3
Lj7C671G8 Lonicera japonica HOM05D005294 ORTHO05D006720 8.4e-154 547.7 465 58.7
MD15G1202500 Malus domestica HOM05D005294 ORTHO05D006720 8.4e-154 547.7 467 59.5
Gohir.D06G069100 Gossypium hirsutum HOM05D005294 ORTHO05D006720 1.1e-153 547.4 470 60.4
Gorai.010G080700 Gossypium raimondii HOM05D005294 ORTHO05D006720 1.1e-153 547.4 470 60.4
GSVIVG01015248001 Vitis vinifera HOM05D005294 ORTHO05D006720 1.1e-153 547.4 458 59.6
Potri.013G068200 Populus trichocarpa HOM05D005294 ORTHO05D006720 1.9e-153 546.6 465 58.9
MD02G1072700 Malus domestica HOM05D005294 ORTHO05D006720 3.2e-153 545.8 467 59.3
Gohir.A06G070500 Gossypium hirsutum HOM05D005294 ORTHO05D006720 9.2e-153 544.3 470 60.2
RcHm_v2.0_Chr2g0092581 Rosa chinensis HOM05D005294 ORTHO05D006720 1.6e-152 543.5 463 57.5
Manes.16G105100 Manihot esculenta HOM05D005294 ORTHO05D006720 2.7e-152 542.7 464 58.6
Prupe.7G214700 Prunus persica HOM05D005294 ORTHO05D006720 6.6e-151 538.1 463 57.5
Dinv36732 Davidia involucrata HOM05D005294 ORTHO05D006720 1.9e-150 536.6 466 57.5
CSS0004577 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 2.5e-150 536.2 465 57.0
Duzib168G2227 Durio zibethinus HOM05D005294 ORTHO05D006720 2.5e-150 536.2 452 60.2
CSS0007070 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 5.6e-150 535.0 465 57.0
Eucgr.C03688 Eucalyptus grandis HOM05D005294 ORTHO05D006720 4.7e-149 531.9 469 56.7
TWI34G0876 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 5.2e-148 528.5 465 57.8
TWI63G0491 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 2.0e-147 526.6 466 57.5
Sabra13G0059500 Salix brachista HOM05D005294 ORTHO05D006720 4.4e-147 525.4 516 52.3
PGR102G3363 Punica granatum HOM05D005294 ORTHO05D006720 9.9e-147 524.2 467 56.1
FvH4_1g06810 Fragaria vesca HOM05D005294 ORTHO05D006720 1.3e-146 523.9 463 56.8
arahy.Tifrunner.gnm1.ann1.T94LMP Arachis hypogaea HOM05D005294 ORTHO05D006720 2.2e-146 523.1 466 56.7
arahy.Tifrunner.gnm1.ann1.CWN4E9 Arachis hypogaea HOM05D005294 ORTHO05D006720 3.8e-146 522.3 466 56.2
Lalb_Chr18g0053011 Lupinus albus HOM05D005294 ORTHO05D006720 4.9e-146 521.9 465 56.3
Actinidia39748 Actinidia chinensis HOM05D005294 ORTHO05D006720 1.1e-145 520.8 464 54.7
CANSAT64G1758 Cannabis sativa HOM05D005294 ORTHO05D006720 1.4e-145 520.4 465 56.8
FAN26G2354 Fragaria x ananassa HOM05D005294 ORTHO05D006720 3.2e-145 519.2 468 56.0
Rhsim05G0031400 Rhododendron simsii HOM05D005294 ORTHO05D006720 3.2e-145 519.2 466 55.8
Nitab4.5_0004011g0060 Nicotiana tabacum HOM05D005294 ORTHO05D006720 5.4e-145 518.5 466 55.8
Nitab4.5_0001492g0020 Nicotiana tabacum HOM05D005294 ORTHO05D006720 2.7e-144 516.2 466 55.2
LjContig00141g0021499 Lotus japonicus HOM05D005294 ORTHO05D006720 3.5e-144 515.8 466 54.9
FAN23G1873 Fragaria x ananassa HOM05D005294 ORTHO05D006720 6.6e-143 511.5 463 55.5
vmacro10822 Vaccinium macrocarpon HOM05D005294 ORTHO05D006720 1.9e-142 510.0 497 51.5
ClCG11G001870 Citrullus lanatus HOM05D005294 ORTHO05D006720 4.3e-142 508.8 468 54.7
TAR624G1381 Trochodendron aralioides HOM05D005294 ORTHO05D006720 3.6e-141 505.8 461 55.3
Glyma.14G065800 Glycine max HOM05D005294 ORTHO05D006720 4.8e-141 505.4 466 55.2
Lalb_Chr15g0084501 Lupinus albus HOM05D005294 ORTHO05D006720 3.1e-140 502.7 469 54.6
