Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 5.0e-120 434.5 223 100.0
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 5.0e-120 434.5 223 100.0
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 2.8e-115 418.7 228 96.1
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 8.2e-115 417.2 228 93.4
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 4.6e-110 401.4 228 90.8
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 3.1e-106 388.7 228 84.6
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 4.1e-106 388.3 228 85.1
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 2.6e-105 385.6 228 83.8
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 3.4e-105 385.2 228 83.8
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 1.0e-104 383.6 228 85.1
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 1.7e-104 382.9 228 84.2
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 2.9e-104 382.1 223 85.2
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 2.1e-102 375.9 233 82.0
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 1.0e-101 373.6 226 86.3
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 3.0e-101 372.1 225 85.3
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 1.0e-96 357.1 224 79.9
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 9.7e-92 340.5 196 85.7
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 4.5e-89 331.6 246 67.5
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 4.5e-89 331.6 223 74.4
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 3.6e-86 322.0 223 77.6
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 3.7e-83 312.0 224 71.0
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 2.1e-78 296.2 220 66.4
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 2.3e-77 292.7 212 70.3
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 3.0e-77 292.4 218 64.2
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 4.0e-77 292.0 232 62.5
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 6.8e-77 291.2 220 65.0
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 6.8e-77 291.2 218 69.3
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 1.2e-76 290.4 225 63.6
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 3.4e-76 288.9 226 62.8
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 5.7e-76 288.1 224 61.2
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 7.5e-76 287.7 221 65.6
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 7.5e-76 287.7 220 66.4
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 7.5e-76 287.7 221 65.2
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 1.3e-75 287.0 218 63.8
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 1.7e-75 286.6 221 65.2
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 2.8e-75 285.8 221 64.3
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 2.8e-75 285.8 220 65.9
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 3.7e-75 285.4 255 56.9
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 4.9e-75 285.0 221 64.7
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 1.4e-74 283.5 220 66.4
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 1.8e-74 283.1 224 64.7
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 1.8e-74 283.1 220 63.6
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 1.8e-74 283.1 220 62.7
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 1.8e-74 283.1 220 62.7
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 3.1e-74 282.3 233 60.5
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 3.1e-74 282.3 225 61.3
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 3.1e-74 282.3 223 61.0
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 4.1e-74 282.0 227 62.1
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 4.1e-74 282.0 224 64.7
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 4.1e-74 282.0 218 65.6
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 7.0e-74 281.2 225 63.1
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 2.7e-73 279.3 222 62.2
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 2.7e-73 279.3 230 60.0
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 3.5e-73 278.9 219 66.7
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 3.5e-73 278.9 224 62.9
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 3.5e-73 278.9 225 60.0
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 4.5e-73 278.5 225 64.9
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 4.5e-73 278.5 225 64.0
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 1.7e-72 276.6 229 59.8
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 2.9e-72 275.8 223 59.6
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 2.9e-72 275.8 224 62.9
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 5.0e-72 275.0 221 62.4
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 5.0e-72 275.0 220 60.9
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 1.1e-71 273.9 222 58.1
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 1.5e-71 273.5 218 61.0
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 1.9e-71 273.1 229 59.8
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 1.9e-71 273.1 232 59.1
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 1.9e-71 273.1 215 60.9
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 2.5e-71 272.7 222 60.4
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 5.6e-71 271.6 225 62.2
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 7.3e-71 271.2 225 63.1
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 7.3e-71 271.2 232 59.1
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 9.5e-71 270.8 221 62.0
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 3.6e-70 268.9 220 63.2
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 1.0e-69 267.3 225 61.8
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 1.8e-69 266.5 244 60.2
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 1.8e-69 266.5 212 63.2
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 1.8e-69 266.5 222 57.7
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 1.8e-69 266.5 224 63.8
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 2.3e-69 266.2 224 63.4
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 2.3e-69 266.2 220 62.7
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.0e-69 265.4 219 59.8
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 6.8e-69 264.6 217 59.0
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 6.8e-69 264.6 222 57.2
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 1.2e-68 263.8 221 61.1
