Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p12620 Brassica napus HOM05D005241 ORTHO05D005862 1.8e-212 742.3 366 100.0
BraA03t10577Z Brassica rapa HOM05D005241 ORTHO05D005862 3.4e-211 738.0 366 99.5
BolC3t13925H Brassica oleracea HOM05D005241 ORTHO05D005862 5.7e-206 720.7 366 94.8
C03p14830 Brassica napus HOM05D005241 ORTHO05D005862 1.8e-204 715.7 366 94.5
Sp6g19390 Schrenkiella parvula HOM05D005241 ORTHO05D005862 4.4e-182 641.3 320 94.1
AL8G33730 Arabidopsis lyrata HOM05D005241 ORTHO05D005862 7.0e-180 634.0 321 92.8
Thhalv10013983m.g Eutrema salsugineum HOM05D005241 ORTHO05D005862 1.0e-178 630.2 321 92.5
AT5G57700 Arabidopsis thaliana HOM05D005241 ORTHO05D005862 8.0e-176 620.5 321 90.7
CARHR271450 Cardamine hirsuta HOM05D005241 ORTHO05D005862 6.8e-175 617.5 321 91.0
Aa31LG3G13540 Aethionema arabicum HOM05D005241 ORTHO05D005862 1.8e-159 566.2 313 83.1
THA.LOC104813533 Tarenaya hassleriana HOM05D005241 ORTHO05D005862 3.1e-159 565.5 309 84.5
CiPaw.07G187700 Carya illinoinensis HOM05D005241 ORTHO05D005862 6.2e-152 541.2 309 80.6
CsaV3_1G029530 Cucumis sativus L. HOM05D005241 ORTHO05D005862 8.9e-151 537.3 307 80.5
Actinidia24021 Actinidia chinensis HOM05D005241 ORTHO05D005862 7.5e-150 534.3 309 80.3
TWI34G1734 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 1.3e-149 533.5 309 79.3
Glyma.17G067600 Glycine max HOM05D005241 ORTHO05D005862 3.7e-149 531.9 309 79.3
CSS0029475 Camellia sinensis var. sinensis HOM05D005241 ORTHO05D005862 7.1e-148 527.7 311 78.5
Atru.chr7.554 Acer truncatum HOM05D005241 ORTHO05D005862 9.2e-148 527.3 309 78.3
Lsat_1_v5_gn_8_65460 Lactuca sativa HOM05D005241 ORTHO05D005862 9.2e-148 527.3 314 78.3
Manes.06G028800 Manihot esculenta HOM05D005241 ORTHO05D005862 9.2e-148 527.3 307 79.2
Dinv41292 Davidia involucrata HOM05D005241 ORTHO05D005862 1.2e-147 526.9 309 78.6
TWI34G0564 Tripterygium wilfordii HOM05D005241 ORTHO05D005862 1.2e-147 526.9 309 78.0
Phvul.003G150000 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 4.6e-147 525.0 309 78.3
DCAR_014714 Daucus carota HOM05D005241 ORTHO05D005862 6.0e-147 524.6 312 77.9
Psat4g010840 Pisum sativum HOM05D005241 ORTHO05D005862 1.0e-146 523.9 308 78.6
Haze_22151 Corylus avellana HOM05D005241 ORTHO05D005862 2.3e-146 522.7 304 79.6
COL.COLO4_16078 Corchorus olitorius HOM05D005241 ORTHO05D005862 3.0e-146 522.3 302 80.5
SGA_v2.0_scaffold66G22503 Striga asiatica HOM05D005241 ORTHO05D005862 3.0e-146 522.3 315 75.9
HanXRQChr06g0178861 Helianthus annuus HOM05D005241 ORTHO05D005862 3.9e-146 521.9 309 79.0
Ciclev10008429m.g Citrus clementina HOM05D005241 ORTHO05D005862 1.5e-145 520.0 309 79.3
Oeu043521.1 Olea europaea HOM05D005241 ORTHO05D005862 1.5e-145 520.0 308 78.2
Duzib150G1634 Durio zibethinus HOM05D005241 ORTHO05D005862 1.9e-145 519.6 307 77.9
Potri.018G097100 Populus trichocarpa HOM05D005241 ORTHO05D005862 1.9e-145 519.6 313 76.7
Medtr4g129180 Medicago truncatula HOM05D005241 ORTHO05D005862 2.5e-145 519.2 307 78.5
ClCG06G012960 Citrullus lanatus HOM05D005241 ORTHO05D005862 4.3e-145 518.5 309 77.3
Lj4g0014860 Lotus japonicus HOM05D005241 ORTHO05D005862 4.3e-145 518.5 304 80.3