Glyma.02G250900 Glycine max HOM05D005294 ORTHO05D006720 5.3e-140 501.9 466 54.5
CsaV3_2G001600 Cucumis sativus L. HOM05D005294 ORTHO05D006720 6.9e-140 501.5 468 54.5
DCAR_012006 Daucus carota HOM05D005294 ORTHO05D006720 3.4e-139 499.2 465 53.1
ECA234G1346 Erigeron canadensis HOM05D005294 ORTHO05D006720 4.4e-139 498.8 464 52.8
Sopen02g017740 Solanum pennellii HOM05D005294 ORTHO05D006720 5.8e-139 498.4 462 52.8
CAN.G142.7 Capsicum annuum HOM05D005294 ORTHO05D006720 7.6e-139 498.0 466 52.4
PGSC0003DMG400033362 Solanum tuberosum HOM05D005294 ORTHO05D006720 7.6e-139 498.0 466 52.1
Medtr5g080780 Medicago truncatula HOM05D005294 ORTHO05D006720 9.9e-139 497.7 460 53.9
Solyc02g068580.1 Solanum lycopersicum HOM05D005294 ORTHO05D006720 1.3e-138 497.3 462 53.0
HanXRQChr12g0355321 Helianthus annuus HOM05D005294 ORTHO05D006720 2.9e-138 496.1 461 53.1
Sc08g0008210 Simmondsia chinensis HOM05D005294 ORTHO05D006720 2.9e-138 496.1 464 53.0
Peaxi162Scf01468g00004 Petunia axillaris HOM05D005294 ORTHO05D006720 6.4e-138 495.0 461 54.7
Phvul.008G230500 Phaseolus vulgaris HOM05D005294 ORTHO05D006720 1.9e-137 493.4 466 54.3
Lsat_1_v5_gn_5_146040 Lactuca sativa HOM05D005294 ORTHO05D006720 1.2e-136 490.7 467 51.6
Sed0020374 Sechium edule HOM05D005294 ORTHO05D006720 2.7e-136 489.6 463 53.8
Hund05510 Selenicereus undatus HOM05D005294 ORTHO05D006720 1.7e-135 486.9 466 53.9
FAN19G0312 Fragaria x ananassa HOM05D005294 ORTHO05D006720 8.7e-135 484.6 434 55.1
MSTRG.19532 Avicennia marina HOM05D005294 ORTHO05D006720 1.9e-134 483.4 461 51.4
TPR.G25848 Trifolium pratense HOM05D005294 ORTHO05D006720 1.9e-134 483.4 452 53.3
FAN26G0700 Fragaria x ananassa HOM05D005294 ORTHO05D006720 3.3e-134 482.6 463 52.5
Aqoxy7G03926 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 1.6e-133 480.3 463 53.1
Psat2g038680 Pisum sativum HOM05D005294 ORTHO05D006720 8.1e-133 478.0 460 52.0
VMungo0647G0234 Vigna mungo HOM05D005294 ORTHO05D006720 1.4e-129 467.2 466 52.4
Cc06_g10960 Coffea canephora HOM05D005294 ORTHO05D006720 7.1e-129 464.9 439 51.7
PSO210G3043 Papaver somniferum HOM05D005294 ORTHO05D006720 1.8e-127 460.3 456 50.7
PSO210G1233 Papaver somniferum HOM05D005294 ORTHO05D006720 2.8e-125 453.0 458 50.2
Migut.J00438 Erythranthe guttata HOM05D005294 ORTHO05D006720 3.7e-125 452.6 454 48.7
Ah.15g091540 Amaranthus hybridus HOM05D005294 ORTHO05D006720 2.4e-124 449.9 463 50.3
AUR62008827 Chenopodium quinoa HOM05D005294 ORTHO05D006720 7.6e-123 444.9 462 50.4
SGA_v2.0_scaffold62G21576 Striga asiatica HOM05D005294 ORTHO05D006720 4.9e-122 442.2 495 46.7
AUR62025414 Chenopodium quinoa HOM05D005294 ORTHO05D006720 1.2e-120 437.6 462 49.4
EL10Ac7g17721 Beta vulgaris HOM05D005294 ORTHO05D006720 2.1e-120 436.8 424 53.8
MBI04_g06995_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 3.0e-119 433.0 463 48.8
Ca_05904_v3 Cicer arietinum L. HOM05D005294 ORTHO05D006720 2.8e-117 426.4 422 49.3
Aqoxy4G01946 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 1.0e-114 417.9 455 49.5
HPP92_009085 Vanilla planifolia HOM05D005294 ORTHO05D006720 1.0e-114 417.9 458 46.9
Zm00001eb310550 Zea mays HOM05D005294 ORTHO05D006720 1.0e-111 407.9 467 47.8
Os09g0347800 Oryza sativa ssp. japonica HOM05D005294 ORTHO05D006720 2.3e-111 406.8 467 46.7
