Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p13050 Brassica napus HOM05D003238 ORTHO05D003571 9.8e-87 323.6 177 100.0
BraA03t10615Z Brassica rapa HOM05D003238 ORTHO05D003571 1.0e-83 313.5 172 100.0
C03p15230 Brassica napus HOM05D003238 ORTHO05D003571 1.6e-68 263.1 176 85.8
BolC3t13964H Brassica oleracea HOM05D003238 ORTHO05D003571 2.0e-68 262.7 172 86.6
BcaC01g06458 Brassica carinata HOM05D003238 ORTHO05D003571 1.3e-67 260.0 174 85.6
BcaB01g04436 Brassica carinata HOM05D003238 ORTHO05D003571 2.8e-65 252.3 171 83.0
BcaNung05246 Brassica carinata HOM05D003238 ORTHO05D003571 4.7e-65 251.5 172 84.9
Sp6g18700 Schrenkiella parvula HOM05D003238 ORTHO05D003571 2.0e-63 246.1 184 79.3
Thhalv10014757m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 4.6e-60 235.0 183 76.0
BcaB08g36028 Brassica carinata HOM05D003238 ORTHO05D003571 5.6e-58 228.0 181 76.8
BcaC03g14186 Brassica carinata HOM05D003238 ORTHO05D003571 5.6e-58 228.0 178 69.7
C02p14700 Brassica napus HOM05D003238 ORTHO05D003571 5.6e-58 228.0 178 69.7
BolC2t07595H Brassica oleracea HOM05D003238 ORTHO05D003571 5.6e-58 228.0 178 69.7
BcaB05g22307 Brassica carinata HOM05D003238 ORTHO05D003571 2.1e-57 226.1 172 69.8
C09p48650 Brassica napus HOM05D003238 ORTHO05D003571 1.1e-56 223.8 172 75.6
BcaC04g20028 Brassica carinata HOM05D003238 ORTHO05D003571 1.8e-56 223.0 174 74.7
BolC9t57711H Brassica oleracea HOM05D003238 ORTHO05D003571 1.2e-55 220.3 172 74.4
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 8.3e-54 214.2 173 69.4
A02p08810 Brassica napus HOM05D003238 ORTHO05D003571 7.1e-53 211.1 177 66.1
BraA02t05948Z Brassica rapa HOM05D003238 ORTHO05D003571 7.1e-53 211.1 177 66.1
A10p14320 Brassica napus HOM05D003238 ORTHO05D003571 6.6e-51 204.5 169 72.8
CARHR270740 Cardamine hirsuta HOM05D003238 ORTHO05D003571 9.6e-50 200.7 186 68.8
Carub.0008s1748 Capsella rubella HOM05D003238 ORTHO05D003571 3.3e-42 175.6 177 62.1
THA.LOC104813494 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 3.3e-42 175.6 177 58.8
AT5G57000 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 4.8e-41 171.8 178 64.0
AL8G32890 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 2.2e-38 162.9 178 57.9
DCAR_031339 Daucus carota HOM05D003238 ORTHO05D003571 4.0e-24 115.5 162 44.4
DCAR_031341 Daucus carota HOM05D003238 ORTHO05D003571 4.0e-24 115.5 162 44.4
Migut.J00580 Erythranthe guttata HOM05D003238 ORTHO05D003571 1.2e-23 114.0 161 49.7
SGA_v2.0_scaffold10G05235 Striga asiatica HOM05D002348 ORTHO05D002512 1.2e-20 104.0 208 37.0
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 7.9e-20 101.3 183 36.1
HanXRQChr04g0126171 Helianthus annuus HOM05D003238 ORTHO05D003571 6.7e-19 98.2 125 46.4
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.1e-18 97.4 207 33.8
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 1.5e-18 97.1 177 40.1
Oeu004201.1 Olea europaea HOM05D003238 ORTHO05D003571 1.9e-18 96.7 101 52.5
TWI63G0468 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 4.3e-18 95.5 216 31.9
