Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p11910 Brassica napus HOM05D005372 ORTHO05D006593 4.1e-78 294.7 148 100.0
BraA03t10503Z Brassica rapa HOM05D005372 ORTHO05D006593 3.6e-74 281.6 149 96.0
BolC3t13848H Brassica oleracea HOM05D005372 ORTHO05D006593 3.3e-72 275.0 148 94.6
BcaB01g04621 Brassica carinata HOM05D005372 ORTHO05D006593 8.2e-71 270.4 150 93.3
C03p14010 Brassica napus HOM05D005372 ORTHO05D006593 4.5e-69 264.6 150 92.0
BraA02t05820Z Brassica rapa HOM05D005372 ORTHO05D006593 7.7e-69 263.8 153 89.5
A02p07420 Brassica napus HOM05D005372 ORTHO05D006593 5.0e-68 261.2 153 88.2
BcaC03g14063 Brassica carinata HOM05D005372 ORTHO05D006593 1.1e-67 260.0 155 87.7
C02p12980 Brassica napus HOM05D005372 ORTHO05D006593 1.1e-67 260.0 155 87.7
AL8G35370 Arabidopsis lyrata HOM05D005372 ORTHO05D006593 1.4e-65 253.1 153 86.3
BcaB05g22467 Brassica carinata HOM05D005372 ORTHO05D006593 3.9e-65 251.5 152 86.8
Sp6g20690 Schrenkiella parvula HOM05D005372 ORTHO05D006593 8.8e-65 250.4 149 86.6
AT5G58990 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 1.5e-64 249.6 151 85.4
AT5G52370 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 2.6e-64 248.8 148 86.5
Thhalv10014944m.g Eutrema salsugineum HOM05D005372 ORTHO05D006593 1.8e-62 242.7 149 81.9
BcaB08g36298 Brassica carinata HOM05D005372 ORTHO05D006593 5.9e-61 237.7 155 81.3
CARHR285220 Cardamine hirsuta HOM05D005372 ORTHO05D006593 3.8e-60 235.0 148 83.1
Carub.0008s1963 Capsella rubella HOM05D005372 ORTHO05D006593 5.5e-59 231.1 149 78.5
Aa31LG1G11690 Aethionema arabicum HOM05D005372 ORTHO05D006593 1.7e-55 219.5 136 79.4
BolC2t07410H Brassica oleracea HOM05D005372 ORTHO05D006593 8.2e-55 217.2 166 75.3
C09p51220 Brassica napus HOM05D005372 ORTHO05D006593 3.5e-53 211.8 143 77.6
THA.LOC104799412 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 1.3e-52 209.9 148 70.9
THA.LOC104810736 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 2.2e-52 209.1 133 79.7
Cpa.g.sc112.93 Carica papaya HOM05D005372 ORTHO05D006593 3.4e-48 195.3 158 63.9
CiPaw.14G062800 Carya illinoinensis HOM05D005372 ORTHO05D006593 3.7e-47 191.8 136 68.4
TWI79G0177 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 3.7e-47 191.8 158 61.4
TWI75G1302 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 2.4e-46 189.1 149 65.1
Gorai.001G114500 Gossypium raimondii HOM05D005372 ORTHO05D006593 1.7e-44 183.0 142 64.8
Duzib168G1893 Durio zibethinus HOM05D005372 ORTHO05D006593 2.3e-44 182.6 142 64.8
FvH4_3g37450 Fragaria vesca HOM05D005372 ORTHO05D006593 2.3e-44 182.6 140 65.7
Gohir.D07G106400 Gossypium hirsutum HOM05D005372 ORTHO05D006593 2.3e-44 182.6 142 64.8
Nitab4.5_0002718g0040 Nicotiana tabacum HOM05D005372 ORTHO05D006593 2.3e-44 182.6 134 66.4
Migut.K01340 Erythranthe guttata HOM05D005372 ORTHO05D006593 2.9e-44 182.2 155 63.2
PGSC0003DMG400030429 Solanum tuberosum HOM05D005372 ORTHO05D006593 3.3e-43 178.7 135 64.4
Cc01_g13660 Coffea canephora HOM05D005372 ORTHO05D006593 5.5e-43 177.9 148 62.2
FAN25G0461 Fragaria x ananassa HOM05D005372 ORTHO05D006593 7.2e-43 177.6 140 64.3