unitig_26.g9161 Utricularia gibba HOM05D005294 ORTHO05D006720 6.7e-111 405.2 495 42.8
Haze_25870 Corylus avellana HOM05D005294 ORTHO05D006720 6.3e-109 398.7 416 51.4
Nn6g35397 Nelumbo nucifera HOM05D005294 ORTHO05D006720 1.2e-88 331.3 291 54.6
ATR0705G179 Amborella trichopoda HOM05D005294 ORTHO05D006720 1.8e-87 327.4 418 40.7
MELO3C004615.2 Cucumis melo HOM05D005294 ORTHO05D006720 8.5e-82 308.5 280 53.2
CDE09G1011 Ceratophyllum demersum HOM05D005294 ORTHO05D006720 5.2e-79 299.3 465 35.9
SEGI_34717 Sequoiadendron giganteum HOM05D005294 ORTHO05D006720 1.4e-76 291.2 489 35.2
SGA_v2.0_scaffold10G05199 Striga asiatica HOM05D005294 ORTHO05D006720 3.1e-76 290.0 526 35.9
SHI02790 Sapria himalayana HOM05D005294 ORTHO05D006720 4.7e-72 276.2 464 37.5
Mapoly0079s0005 Marchantia polymorpha HOM05D005294 ORTHO05D006720 1.8e-60 237.7 527 31.3
Oeu052126.1 Olea europaea HOM05D005294 ORTHO05D006720 1.2e-59 235.0 324 41.4
Pp3c15_19200 Physcomitrium patens HOM05D005294 ORTHO05D006720 1.0e-58 231.9 515 30.5
Aa31LG3G12580 Aethionema arabicum HOM05D005294 ORTHO05D006720 6.2e-48 196.1 126 73.8
Aa31LG3G12620 Aethionema arabicum HOM05D005294 ORTHO05D006720 6.2e-48 196.1 126 73.8
Aa31LG3G12670 Aethionema arabicum HOM05D004235 ORTHO05D005157 5.2e-47 193.0 379 36.1
Aa31sc2040G10 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.2e-46 191.8 123 74.0
CBR_g45363 Chara braunii HOM05D005294 ORTHO05D006720 4.4e-46 189.9 357 30.8
CARHR271620 Cardamine hirsuta HOM05D005294 ORTHO05D006720 2.2e-45 187.6 105 85.7
MBI14_g43979_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 8.6e-42 175.6 194 46.9
Zm00001eb171070 Zea mays HOM05D005294 ORTHO05D006720 3.3e-41 173.7 179 45.3
Zm00001eb301910 Zea mays HOM05D005294 ORTHO05D006720 1.2e-40 171.8 179 44.7
Actinidia25279 Actinidia chinensis HOM05D005294 ORTHO05D006720 3.2e-36 157.1 361 30.7
PRCOL_00004982 Prasinoderma coloniale HOM05D005294 ORTHO05D006720 1.2e-35 155.2 447 27.7
RcHm_v2.0_Chr2g0093921 Rosa chinensis HOM05D005294 ORTHO05D006720 8.9e-31 139.0 115 56.5
RcHm_v2.0_Chr2g0093931 Rosa chinensis HOM05D005294 ORTHO05D006720 4.4e-30 136.7 128 51.6
MCO15G657 Micromonas commoda HOM05D005294 ORTHO05D006720 6.0e-27 126.3 377 24.7
Cre03.g186500 Chlamydomonas reinhardtii HOM05D005294 ORTHO05D006720 7.8e-27 125.9 295 25.8
Aqoxy4G01950 Aquilegia oxysepala HOM05D002435 ORTHO05D002550 4.3e-25 120.2 217 37.3
SMO244G0078 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 8.1e-16 89.4 174 32.2
SMO281G0026 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 1.1e-15 89.0 120 35.8
Aqoxy4G01951 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 4.2e-12 77.0 72 55.6
Zm00001eb382850 Zea mays HOM05D005294 ORTHO05D006720 1.6e-11 75.1 88 37.5
SGA_v2.0_scaffold194G40752 Striga asiatica HOM05D005294 ORTHO05D006720 2.1e-11 74.7 73 49.3
Zm00001eb383990 Zea mays HOM05D005294 ORTHO05D006720 2.1e-11 74.7 106 34.0
GSVIVG01038419001 Vitis vinifera HOM05D005294 ORTHO05D008307 2.4e-07 61.2 38 68.4
GSVIVG01027373001 Vitis vinifera HOM05D005294 ORTHO05D006720 6.9e-07 59.7 39 64.1
Cc06_g10970 Coffea canephora HOM05D005294 ORTHO05D038989 1.5e-06 58.5 40 70.0


User provided reference genes

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