PGR142G0437 Punica granatum HOM05D003238 ORTHO05D003571 9.6e-18 94.4 227 39.2
ECA236G3496 Erigeron canadensis HOM05D003238 ORTHO05D003571 1.3e-17 94.0 152 40.8
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.3e-17 94.0 142 40.8
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.3e-17 94.0 207 33.8
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 1.6e-17 93.6 187 34.2
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 1.6e-17 93.6 187 34.2
Ciclev10009462m.g Citrus clementina HOM05D003238 ORTHO05D003571 1.6e-17 93.6 143 40.6
unitig_26.g9174 Utricularia gibba HOM05D003238 ORTHO05D003571 2.1e-17 93.2 131 41.2
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 6.2e-17 91.7 207 34.3
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 8.2e-17 91.3 220 30.9
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 4.1e-16 89.0 125 44.8
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 1.2e-15 87.4 225 30.7
HanXRQChr06g0178591 Helianthus annuus HOM05D003238 ORTHO05D003571 2.0e-15 86.7 133 40.6
Os09g0363700 Oryza sativa ssp. japonica HOM05D003238 ORTHO05D003571 2.0e-15 86.7 115 47.0
Lsat_1_v5_gn_8_86760 Lactuca sativa HOM05D003238 ORTHO05D003571 3.4e-15 85.9 128 39.8
Phvul.009G231100 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 4.5e-15 85.5 136 41.2
arahy.Tifrunner.gnm1.ann1.57GLQM Arachis hypogaea HOM05D003238 ORTHO05D003571 5.8e-15 85.1 129 43.4
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 7.6e-15 84.7 179 35.2
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 2.2e-14 83.2 215 35.3
CiPaw.02G138700 Carya illinoinensis HOM05D003238 ORTHO05D003571 3.8e-14 82.4 57 64.9
Sc14g0000680 Simmondsia chinensis HOM05D051806 ORTHO05D003571 6.5e-14 81.6 94 47.9
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 8.4e-14 81.3 158 32.3
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 1.4e-13 80.5 201 32.8
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 1.9e-13 80.1 77 48.1
Potri.004G095300 Populus trichocarpa HOM05D003238 ORTHO05D003571 1.9e-13 80.1 64 59.4
FvH4_1g07820 Fragaria vesca HOM05D003238 ORTHO05D003571 4.2e-13 79.0 113 44.2
FAN19G2918 Fragaria x ananassa HOM05D003238 ORTHO05D003571 4.2e-13 79.0 113 44.2
Prupe.3G046400 Prunus persica HOM05D003238 ORTHO05D003571 4.2e-13 79.0 67 61.2
vmacro17137 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 7.2e-13 78.2 161 34.8
Lalb_Chr08g0232341 Lupinus albus HOM05D003238 ORTHO05D003571 1.2e-12 77.4 128 38.3
SalBow6G6091 Salvia bowleyana HOM05D003238 ORTHO05D003571 1.2e-12 77.4 50 74.0
Sed0023757 Sechium edule HOM05D003238 ORTHO05D003571 2.7e-12 76.3 140 38.6
Potri.006G148000 Populus trichocarpa HOM05D003238 ORTHO05D003571 3.5e-12 75.9 163 31.9
GSVIVG01015179001 Vitis vinifera HOM05D003238 ORTHO05D003571 3.5e-12 75.9 140 48.6
MSTRG.4775 Avicennia marina HOM05D003238 ORTHO05D003571 4.6e-12 75.5 57 66.7
arahy.Tifrunner.gnm1.ann1.ZSY109 Arachis hypogaea HOM05D003238 ORTHO05D003571 6.1e-12 75.1 129 41.1
Psat1g140480 Pisum sativum HOM05D003238 ORTHO05D003571 6.1e-12 75.1 167 34.7
