Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p12820 Brassica napus HOM05D005586 ORTHO05D007044 0.0e+00 1180.2 642 100.0
BraA03t10590Z Brassica rapa HOM05D005586 ORTHO05D007044 0.0e+00 1174.8 642 99.7
BolC3t13940H Brassica oleracea HOM05D005586 ORTHO05D007044 0.0e+00 1171.0 643 99.4
C03p14980 Brassica napus HOM05D005586 ORTHO05D007044 0.0e+00 1167.1 644 98.8
BcaC01g06487 Brassica carinata HOM05D005586 ORTHO05D007044 0.0e+00 1165.6 642 98.9
BcaB01g04458 Brassica carinata HOM05D005586 ORTHO05D007044 0.0e+00 1140.2 644 96.0
AL8G33420 Arabidopsis lyrata HOM05D005586 ORTHO05D007044 0.0e+00 1120.9 643 93.2
AT5G57460 Arabidopsis thaliana HOM05D005586 ORTHO05D007044 0.0e+00 1119.0 647 92.4
Carub.0008s1797 Capsella rubella HOM05D005586 ORTHO05D007044 0.0e+00 1108.2 645 92.7
CARHR271250 Cardamine hirsuta HOM05D005586 ORTHO05D007044 0.0e+00 1104.4 650 91.1
Aa31LG3G13340 Aethionema arabicum HOM05D005586 ORTHO05D007044 0.0e+00 1095.1 642 87.2
BcaB08g36100 Brassica carinata HOM05D005586 ORTHO05D007044 0.0e+00 1095.1 644 89.6
C09p49310 Brassica napus HOM05D005586 ORTHO05D007044 0.0e+00 1091.3 646 91.0
BcaC04g19966 Brassica carinata HOM05D005586 ORTHO05D007044 0.0e+00 1088.9 648 90.9
Sp6g19170 Schrenkiella parvula HOM05D005586 ORTHO05D007044 0.0e+00 1077.8 644 91.3
A10p14890 Brassica napus HOM05D005586 ORTHO05D007044 0.0e+00 1077.0 645 89.5
Thhalv10015707m.g Eutrema salsugineum HOM05D005586 ORTHO05D007044 0.0e+00 1075.5 642 90.5
BraA10t43568Z Brassica rapa HOM05D005586 ORTHO05D007044 4.4e-312 1074.3 645 87.4
BolC9t57782H Brassica oleracea HOM05D005586 ORTHO05D007044 2.4e-308 1061.6 646 89.5
Aa31LG3G220 Aethionema arabicum HOM05D005586 ORTHO05D007044 2.1e-296 1021.9 645 81.2
THA.LOC104811789 Tarenaya hassleriana HOM05D005586 ORTHO05D007044 2.3e-295 1018.5 645 82.8
COL.COLO4_33680 Corchorus olitorius HOM05D005586 ORTHO05D007044 1.5e-262 909.4 653 72.9
Duzib168G0896 Durio zibethinus HOM05D005586 ORTHO05D007044 1.6e-259 899.4 652 71.8
TWI60G0698 Tripterygium wilfordii HOM05D005586 ORTHO05D007044 3.5e-259 898.3 656 72.0
Ciclev10007551m.g Citrus clementina HOM05D005586 ORTHO05D007044 1.7e-258 896.0 650 71.7
Cpa.g.sc95.50 Carica papaya HOM05D005586 ORTHO05D007044 5.0e-258 894.4 630 76.3
Prupe.2G007900 Prunus persica HOM05D005586 ORTHO05D007044 3.3e-257 891.7 656 71.8
Gohir.A08G084500 Gossypium hirsutum HOM05D005586 ORTHO05D007044 2.1e-256 889.0 651 72.4
Atru.chr7.639 Acer truncatum HOM05D005586 ORTHO05D007044 2.8e-256 888.6 659 70.9
Ca_21173_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 3.6e-256 888.3 652 70.7
Ca_21222_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 3.6e-256 888.3 652 70.7
Gorai.004G099900 Gossypium raimondii HOM05D005586 ORTHO05D007044 8.0e-256 887.1 651 72.5
CANSAT11G2700 Cannabis sativa HOM05D005586 ORTHO05D007044 2.3e-255 885.6 653 70.0
MELO3C017465.2 Cucumis melo HOM05D005586 ORTHO05D007044 1.5e-254 882.9 656 70.9
ClCG06G013320 Citrullus lanatus HOM05D005586 ORTHO05D007044 2.0e-254 882.5 656 70.7
