Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p11920 Brassica napus HOM05D005457 ORTHO05D006350 0.0e+00 1084.7 540 100.0
BolC3t13849H Brassica oleracea HOM05D005457 ORTHO05D006350 2.2e-278 961.8 577 84.7
BraA03t10504Z Brassica rapa HOM05D005457 ORTHO05D006350 1.4e-277 959.1 522 92.7
BcaB01g04624 Brassica carinata HOM05D005457 ORTHO05D006350 3.6e-249 864.8 575 79.0
C03p14030 Brassica napus HOM05D012589 ORTHO05D006350 1.4e-128 464.2 337 73.3
BcaB08g36300 Brassica carinata HOM05D012589 ORTHO05D006350 2.0e-98 364.0 621 43.3
THA.LOC104799410 Tarenaya hassleriana HOM05D005457 ORTHO05D006350 1.0e-57 228.8 267 47.9
COL.COLO4_19073 Corchorus olitorius HOM05D005457 ORTHO05D006350 1.1e-53 215.3 393 37.9
Glyma.09G228800 Glycine max HOM05D005457 ORTHO05D006350 4.3e-53 213.4 174 57.5
Lj2C1073G13 Lonicera japonica HOM05D005457 ORTHO05D006350 9.7e-53 212.2 261 46.0
Haze_24232 Corylus avellana HOM05D005457 ORTHO05D006350 1.3e-52 211.8 179 57.0
Thecc.09G309000 Theobroma cacao HOM05D005457 ORTHO05D006350 1.7e-52 211.5 181 56.4
QL01p028955 Quercus lobata HOM05D005457 ORTHO05D006350 2.8e-52 210.7 179 56.4
TAR369G0749 Trochodendron aralioides HOM05D005457 ORTHO05D006350 3.7e-52 210.3 183 55.7
Zm00001eb159160 Zea mays HOM05D005457 ORTHO05D006350 3.7e-52 210.3 174 57.5
VMungo1127G1417 Vigna mungo HOM05D005457 ORTHO05D006350 4.8e-52 209.9 180 56.1
Glyma.12G007800 Glycine max HOM05D005457 ORTHO05D006350 6.3e-52 209.5 174 56.3
Gohir.D03G119400 Gossypium hirsutum HOM05D005457 ORTHO05D006350 8.2e-52 209.1 179 57.0
Gorai.003G125700 Gossypium raimondii HOM05D005457 ORTHO05D006350 8.2e-52 209.1 179 57.0
Lj3g0007084 Lotus japonicus HOM05D005457 ORTHO05D006350 8.2e-52 209.1 177 55.4
HPP92_001490 Vanilla planifolia HOM05D005457 ORTHO05D006350 8.2e-52 209.1 167 58.7
Zm00001eb358910 Zea mays HOM05D005457 ORTHO05D006350 8.2e-52 209.1 174 56.3
FvH4_3g37470 Fragaria vesca HOM05D005457 ORTHO05D006350 1.1e-51 208.8 167 60.5
FAN11G1716 Fragaria x ananassa HOM05D005457 ORTHO05D006350 1.1e-51 208.8 167 60.5
Cpa.g.sc112.89 Carica papaya HOM05D005457 ORTHO05D006350 1.4e-51 208.4 186 54.8
FAN16G3594 Fragaria x ananassa HOM05D005457 ORTHO05D006350 1.4e-51 208.4 146 65.1
MD03G1079900 Malus domestica HOM05D005457 ORTHO05D006350 1.4e-51 208.4 179 58.1
RcHm_v2.0_Chr5g0067371 Rosa chinensis HOM05D005457 ORTHO05D006350 1.4e-51 208.4 218 51.4
Atru.chr3.4038 Acer truncatum HOM05D005457 ORTHO05D006350 1.8e-51 208.0 182 55.5
MD11G1084500 Malus domestica HOM05D005457 ORTHO05D006350 1.8e-51 208.0 174 57.5
Sc12g0001060 Simmondsia chinensis HOM05D005457 ORTHO05D006350 1.8e-51 208.0 173 57.8
Ca_19579_v3 Cicer arietinum L. HOM05D005457 ORTHO05D006350 2.4e-51 207.6 179 55.9
Nn2g13569 Nelumbo nucifera HOM05D005457 ORTHO05D006350 2.4e-51 207.6 147 61.9
FAN25G1264 Fragaria x ananassa HOM05D005457 ORTHO05D006350 3.1e-51 207.2 174 58.6
Gohir.D03G119500 Gossypium hirsutum HOM05D005457 ORTHO05D006350 3.1e-51 207.2 201 53.2
Lalb_Chr01g0000381 Lupinus albus HOM05D005457 ORTHO05D006350 3.1e-51 207.2 178 55.6
Prupe.6G064800 Prunus persica HOM05D005457 ORTHO05D006350 3.1e-51 207.2 179 56.4
CsaV3_1G035890 Cucumis sativus L. HOM05D005457 ORTHO05D006350 5.3e-51 206.5 187 55.6
FAN21G0431 Fragaria x ananassa HOM05D005457 ORTHO05D006350 5.3e-51 206.5 146 64.4
Nitab4.5_0006476g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 5.3e-51 206.5 360 38.1