Zm00001eb310990 Zea mays HOM05D003238 ORTHO05D003571 6.1e-12 75.1 122 42.6
Ca_26161_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 1.0e-11 74.3 128 37.5
RcHm_v2.0_Chr3g0459511 Rosa chinensis HOM05D003238 ORTHO05D003571 1.0e-11 74.3 77 51.9
PGSC0003DMG400000275 Solanum tuberosum HOM05D003238 ORTHO05D003571 1.8e-11 73.6 183 32.8
Medtr2g039890 Medicago truncatula HOM05D003238 ORTHO05D003571 2.3e-11 73.2 98 43.9
TAR624G0020 Trochodendron aralioides HOM05D003238 ORTHO05D003571 2.3e-11 73.2 62 59.7
COL.COLO4_18181 Corchorus olitorius HOM05D003238 ORTHO05D003571 3.0e-11 72.8 49 69.4
Migut.D00960 Erythranthe guttata HOM05D003238 ORTHO05D003571 3.0e-11 72.8 78 44.9
ClCG05G000830 Citrullus lanatus HOM05D003238 ORTHO05D003571 3.9e-11 72.4 144 43.8
MD02G1082200 Malus domestica HOM05D003238 ORTHO05D003571 5.1e-11 72.0 147 38.1
MELO3C006025.2 Cucumis melo HOM05D003238 ORTHO05D003571 6.7e-11 71.6 148 38.5
Rhsim05G0017200 Rhododendron simsii HOM05D003238 ORTHO05D003571 8.7e-11 71.2 160 32.5
Peaxi162Scf00498g00436 Petunia axillaris HOM05D003238 ORTHO05D003571 1.5e-10 70.5 169 33.7
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 1.5e-10 70.5 177 33.3
TAR362G1092 Trochodendron aralioides HOM05D003238 ORTHO05D003571 1.5e-10 70.5 57 63.2
RcHm_v2.0_Chr2g0144001 Rosa chinensis HOM05D003238 ORTHO05D003571 1.9e-10 70.1 60 55.0
Sabra06G0117100 Salix brachista HOM05D003238 ORTHO05D003571 4.3e-10 68.9 163 29.4
Sc18g0002230 Simmondsia chinensis HOM05D003238 ORTHO05D003571 5.7e-10 68.6 102 37.3
CsaV3_3G008070 Cucumis sativus L. HOM05D003238 ORTHO05D003571 7.4e-10 68.2 152 40.1
FAN14G3690 Fragaria x ananassa HOM05D003238 ORTHO05D003571 7.4e-10 68.2 63 50.8
QL02p062228 Quercus lobata HOM05D003238 ORTHO05D003571 7.4e-10 68.2 214 28.5
FvH4_6g33970 Fragaria vesca HOM05D003238 ORTHO05D003571 1.6e-09 67.0 63 50.8
FAN09G2388 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.6e-09 67.0 63 50.8
MD09G1190500 Malus domestica HOM05D003238 ORTHO05D003571 1.6e-09 67.0 48 62.5
TAR375G0996 Trochodendron aralioides HOM05D003238 ORTHO05D003571 1.6e-09 67.0 62 54.8
Sopen12g003880 Solanum pennellii HOM05D003238 ORTHO05D003571 2.2e-09 66.6 52 63.5
HPP92_006473 Vanilla planifolia HOM05D003238 ORTHO05D003571 2.8e-09 66.2 46 67.4
CANSAT56G2721 Cannabis sativa HOM05D003238 ORTHO05D003571 3.7e-09 65.9 54 63.0
FAN05G5076 Fragaria x ananassa HOM05D003238 ORTHO05D003571 3.7e-09 65.9 63 49.2
Carub.0002s1954 Capsella rubella HOM05D003238 ORTHO05D003571 6.3e-09 65.1 50 58.0
Aa31LG3G12880 Aethionema arabicum HOM05D003238 ORTHO05D003571 8.2e-09 64.7 52 61.5
Glyma.15G170900 Glycine max HOM05D003238 ORTHO05D003571 1.1e-08 64.3 55 58.2
Prupe.7G206700 Prunus persica HOM05D003238 ORTHO05D003571 1.1e-08 64.3 77 49.4
TPR.G13426 Trifolium pratense HOM05D003238 ORTHO05D003571 2.4e-08 63.2 45 66.7
Aqoxy7G04029 Aquilegia oxysepala HOM05D003238 ORTHO05D003571 9.0e-08 61.2 152 29.6
Thhalv10019375m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 9.0e-08 61.2 44 63.6