Sopen06g033010 Solanum pennellii HOM05D005372 ORTHO05D006593 7.2e-43 177.6 137 63.5
CANSAT54G2064 Cannabis sativa HOM05D005372 ORTHO05D006593 9.5e-43 177.2 148 61.5
MSTRG.14035 Avicennia marina HOM05D005372 ORTHO05D006593 1.2e-42 176.8 152 61.2
Atru.chr3.4040 Acer truncatum HOM05D005372 ORTHO05D006593 2.1e-42 176.0 161 59.6
Solyc06g076620.3 Solanum lycopersicum HOM05D005372 ORTHO05D006593 2.1e-42 176.0 134 63.4
Dinv17075 Davidia involucrata HOM05D005372 ORTHO05D006593 8.0e-42 174.1 155 59.4
Dinv43019 Davidia involucrata HOM05D005372 ORTHO05D006593 8.0e-42 174.1 155 59.4
Dinv43078 Davidia involucrata HOM05D005372 ORTHO05D006593 8.0e-42 174.1 155 59.4
Thecc.09G309200 Theobroma cacao HOM05D005372 ORTHO05D006593 1.4e-41 173.3 141 60.3
MD11G1084700 Malus domestica HOM05D005372 ORTHO05D006593 1.8e-41 172.9 161 60.2
HanXRQChr04g0109301 Helianthus annuus HOM05D005372 ORTHO05D006593 2.3e-41 172.6 121 68.6
HanXRQChr03g0083951 Helianthus annuus HOM05D005372 ORTHO05D006593 3.0e-41 172.2 123 67.5
Nn3g19715 Nelumbo nucifera HOM05D005372 ORTHO05D006593 3.0e-41 172.2 121 66.1
PGR119G2477 Punica granatum HOM05D005372 ORTHO05D006593 4.0e-41 171.8 144 63.9
PSO541G6474 Papaver somniferum HOM05D005372 ORTHO05D006593 5.2e-41 171.4 150 62.7
unitig_26.g9774 Utricularia gibba HOM05D005372 ORTHO05D006593 5.2e-41 171.4 123 69.1
Gohir.A07G102200 Gossypium hirsutum HOM05D005372 ORTHO05D006593 6.8e-41 171.0 140 62.1
Nitab4.5_0000744g0090 Nicotiana tabacum HOM05D005372 ORTHO05D006593 6.8e-41 171.0 137 62.0
Cfa011626 Carpinus fangiana HOM05D005372 ORTHO05D006593 1.2e-40 170.2 141 62.4
MD03G1080100 Malus domestica HOM05D005372 ORTHO05D006593 1.5e-40 169.9 157 61.1
FAN11G0559 Fragaria x ananassa HOM05D005372 ORTHO05D006593 2.0e-40 169.5 137 61.3
RcHm_v2.0_Chr5g0067341 Rosa chinensis HOM05D005372 ORTHO05D006593 2.0e-40 169.5 142 59.9
Oeu017419.1 Olea europaea HOM05D005372 ORTHO05D006593 2.6e-40 169.1 137 61.3
CDE07G0920 Ceratophyllum demersum HOM05D005372 ORTHO05D006593 3.4e-40 168.7 127 66.1
Sabra09G0028200 Salix brachista HOM05D005372 ORTHO05D006593 3.4e-40 168.7 156 58.3
Ciclev10029469m.g Citrus clementina HOM05D005372 ORTHO05D006593 5.7e-40 167.9 146 58.9
PSO675G4385 Papaver somniferum HOM05D005372 ORTHO05D006593 1.3e-39 166.8 148 60.1
Hund04902 Selenicereus undatus HOM05D005372 ORTHO05D006593 1.3e-39 166.8 148 60.8
Peaxi162Scf01058g00152 Petunia axillaris HOM05D005372 ORTHO05D006593 1.7e-39 166.4 151 58.3
FAN21G1258 Fragaria x ananassa HOM05D005372 ORTHO05D006593 2.8e-39 165.6 138 60.1
TAR636G0867 Trochodendron aralioides HOM05D005372 ORTHO05D006593 2.8e-39 165.6 146 60.3
Potri.001G246800 Populus trichocarpa HOM05D005372 ORTHO05D006593 3.7e-39 165.2 146 60.3
Rhsim13G0075100 Rhododendron simsii HOM05D005372 ORTHO05D006593 4.9e-39 164.9 151 58.9
Hma1.2p1_0543F.1_g175310 Hydrangea macrophylla HOM05D005372 ORTHO05D006593 8.3e-39 164.1 151 57.0
Lsat_1_v5_gn_9_25321 Lactuca sativa HOM05D005372 ORTHO05D006593 1.1e-38 163.7 95 76.8
Potri.009G040100 Populus trichocarpa HOM05D005372 ORTHO05D006593 1.1e-38 163.7 156 57.7