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 1.2e-68 263.8 217 59.0
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 2.0e-68 263.1 225 62.7
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 2.0e-68 263.1 220 58.2
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 2.6e-68 262.7 227 60.4
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 2.6e-68 262.7 222 56.8
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 3.4e-68 262.3 225 57.8
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 4.4e-68 261.9 221 59.7
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 5.7e-68 261.5 231 61.0
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 7.5e-68 261.2 220 60.0
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 3.7e-67 258.8 223 59.6
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 3.7e-67 258.8 246 56.9
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 6.4e-67 258.1 227 58.6
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 6.4e-67 258.1 226 61.5
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 1.1e-66 257.3 222 59.0
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 1.4e-66 256.9 169 69.8
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 5.4e-66 255.0 246 57.3
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 9.2e-66 254.2 225 59.1
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 9.2e-66 254.2 230 56.5
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 1.2e-65 253.8 224 58.9
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 2.0e-65 253.1 225 57.3
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 3.5e-65 252.3 220 59.5
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 1.0e-64 250.8 220 59.1
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 1.7e-64 250.0 159 71.7
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 5.0e-64 248.4 227 59.0
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.5e-63 246.9 223 56.5
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 1.2e-62 243.8 223 56.1
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.2e-62 243.8 223 56.1
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.2e-62 243.8 223 56.1
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 2.3e-61 239.6 202 58.9
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 4.0e-61 238.8 220 59.5
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 8.9e-61 237.7 221 55.7
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 8.9e-61 237.7 223 55.2
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 1.5e-60 236.9 218 53.2
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 2.6e-60 236.1 267 49.1
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 2.6e-60 236.1 232 53.4
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 7.5e-60 234.6 161 67.1
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 9.8e-60 234.2 218 58.3
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 1.3e-59 233.8 230 53.0
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 1.7e-59 233.4 236 53.4
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 6.4e-59 231.5 218 51.8
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 1.1e-58 230.7 254 48.4
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 1.9e-58 229.9 271 46.9
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 1.2e-57 227.3 219 52.1
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 1.2e-57 227.3 244 52.5
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 3.9e-56 222.2 215 54.4
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 8.6e-56 221.1 191 59.7
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 1.4e-53 213.8 133 78.9
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 2.0e-52 209.9 138 69.6
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 5.8e-52 208.4 142 64.1
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 5.8e-52 208.4 266 43.2
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 6.0e-49 198.4 234 50.0
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 1.7e-48 196.8 130 70.0
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 8.6e-48 194.5 140 65.0
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 3.6e-46 189.1 130 68.5
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 1.8e-45 186.8 176 52.8
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 7.6e-44 181.4 135 60.7
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 3.8e-43 179.1 134 61.9
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 3.2e-42 176.0 151 54.3
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.6e-41 173.7 130 61.5
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 6.2e-38 161.8 122 62.3
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 7.6e-36 154.8 134 53.0
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 8.7e-32 141.4 90 67.8
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.1e-31 141.0 226 43.8
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 1.5e-31 140.6 129 57.4
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 1.8e-29 133.7 91 65.9
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 2.1e-22 110.2 119 48.7
Solyc09g005580.4 Solanum lycopersicum HOM05D004149 ORTHO05D005028 2.8e-22 109.8 96 63.5
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 1.4e-21 107.5 71 70.4
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 2.4e-21 106.7 123 40.7
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 3.4e-20 102.8 79 65.8
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 2.9e-19 99.8 223 26.5
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 1.1e-15 87.8 171 31.6
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 1.1e-15 87.8 102 40.2
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 2.1e-14 83.6 74 59.5
MCO12G475 Micromonas commoda HOM05D004149 ORTHO05D005028 2.8e-14 83.2 135 31.9
GSVIVG01030787001 Vitis vinifera HOM05D004149 ORTHO05D005028 4.8e-14 82.4 94 51.1
CBR_g34707 Chara braunii HOM05D004149 ORTHO05D005028 6.2e-14 82.0 117 35.9
GSVIVG01032328001 Vitis vinifera HOM05D004149 ORTHO05D005028 1.1e-13 81.3 91 52.7
GSVIVG01000345001 Vitis vinifera HOM05D000200 ORTHO05D011629 1.8e-13 80.5 83 56.6
MSTRG.19005 Avicennia marina HOM05D004149 ORTHO05D005028 2.4e-13 80.1 93 45.2
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 7.6e-12 75.1 73 53.4
BcaB06g29604 Brassica carinata HOM05D004149 ORTHO05D039425 4.6e-09 65.9 56 60.7
BcaB07g33953 Brassica carinata HOM05D004149 ORTHO05D095923 7.4e-07 58.5 48 62.5


User provided reference genes

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