Sed0010916 Sechium edule HOM05D003238 ORTHO05D003571 2.6e-07 59.7 55 58.2
CiPaw.01G223100 Carya illinoinensis HOM05D003238 ORTHO05D003571 3.4e-07 59.3 127 32.3
Nn6g35523 Nelumbo nucifera HOM05D003238 ORTHO05D003571 3.4e-07 59.3 141 31.9
A09p28910 Brassica napus HOM05D003238 ORTHO05D003571 4.5e-07 58.9 123 34.1
BraA09t38454Z Brassica rapa HOM05D003238 ORTHO05D003571 4.5e-07 58.9 123 34.1
Lj6g0026431 Lotus japonicus HOM05D003238 ORTHO05D003571 4.5e-07 58.9 118 35.6
Sp1g15630 Schrenkiella parvula HOM05D003238 ORTHO05D003571 5.9e-07 58.5 50 56.0
Lsat_1_v5_gn_1_35700 Lactuca sativa HOM05D003238 ORTHO05D003571 7.7e-07 58.2 51 60.8
Lsat_1_v5_gn_5_142981 Lactuca sativa HOM05D003238 ORTHO05D003571 7.7e-07 58.2 95 37.9
Phvul.010G137200 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 7.7e-07 58.2 127 33.9
Sabra04G0064600 Salix brachista HOM05D003238 ORTHO05D003571 7.7e-07 58.2 64 48.4
Haze_15983 Corylus avellana HOM05D003238 ORTHO05D003571 1.0e-06 57.8 119 32.8
BcaNung05566 Brassica carinata HOM05D003238 ORTHO05D003571 1.3e-06 57.4 60 46.7
C05p15920 Brassica napus HOM05D003238 ORTHO05D003571 1.3e-06 57.4 60 46.7
BolC5t30295H Brassica oleracea HOM05D003238 ORTHO05D003571 1.3e-06 57.4 60 46.7
AUR62009849 Chenopodium quinoa HOM05D003238 ORTHO05D003571 1.3e-06 57.4 62 50.0
Glyma.07G008200 Glycine max HOM05D003238 ORTHO05D003571 1.3e-06 57.4 130 33.8
Hma1.2p1_0169F.1_g074900 Hydrangea macrophylla HOM05D003238 ORTHO05D003571 1.3e-06 57.4 163 30.1
HPP92_006471 Vanilla planifolia HOM05D003238 ORTHO05D003571 1.3e-06 57.4 44 68.2
Cc00_g10140 Coffea canephora HOM05D001135 ORTHO05D001005 1.7e-06 57.0 100 40.0
Gohir.A10G058000 Gossypium hirsutum HOM05D003238 ORTHO05D003571 1.7e-06 57.0 118 33.9
HanXRQChr02g0031751 Helianthus annuus HOM05D003238 ORTHO05D003571 2.2e-06 56.6 50 56.0
Aa31LG7G2200 Aethionema arabicum HOM05D003238 ORTHO05D003571 2.9e-06 56.2 50 54.0
BcaNung05568 Brassica carinata HOM05D003238 ORTHO05D003571 2.9e-06 56.2 60 46.7
A06p13430 Brassica napus HOM05D003238 ORTHO05D003571 2.9e-06 56.2 60 46.7
BraA06t24495Z Brassica rapa HOM05D003238 ORTHO05D003571 2.9e-06 56.2 60 46.7
Haze_25933 Corylus avellana HOM05D003238 ORTHO05D003571 2.9e-06 56.2 139 26.6
SalBow7G1866 Salvia bowleyana HOM05D003238 ORTHO05D003571 2.9e-06 56.2 53 52.8
Thecc.09G086100 Theobroma cacao HOM05D003238 ORTHO05D003571 2.9e-06 56.2 99 34.3
AL1G29780 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 3.8e-06 55.8 50 56.0
Dinv37898 Davidia involucrata HOM05D003238 ORTHO05D003571 3.8e-06 55.8 119 31.9
BcaB03g15008 Brassica carinata HOM05D003238 ORTHO05D003571 6.5e-06 55.1 46 54.3
CARHR018090 Cardamine hirsuta HOM05D003238 ORTHO05D003571 6.5e-06 55.1 50 52.0
Gohir.D10G059800 Gossypium hirsutum HOM05D003238 ORTHO05D003571 6.5e-06 55.1 118 33.1
Gorai.011G063800 Gossypium raimondii HOM05D003238 ORTHO05D003571 6.5e-06 55.1 118 33.1
COL.COLO4_30681 Corchorus olitorius HOM05D003238 ORTHO05D003571 8.5e-06 54.7 119 31.9


User provided reference genes

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