Aqoxy1G00759 Aquilegia oxysepala HOM05D005457 ORTHO05D006350 9.1e-51 205.7 196 51.5
Dinv34321 Davidia involucrata HOM05D005457 ORTHO05D006350 9.1e-51 205.7 179 54.7
Hma1.2p1_0543F.1_g175290 Hydrangea macrophylla HOM05D005457 ORTHO05D006350 9.1e-51 205.7 182 54.4
Gohir.A03G047700 Gossypium hirsutum HOM05D005457 ORTHO05D006350 1.2e-50 205.3 179 56.4
Sed0019872 Sechium edule HOM05D005457 ORTHO05D006350 1.2e-50 205.3 226 49.6
TAR623G1178 Trochodendron aralioides HOM05D005457 ORTHO05D006350 1.2e-50 205.3 279 42.3
GSVIVG01024823001 Vitis vinifera HOM05D005457 ORTHO05D006350 1.2e-50 205.3 179 56.4
arahy.Tifrunner.gnm1.ann1.L17SH6 Arachis hypogaea HOM05D005457 ORTHO05D006350 3.4e-50 203.8 146 62.3
arahy.Tifrunner.gnm1.ann1.U9UY67 Arachis hypogaea HOM05D005457 ORTHO05D006350 3.4e-50 203.8 146 62.3
Gorai.003G125900 Gossypium raimondii HOM05D005457 ORTHO05D006350 3.4e-50 203.8 201 52.7
Psat7g154880 Pisum sativum HOM05D005457 ORTHO05D006350 3.4e-50 203.8 174 56.3
Sabra09G0028400 Salix brachista HOM05D005457 ORTHO05D006350 3.4e-50 203.8 179 56.4
Ciclev10027683m.g Citrus clementina HOM05D005457 ORTHO05D006350 4.5e-50 203.4 182 53.8
vmacro03007 Vaccinium macrocarpon HOM05D005457 ORTHO05D006350 5.9e-50 203.0 141 63.8
PSO782G3368 Papaver somniferum HOM05D005457 ORTHO05D006350 7.7e-50 202.6 146 62.3
Phvul.011G009900 Phaseolus vulgaris HOM05D005457 ORTHO05D006350 7.7e-50 202.6 223 48.9
Dinv17076 Davidia involucrata HOM05D005457 ORTHO05D006350 1.0e-49 202.2 225 47.6
Dinv43020 Davidia involucrata HOM05D005457 ORTHO05D006350 1.0e-49 202.2 225 47.6
Dinv43077 Davidia involucrata HOM05D005457 ORTHO05D006350 1.0e-49 202.2 225 47.6
Peaxi162Scf00433g00116 Petunia axillaris HOM05D005457 ORTHO05D006350 1.0e-49 202.2 339 40.4
CSS0049881 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 2.2e-49 201.1 161 58.4
Nn2g11331 Nelumbo nucifera HOM05D005457 ORTHO05D006350 2.2e-49 201.1 186 53.2
Hund11609 Selenicereus undatus HOM05D005457 ORTHO05D006350 2.2e-49 201.1 183 55.7
TPR.G3642 Trifolium pratense HOM05D005457 ORTHO05D006350 2.2e-49 201.1 172 56.4
PSO170G6745 Papaver somniferum HOM05D005457 ORTHO05D006350 2.9e-49 200.7 187 53.5
CiPaw.13G084000 Carya illinoinensis HOM05D005457 ORTHO05D006350 3.8e-49 200.3 286 42.3
SHI05894 Sapria himalayana HOM05D005457 ORTHO05D006350 3.8e-49 200.3 140 64.3
ClCG03G001030 Citrullus lanatus HOM05D005457 ORTHO05D006350 5.0e-49 199.9 284 42.6
Manes.02G123500 Manihot esculenta HOM05D005457 ORTHO05D006350 6.5e-49 199.5 146 62.3
Lj1C143T9 Lonicera japonica HOM05D005457 ORTHO05D006350 1.4e-48 198.4 161 59.0
Nitab4.5_0000752g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 1.4e-48 198.4 356 39.0
Potri.001G247100 Populus trichocarpa HOM05D005457 ORTHO05D006350 1.9e-48 198.0 402 37.3
Medtr4g037575 Medicago truncatula HOM05D005457 ORTHO05D006350 4.2e-48 196.8 173 53.8
Ah.14g082630 Amaranthus hybridus HOM05D005457 ORTHO05D006350 5.5e-48 196.4 146 61.6
Gohir.A03G047600 Gossypium hirsutum HOM05D005457 ORTHO05D006350 1.2e-47 195.3 375 36.3
AUR62001711 Chenopodium quinoa HOM05D005457 ORTHO05D006350 4.7e-47 193.4 214 48.6
DCAR_027735 Daucus carota HOM05D005457 ORTHO05D006350 4.7e-47 193.4 225 45.3
EL10Ac7g16099 Beta vulgaris HOM05D005457 ORTHO05D006350 7.9e-47 192.6 147 59.9
Cc00_g21960 Coffea canephora HOM05D005457 ORTHO05D006350 1.0e-46 192.2 174 53.4