Lalb_Chr12g0199381 Lupinus albus HOM05D005586 ORTHO05D007044 2.2e-253 879.0 654 70.2
Sed0005590 Sechium edule HOM05D005586 ORTHO05D007044 6.4e-253 877.5 655 71.0
arahy.Tifrunner.gnm1.ann1.F5X18S Arachis hypogaea HOM05D005586 ORTHO05D007044 1.1e-252 876.7 654 69.6
Medtr4g128210 Medicago truncatula HOM05D005586 ORTHO05D007044 1.9e-252 875.9 651 69.6
Potri.006G168200 Populus trichocarpa HOM05D005586 ORTHO05D007044 3.2e-252 875.2 659 71.5
CsaV3_1G031580 Cucumis sativus L. HOM05D005586 ORTHO05D007044 7.0e-252 874.0 657 70.2
Psat0s509g0200 Pisum sativum HOM05D005586 ORTHO05D007044 9.2e-252 873.6 653 69.7
Sed0016049 Sechium edule HOM05D005586 ORTHO05D007044 9.2e-252 873.6 656 70.4
Lj4g0013239 Lotus japonicus HOM05D005586 ORTHO05D007044 2.0e-251 872.5 650 68.8
Sabra06G0129800 Salix brachista HOM05D005586 ORTHO05D007044 2.7e-251 872.1 658 70.8
Thecc.09G173100 Theobroma cacao HOM05D005586 ORTHO05D007044 3.0e-250 868.6 631 72.6
RcHm_v2.0_Chr4g0402481 Rosa chinensis HOM05D005586 ORTHO05D007044 3.9e-250 868.2 647 70.3
QL02p097708 Quercus lobata HOM05D005586 ORTHO05D007044 5.0e-250 867.8 650 71.1
Glyma.20G083600 Glycine max HOM05D005586 ORTHO05D007044 2.5e-249 865.5 651 69.7
Glyma.17G063500 Glycine max HOM05D005586 ORTHO05D007044 4.3e-249 864.8 651 69.4
FAN08G2362 Fragaria x ananassa HOM05D005586 ORTHO05D007044 4.7e-248 861.3 650 69.7
CiPaw.07G192200 Carya illinoinensis HOM05D005586 ORTHO05D007044 6.2e-248 860.9 654 70.9
FAN18G4074 Fragaria x ananassa HOM05D005586 ORTHO05D007044 8.1e-248 860.5 650 69.4
FvH4_5g27790 Fragaria vesca HOM05D005586 ORTHO05D007044 1.8e-247 859.4 650 69.2
Eucgr.C02307 Eucalyptus grandis HOM05D005586 ORTHO05D007044 2.3e-247 859.0 661 70.0
Dinv41251 Davidia involucrata HOM05D005586 ORTHO05D007044 3.1e-247 858.6 644 70.3
Phvul.003G146100 Phaseolus vulgaris HOM05D005586 ORTHO05D007044 2.6e-246 855.5 649 69.5
PGR102G3328 Punica granatum HOM05D005586 ORTHO05D007044 3.4e-246 855.1 652 69.0
Haze_22099 Corylus avellana HOM05D005586 ORTHO05D007044 1.2e-243 846.7 656 67.8
Cfa013507 Carpinus fangiana HOM05D005586 ORTHO05D007044 6.0e-243 844.3 658 66.9
MD13G1254800 Malus domestica HOM05D005586 ORTHO05D007044 6.0e-243 844.3 646 69.8
BcaC01g06491 Brassica carinata HOM05D005586 ORTHO05D007044 7.8e-243 844.0 632 74.5
Lj9P685T24 Lonicera japonica HOM05D005586 ORTHO05D007044 7.8e-243 844.0 652 67.6
Manes.14G153700 Manihot esculenta HOM05D005586 ORTHO05D007044 5.1e-242 841.3 641 69.9
VMungo1215G0758 Vigna mungo HOM05D005586 ORTHO05D007044 2.5e-241 839.0 635 69.8
DCAR_017968 Daucus carota HOM05D005586 ORTHO05D007044 3.3e-241 838.6 648 68.7
Aqoxy7G02326 Aquilegia oxysepala HOM05D005586 ORTHO05D007044 1.1e-239 833.6 655 67.2
Dinv25464 Davidia involucrata HOM05D005586 ORTHO05D007044 1.1e-239 833.6 644 68.6
CSS0030464 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 3.4e-238 828.6 651 68.2
Cc06_g13260 Coffea canephora HOM05D005586 ORTHO05D007044 7.6e-238 827.4 653 67.4