Gohir.D06G047501 Gossypium hirsutum HOM05D005241 ORTHO05D005862 5.6e-145 518.1 309 77.0
SalBow6G2881 Salvia bowleyana HOM05D005241 ORTHO05D005862 5.6e-145 518.1 309 77.7
Sabra18G0084300 Salix brachista HOM05D005241 ORTHO05D005862 9.5e-145 517.3 310 76.8
MD13G1261500 Malus domestica HOM05D005241 ORTHO05D005862 1.6e-144 516.5 309 77.3
TAR629G1464 Trochodendron aralioides HOM05D005241 ORTHO05D005862 1.6e-144 516.5 309 77.3
unitig_0.g567 Utricularia gibba HOM05D005241 ORTHO05D005862 1.6e-144 516.5 340 71.5
Thecc.09G163500 Theobroma cacao HOM05D005241 ORTHO05D005862 2.8e-144 515.8 307 77.5
COL.COLO4_16080 Corchorus olitorius HOM05D005241 ORTHO05D005862 3.6e-144 515.4 309 76.1
Gorai.010G053100 Gossypium raimondii HOM05D005241 ORTHO05D005862 3.6e-144 515.4 310 77.1
Nn7g37052 Nelumbo nucifera HOM05D005241 ORTHO05D005862 3.6e-144 515.4 309 76.7
Gohir.A06G047300 Gossypium hirsutum HOM05D005241 ORTHO05D005862 4.7e-144 515.0 307 76.9
Thecc.09G163700 Theobroma cacao HOM05D005241 ORTHO05D005862 6.2e-144 514.6 307 76.5
Lalb_Chr07g0180171 Lupinus albus HOM05D005241 ORTHO05D005862 8.1e-144 514.2 306 77.5
CDE10G0441 Ceratophyllum demersum HOM05D005241 ORTHO05D005862 1.4e-143 513.5 312 74.7
Sopen12g007320 Solanum pennellii HOM05D005241 ORTHO05D005862 1.4e-143 513.5 309 76.7
VMungo1215G3242 Vigna mungo HOM05D005241 ORTHO05D005862 1.4e-143 513.5 311 75.9
MSTRG.19688 Avicennia marina HOM05D005241 ORTHO05D005862 2.3e-143 512.7 309 77.0
ECA236G3445 Erigeron canadensis HOM05D005241 ORTHO05D005862 3.1e-143 512.3 314 76.1
RcHm_v2.0_Chr4g0404611 Rosa chinensis HOM05D005241 ORTHO05D005862 4.0e-143 511.9 309 76.4
Lj9A730T54 Lonicera japonica HOM05D005241 ORTHO05D005862 6.8e-143 511.1 304 77.6
QL02p096102 Quercus lobata HOM05D005241 ORTHO05D005862 6.8e-143 511.1 304 77.3
SalBow6G2671 Salvia bowleyana HOM05D005241 ORTHO05D005862 3.4e-142 508.8 304 77.3
Solyc12g014440.2 Solanum lycopersicum HOM05D005241 ORTHO05D005862 4.4e-142 508.4 309 76.1
Ca_21190_v3 Cicer arietinum L. HOM05D005241 ORTHO05D005862 5.8e-142 508.1 317 74.8
Aqoxy4G03021 Aquilegia oxysepala HOM05D005241 ORTHO05D005862 7.6e-142 507.7 314 75.5
PGR102G1178 Punica granatum HOM05D005241 ORTHO05D005862 9.9e-142 507.3 311 73.3
Dinv42767 Davidia involucrata HOM05D005241 ORTHO05D005862 1.3e-141 506.9 310 77.1
Dinv43336 Davidia involucrata HOM05D005241 ORTHO05D005862 1.3e-141 506.9 310 77.1
FvH4_4g09810 Fragaria vesca HOM05D005241 ORTHO05D005862 3.7e-141 505.4 309 76.4
FAN07G2217 Fragaria x ananassa HOM05D005241 ORTHO05D005862 3.7e-141 505.4 309 76.1
FAN12G0682 Fragaria x ananassa HOM05D005241 ORTHO05D005862 3.7e-141 505.4 309 76.4
Glyma.13G092800 Glycine max HOM05D005241 ORTHO05D005862 6.4e-141 504.6 309 76.1
FAN17G0752 Fragaria x ananassa HOM05D005241 ORTHO05D005862 8.4e-141 504.2 309 75.7
PSO135G0092 Papaver somniferum HOM05D005241 ORTHO05D005862 1.1e-140 503.8 310 74.5
Os07g0516000 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 1.4e-140 503.4 314 73.9
TPR.G5349 Trifolium pratense HOM05D005241 ORTHO05D005862 1.9e-140 503.1 309 75.7
CANSAT11G2449 Cannabis sativa HOM05D005241 ORTHO05D005862 3.2e-140 502.3 309 75.1
MBI18_g28946_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 5.4e-140 501.5 312 74.4