ATR0618G328 Amborella trichopoda HOM05D005457 ORTHO05D006350 1.4e-46 191.8 144 59.0
ECA247G2917 Erigeron canadensis HOM05D005457 ORTHO05D006350 1.4e-46 191.8 140 60.0
Lsat_1_v5_gn_9_25441 Lactuca sativa HOM05D005457 ORTHO05D006350 1.4e-46 191.8 140 60.7
SalBow2G3533 Salvia bowleyana HOM05D005457 ORTHO05D006350 5.1e-46 189.9 141 57.4
HanXRQChr08g0237081 Helianthus annuus HOM05D005457 ORTHO05D006350 6.7e-46 189.5 206 47.1
MBI14_g32924_MAGBIO Magnolia biondii HOM05D005457 ORTHO05D006350 8.8e-46 189.1 140 60.7
CAN.G1002.16 Capsicum annuum HOM05D005457 ORTHO05D006350 7.4e-45 186.0 242 43.8
Sopen09g014590 Solanum pennellii HOM05D005457 ORTHO05D006350 1.7e-44 184.9 174 52.3
Solyc09g031650.3 Solanum lycopersicum HOM05D005457 ORTHO05D006350 3.7e-44 183.7 169 53.3
DCAR_027737 Daucus carota HOM05D005457 ORTHO05D006350 2.6e-42 177.6 259 40.2
DCAR_027739 Daucus carota HOM05D005457 ORTHO05D006350 1.9e-40 171.4 387 35.7
SGA_v2.0_scaffold199G41161 Striga asiatica HOM05D005457 ORTHO05D006350 5.5e-40 169.9 165 47.9
Migut.N00905 Erythranthe guttata HOM05D005457 ORTHO05D006350 1.2e-39 168.7 141 49.6
BolC9t57981H Brassica oleracea HOM05D012589 ORTHO05D024353 9.1e-35 152.5 731 26.3
C09p51180 Brassica napus HOM05D012589 ORTHO05D024353 2.0e-34 151.4 731 25.9
Rhsim13G0075000 Rhododendron simsii HOM05D005457 ORTHO05D006350 1.5e-32 145.2 168 45.2
A10p16240 Brassica napus HOM05D012589 ORTHO05D024353 2.5e-32 144.4 713 26.2
BraA10t43705Z Brassica rapa HOM05D012589 ORTHO05D024353 2.5e-32 144.4 713 26.2
CDE09G0137 Ceratophyllum demersum HOM05D000076 ORTHO05D001377 9.4e-32 142.5 101 59.4
Actinidia25125 Actinidia chinensis HOM05D005457 ORTHO05D006350 2.0e-26 124.8 95 58.9
Oeu002456.1 Olea europaea HOM05D005457 ORTHO05D006350 3.5e-26 124.0 253 37.2
Psat5g196760 Pisum sativum HOM05D005457 ORTHO05D002728 1.9e-24 118.2 120 50.0
SEGI_21152 Sequoiadendron giganteum HOM05D005457 ORTHO05D006350 2.5e-24 117.9 134 49.3
CSS0043795 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 2.0e-21 108.2 72 63.9
CSS0046602 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 2.0e-21 108.2 72 63.9
Manes.01G166000 Manihot esculenta HOM05D005457 ORTHO05D006350 4.2e-16 90.5 335 29.6
CBR_g29779 Chara braunii HOM05D005457 ORTHO05D006350 2.8e-15 87.8 125 32.0
CBR_g44392 Chara braunii HOM05D005457 ORTHO05D006350 2.8e-15 87.8 124 32.3
CBR_g34582 Chara braunii HOM05D005457 ORTHO05D006350 6.1e-15 86.7 117 34.2
Actinidia08559 Actinidia chinensis HOM05D005457 ORTHO05D006350 1.5e-13 82.0 104 45.2
CBR_g34583 Chara braunii HOM05D005457 ORTHO05D006350 2.6e-13 81.3 116 32.8
CBR_g34581 Chara braunii HOM05D005457 ORTHO05D006350 1.4e-11 75.5 129 29.5
CBR_g49555 Chara braunii HOM05D005457 ORTHO05D006350 5.9e-10 70.1 140 25.7
BolC9t57985H Brassica oleracea HOM05D012589 ORTHO05D041873 2.3e-09 68.2 77 50.6
BcaB08g36299 Brassica carinata HOM05D012589 ORTHO05D024353 6.6e-09 66.6 154 35.1
unitig_27.g24807 Utricularia gibba HOM05D005457 ORTHO05D006350 6.6e-09 66.6 143 33.6
BcaC04g20237 Brassica carinata HOM05D012589 ORTHO05D006350 2.5e-08 64.7 81 50.6
C09p51240 Brassica napus HOM05D012589 ORTHO05D041873 1.8e-06 58.5 63 54.0
PGSC0003DMG400009632 Solanum tuberosum HOM05D005457 ORTHO05D006350 8.9e-06 56.2 43 58.1


User provided reference genes

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