TAR383G0761 Trochodendron aralioides HOM05D005586 ORTHO05D007044 1.7e-237 826.2 656 67.5
TAR626G0800 Trochodendron aralioides HOM05D005586 ORTHO05D007044 1.7e-237 826.2 654 67.3
TPR.G5407 Trifolium pratense HOM05D005586 ORTHO05D007044 2.2e-237 825.9 577 73.1
MSTRG.6212 Avicennia marina HOM05D005586 ORTHO05D007044 3.2e-236 822.0 653 66.5
Rhsim07G0149700 Rhododendron simsii HOM05D005586 ORTHO05D007044 3.5e-235 818.5 644 67.2
Ah.14g083790 Amaranthus hybridus HOM05D005586 ORTHO05D007044 7.8e-235 817.4 654 67.6
Sc08g0005320 Simmondsia chinensis HOM05D005586 ORTHO05D007044 9.6e-233 810.4 653 66.6
ECA234G4574 Erigeron canadensis HOM05D005586 ORTHO05D007044 2.8e-232 808.9 652 66.6
Gohir.D08G094100 Gossypium hirsutum HOM05D005586 ORTHO05D007044 2.8e-232 808.9 651 67.9
Peaxi162Scf00231g00064 Petunia axillaris HOM05D005586 ORTHO05D007044 4.7e-232 808.1 655 65.2
PSO170G6484 Papaver somniferum HOM05D005586 ORTHO05D007044 1.1e-231 807.0 656 65.9
CSS0000496 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 1.8e-231 806.2 651 67.0
Oeu025223.1 Olea europaea HOM05D005586 ORTHO05D007044 1.8e-231 806.2 648 65.0
Oeu009835.1 Olea europaea HOM05D005586 ORTHO05D007044 4.0e-231 805.1 647 64.9
Nitab4.5_0000730g0080 Nicotiana tabacum HOM05D005586 ORTHO05D007044 5.2e-231 804.7 656 65.9
SHI41749 Sapria himalayana HOM05D005586 ORTHO05D007044 3.4e-230 802.0 658 65.3
Lj7P472T26 Lonicera japonica HOM05D005586 ORTHO05D007044 4.4e-230 801.6 653 65.1
Solyc10g078790.1 Solanum lycopersicum HOM05D005586 ORTHO05D007044 4.4e-230 801.6 654 65.1
EL10Ac8g18286 Beta vulgaris HOM05D005586 ORTHO05D007044 7.6e-230 800.8 659 68.1
Hma1.2p1_1025F.1_g249260 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 7.6e-230 800.8 576 72.0
PGSC0003DMG400011415 Solanum tuberosum HOM05D005586 ORTHO05D007044 9.9e-230 800.4 654 65.1
Sopen10g029410 Solanum pennellii HOM05D005586 ORTHO05D007044 1.3e-229 800.0 654 65.0
PSO063G4043 Papaver somniferum HOM05D005586 ORTHO05D007044 2.9e-229 798.9 656 65.2
Nn4g25000 Nelumbo nucifera HOM05D005586 ORTHO05D007044 1.1e-228 797.0 635 67.2
SGA_v2.0_scaffold17G07909 Striga asiatica HOM05D005586 ORTHO05D007044 1.4e-228 796.6 645 66.0
Migut.J01477 Erythranthe guttata HOM05D005586 ORTHO05D007044 2.3e-226 789.3 653 63.4
Lsat_1_v5_gn_5_84680 Lactuca sativa HOM05D005586 ORTHO05D007044 3.9e-226 788.5 655 64.3
CAN.G1161.32 Capsicum annuum HOM05D005586 ORTHO05D007044 5.1e-226 788.1 657 64.4
Nitab4.5_0004134g0010 Nicotiana tabacum HOM05D005586 ORTHO05D007044 5.6e-225 784.6 649 65.6
Nitab4.5_0000455g0040 Nicotiana tabacum HOM05D005586 ORTHO05D007044 1.6e-224 783.1 645 65.9
MBI03_g13495_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 2.2e-221 772.7 658 63.7
GSVIVG01029208001 Vitis vinifera HOM05D005586 ORTHO05D007044 4.9e-221 771.5 646 64.2
MD13G1254300 Malus domestica HOM05D005586 ORTHO05D007044 4.6e-211 738.4 643 63.9
AUR62021301 Chenopodium quinoa HOM05D005586 ORTHO05D007044 7.9e-211 737.6 654 61.9