Medtr4g129200 Medicago truncatula HOM05D005241 ORTHO05D005862 5.4e-140 501.5 311 75.9
Gohir.A05G345818 Gossypium hirsutum HOM05D005241 ORTHO05D005862 7.1e-140 501.1 313 73.8
PSO135G0726 Papaver somniferum HOM05D005241 ORTHO05D005862 2.1e-139 499.6 310 73.5
arahy.Tifrunner.gnm1.ann1.RWXM46 Arachis hypogaea HOM05D005241 ORTHO05D005862 2.7e-139 499.2 307 76.2
Hund09015 Selenicereus undatus HOM05D005241 ORTHO05D005862 3.5e-139 498.8 310 73.5
vmacro13085 Vaccinium macrocarpon HOM05D005241 ORTHO05D005862 4.6e-139 498.4 304 74.3
PSO135G0552 Papaver somniferum HOM05D005241 ORTHO05D005862 7.8e-139 497.7 310 73.9
PSO384G1775 Papaver somniferum HOM05D005241 ORTHO05D005862 1.0e-138 497.3 310 73.2
Lalb_Chr07g0180161 Lupinus albus HOM05D005241 ORTHO05D005862 2.3e-138 496.1 309 74.1
Phvul.003G150200 Phaseolus vulgaris HOM05D005241 ORTHO05D005862 5.1e-138 495.0 309 74.1
Eucgr.C02440 Eucalyptus grandis HOM05D005241 ORTHO05D005862 6.6e-138 494.6 308 73.1
Glyma.13G092900 Glycine max HOM05D005241 ORTHO05D005862 6.6e-138 494.6 309 75.4
arahy.Tifrunner.gnm1.ann1.4YP8RP Arachis hypogaea HOM05D005241 ORTHO05D005862 1.1e-137 493.8 310 74.5
Psat4g010800 Pisum sativum HOM05D005241 ORTHO05D005862 3.3e-137 492.3 303 75.9
ATR0796G313 Amborella trichopoda HOM05D005241 ORTHO05D005862 9.6e-137 490.7 310 72.6
Gorai.012G095700 Gossypium raimondii HOM05D005241 ORTHO05D005862 1.6e-136 490.0 307 74.3
Gohir.D04G085700 Gossypium hirsutum HOM05D005241 ORTHO05D005862 2.1e-136 489.6 307 73.9
AUR62040288 Chenopodium quinoa HOM05D005241 ORTHO05D005862 2.8e-136 489.2 302 75.5
PSO384G2580 Papaver somniferum HOM05D005241 ORTHO05D005862 1.8e-135 486.5 310 71.9
Rhsim01G0009500 Rhododendron simsii HOM05D005241 ORTHO05D005862 5.2e-135 485.0 304 74.0
Cc06_g13790 Coffea canephora HOM05D005241 ORTHO05D005862 8.9e-135 484.2 305 75.4
SEGI_10163 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 1.5e-134 483.4 311 73.0
EL10Ac8g18255 Beta vulgaris HOM05D005241 ORTHO05D005862 2.9e-133 479.2 309 72.8
Lj4g0023001 Lotus japonicus HOM05D005241 ORTHO05D005862 3.8e-133 478.8 320 72.5
HPP92_013485 Vanilla planifolia HOM05D005241 ORTHO05D005862 1.4e-132 476.9 310 71.9
Os07g0516050 Oryza sativa ssp. japonica HOM05D005241 ORTHO05D005862 3.2e-132 475.7 312 69.2
Peaxi162Scf00078g00547 Petunia axillaris HOM05D005241 ORTHO05D005862 3.6e-128 462.2 304 72.7
SMO351G0057 Selaginella moellendorffii HOM05D005241 ORTHO05D005862 3.5e-123 445.7 305 67.2
Nitab4.5_0000168g0090 Nicotiana tabacum HOM05D005241 ORTHO05D005862 8.1e-120 434.5 309 68.0
Sc08g0005390 Simmondsia chinensis HOM05D005241 ORTHO05D005862 9.0e-119 431.0 317 66.6
HPP92_026039 Vanilla planifolia HOM05D005241 ORTHO05D005862 1.5e-118 430.3 310 66.8
Nitab4.5_0006743g0030 Nicotiana tabacum HOM05D005241 ORTHO05D005862 4.5e-118 428.7 310 68.1
Zm00001eb105960 Zea mays HOM05D005241 ORTHO05D005862 4.5e-118 428.7 279 70.6
Pp3c3_37310 Physcomitrium patens HOM05D005241 ORTHO05D005862 3.2e-116 422.5 305 63.6
Zm00001eb105910 Zea mays HOM05D005241 ORTHO05D005862 2.1e-115 419.9 291 66.3
Mapoly0080s0044 Marchantia polymorpha HOM05D005241 ORTHO05D005862 3.5e-115 419.1 316 61.7