AUR62033219 Chenopodium quinoa HOM05D005586 ORTHO05D007044 7.9e-211 737.6 654 61.9
CDE04G2484 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 1.8e-210 736.5 652 61.7
MBI14_g17367_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 1.1e-209 733.8 650 60.5
BcaC01g06494 Brassica carinata HOM05D005586 ORTHO05D007044 3.3e-209 732.3 624 72.1
PSO541G5977 Papaver somniferum HOM05D005586 ORTHO05D007044 4.3e-209 731.9 660 61.4
ATR0618G120 Amborella trichopoda HOM05D005586 ORTHO05D007044 4.5e-198 695.3 653 57.9
SalBow6G0691 Salvia bowleyana HOM05D005586 ORTHO05D007044 1.9e-196 689.9 646 58.0
SalBow1G5715 Salvia bowleyana HOM05D005586 ORTHO05D007044 2.5e-193 679.5 653 57.6
Actinidia15717 Actinidia chinensis HOM05D005586 ORTHO05D007044 2.5e-188 662.9 634 59.3
SEGI_38070 Sequoiadendron giganteum HOM05D005586 ORTHO05D007044 6.1e-187 658.3 658 55.2
Os08g0243900 Oryza sativa ssp. japonica HOM05D005586 ORTHO05D007044 2.6e-182 642.9 652 56.7
Actinidia14649 Actinidia chinensis HOM05D005586 ORTHO05D007044 1.7e-181 640.2 549 63.9
MBI18_g04576_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 3.6e-179 632.5 644 57.1
Zm00001eb414690 Zea mays HOM05D005586 ORTHO05D007044 1.8e-178 630.2 654 53.8
Hma1.2p1_3184F.1_g333760 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 2.2e-176 623.2 645 56.4
CDE02G2425 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 3.7e-160 569.3 657 50.7
MBI16_g35931_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 2.0e-150 537.0 551 56.1
Mapoly0111s0055 Marchantia polymorpha HOM05D005586 ORTHO05D007044 2.8e-147 526.6 678 46.8
Pp3c25_4850 Physcomitrium patens HOM05D005586 ORTHO05D007044 8.9e-138 495.0 677 43.4
AagrBONN_evm.TU.Sc2ySwM_368.670 Anthoceros agrestis HOM05D005586 ORTHO05D007044 5.6e-124 449.1 682 42.1
COL.COLO4_04392 Corchorus olitorius HOM05D005586 ORTHO05D007044 5.6e-116 422.5 349 64.2
unitig_899.g14852 Utricularia gibba HOM05D005586 ORTHO05D007044 4.9e-104 382.9 336 64.0
unitig_899.g14851 Utricularia gibba HOM05D005586 ORTHO05D007044 4.3e-92 343.2 243 68.3
SMO228G0090 Selaginella moellendorffii HOM05D005586 ORTHO05D007044 3.2e-87 327.0 383 48.0
HPP92_000781 Vanilla planifolia HOM05D005586 ORTHO05D007044 1.0e-61 242.3 296 50.3
CBR_g26159 Chara braunii HOM05D005586 ORTHO05D000002 1.7e-43 181.8 563 28.2
QL11p053068 Quercus lobata HOM05D005586 ORTHO05D007044 1.7e-40 171.8 113 75.2
MD16G1258000 Malus domestica HOM05D005586 ORTHO05D007044 3.7e-35 154.1 118 66.9
MD16G1258100 Malus domestica HOM05D005586 ORTHO05D007044 1.2e-25 122.5 113 64.6
Oeu013635.1 Olea europaea HOM05D006172 ORTHO05D005515 3.6e-14 84.3 94 52.1
CBR_g26157 Chara braunii HOM05D005586 ORTHO05D007044 2.7e-09 68.2 97 38.1
MBI16_g35933_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009834 7.8e-09 66.6 44 70.5
MBI16_g35934_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 2.8e-06 58.2 51 52.9


User provided reference genes

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