Hma1.2p1_0921F.1_g236680 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 6.7e-114 414.8 329 63.5
Hma1.2p1_2604F.1_g325280 Hydrangea macrophylla HOM05D005241 ORTHO05D005862 6.7e-114 414.8 329 63.5
Peaxi162Scf00339g00098 Petunia axillaris HOM05D005241 ORTHO05D005862 8.7e-114 414.5 304 67.4
AUR62039979 Chenopodium quinoa HOM05D005241 ORTHO05D005862 9.6e-113 411.0 309 59.5
PGSC0003DMG400012851 Solanum tuberosum HOM05D005241 ORTHO05D005862 2.8e-112 409.5 304 65.5
EL10Ac8g18254 Beta vulgaris HOM05D005241 ORTHO05D005862 1.1e-111 407.5 312 59.0
Carub.0008s1821 Capsella rubella HOM05D005241 ORTHO05D005862 1.3e-109 400.6 204 90.7
Sed0027242 Sechium edule HOM05D005241 ORTHO05D005862 2.5e-108 396.4 231 77.5
FAN22G1361 Fragaria x ananassa HOM05D005241 ORTHO05D005862 3.0e-106 389.4 438 49.3
Hund26388 Selenicereus undatus HOM05D005241 ORTHO05D005862 4.1e-103 379.0 313 57.5
Migut.J01437 Erythranthe guttata HOM05D005241 ORTHO05D005862 7.4e-97 358.2 209 78.5
MELO3C029512.2 Cucumis melo HOM05D005241 ORTHO05D005862 5.3e-95 352.1 251 67.7
Cpa.g.sc450.6 Carica papaya HOM05D005241 ORTHO05D005862 4.6e-91 339.0 206 75.2
SEGI_04095 Sequoiadendron giganteum HOM05D005241 ORTHO05D005862 3.9e-90 335.9 215 72.6
TPR.G40451 Trifolium pratense HOM05D005241 ORTHO05D005862 6.3e-80 302.0 176 77.3
Prupe.1G095300 Prunus persica HOM05D005241 ORTHO05D005862 5.9e-78 295.4 165 81.2
TPR.G5299 Trifolium pratense HOM05D005241 ORTHO05D005862 5.9e-78 295.4 182 74.2
EL10Ac9g22414 Beta vulgaris HOM05D005241 ORTHO05D005862 1.0e-74 284.6 309 46.0
Nitab4.5_0000692g0020 Nicotiana tabacum HOM05D005241 ORTHO05D005862 2.0e-65 253.8 304 49.0
EL10Ac7g17876 Beta vulgaris HOM05D005241 ORTHO05D005862 4.6e-46 189.5 208 45.7
MELO3C017513.2 Cucumis melo HOM05D005241 ORTHO05D005862 9.2e-39 165.2 97 75.3
MBI18_g46216_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 2.8e-35 153.7 99 71.7
Glyma.17G067650 Glycine max HOM05D005241 ORTHO05D005862 8.1e-35 152.1 87 75.9
Hund09002 Selenicereus undatus HOM05D000185 ORTHO05D000105 3.2e-31 140.2 97 66.0
Sc08g0005370 Simmondsia chinensis HOM05D005241 ORTHO05D005862 1.2e-27 128.3 80 76.2
Nn8g41235 Nelumbo nucifera HOM05D005241 ORTHO05D005862 3.1e-26 123.6 76 71.1
AagrBONN_evm.TU.Sc2ySwM_228.5641 Anthoceros agrestis HOM05D005241 ORTHO05D005862 5.2e-26 122.9 311 29.6
FAN12G2859 Fragaria x ananassa HOM05D005241 ORTHO05D005862 1.7e-24 117.9 69 76.8
MBI18_g29570_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 2.1e-22 110.9 91 58.2
SHI03002 Sapria himalayana HOM05D005241 ORTHO05D005862 2.7e-22 110.5 311 29.6
Peaxi162Scf00014g00192 Petunia axillaris HOM05D005241 ORTHO05D005862 4.4e-17 93.2 62 72.6
CBR_g30241 Chara braunii HOM05D005241 ORTHO05D005862 1.3e-13 81.6 306 26.5
CBR_g30152 Chara braunii HOM05D010403 ORTHO05D005862 3.0e-13 80.5 181 29.8
Peaxi162Scf00013g00004 Petunia axillaris HOM05D000090 ORTHO05D001322 7.6e-09 65.9 40 67.5
MBI19_g36862_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 2.2e-08 64.3 48 58.3
MBI18_g11928_MAGBIO Magnolia biondii HOM05D005241 ORTHO05D005862 4.9e-08 63.2 54 57.4


User provided reference genes

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