SGA_v2.0_scaffold35G14025 Striga asiatica HOM05D005372 ORTHO05D006593 1.1e-38 163.7 139 61.2
Phvul.011G039001 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 1.4e-38 163.3 138 58.7
FAN16G3555 Fragaria x ananassa HOM05D005372 ORTHO05D006593 1.8e-38 162.9 164 54.3
Prupe.6G065000 Prunus persica HOM05D005372 ORTHO05D006593 1.8e-38 162.9 158 58.2
SalBow4G1938 Salvia bowleyana HOM05D005372 ORTHO05D006593 2.4e-38 162.5 111 69.4
SGA_v2.0_scaffold8G04342 Striga asiatica HOM05D005372 ORTHO05D006593 5.4e-38 161.4 151 58.9
Actinidia08556 Actinidia chinensis HOM05D005372 ORTHO05D006593 7.0e-38 161.0 148 58.1
Actinidia25121 Actinidia chinensis HOM05D005372 ORTHO05D006593 9.2e-38 160.6 148 58.8
CAN.G394.95 Capsicum annuum HOM05D005372 ORTHO05D006593 9.2e-38 160.6 160 53.8
Manes.02G123700 Manihot esculenta HOM05D005372 ORTHO05D006593 1.2e-37 160.2 153 54.2
CSS0037054 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 2.7e-37 159.1 154 56.5
CSS0039141 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 2.7e-37 159.1 154 56.5
Eucgr.J01954 Eucalyptus grandis HOM05D005372 ORTHO05D006593 2.7e-37 159.1 160 54.4
TAR633G2482 Trochodendron aralioides HOM05D005372 ORTHO05D006593 4.5e-37 158.3 146 57.5
Aqoxy1G00762 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 1.0e-36 157.1 152 55.9
Lalb_Chr14g0372091 Lupinus albus HOM05D005372 ORTHO05D006593 1.0e-36 157.1 138 55.8
ECA247G0538 Erigeron canadensis HOM05D005372 ORTHO05D006593 2.9e-36 155.6 83 80.7
VMungo1127G1276 Vigna mungo HOM05D005372 ORTHO05D006593 8.6e-36 154.1 150 54.0
Lalb_Chr24g0397111 Lupinus albus HOM05D005372 ORTHO05D006593 2.5e-35 152.5 93 71.0
AUR62001715 Chenopodium quinoa HOM05D005372 ORTHO05D006593 4.3e-35 151.8 126 59.5
arahy.Tifrunner.gnm1.ann1.IGF4QT Arachis hypogaea HOM05D005372 ORTHO05D006593 5.6e-35 151.4 89 75.3
arahy.Tifrunner.gnm1.ann1.UR5XNC Arachis hypogaea HOM05D005372 ORTHO05D006593 5.6e-35 151.4 89 75.3
Aqoxy4G02649 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 7.3e-35 151.0 151 54.3
TPR.G6862 Trifolium pratense HOM05D005372 ORTHO05D006593 7.3e-35 151.0 129 57.4
Sabra16G0149900 Salix brachista HOM05D005372 ORTHO05D006593 9.5e-35 150.6 146 58.9
Ah.13g070300 Amaranthus hybridus HOM05D005372 ORTHO05D006593 1.2e-34 150.2 81 81.5
Phvul.011G206600 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 1.2e-34 150.2 141 53.9
Glyma.11G111000 Glycine max HOM05D005372 ORTHO05D006593 1.6e-34 149.8 79 79.7
Sed0010324 Sechium edule HOM05D005372 ORTHO05D006593 2.1e-34 149.4 138 54.3
ClCG02G019810 Citrullus lanatus HOM05D005372 ORTHO05D006593 2.8e-34 149.1 154 51.9
Glyma.15G033200 Glycine max HOM05D005372 ORTHO05D006593 3.6e-34 148.7 131 58.0
Psat5g285800 Pisum sativum HOM05D005372 ORTHO05D006593 6.1e-34 147.9 140 50.0
VMungo1127G1643 Vigna mungo HOM05D005372 ORTHO05D006593 6.1e-34 147.9 140 55.7
Glyma.13G341200 Glycine max HOM05D005372 ORTHO05D006593 8.0e-34 147.5 133 55.6
Medtr2g097890 Medicago truncatula HOM05D005372 ORTHO05D006593 8.0e-34 147.5 85 71.8
MBI14_g28605_MAGBIO Magnolia biondii HOM05D005372 ORTHO05D006593 1.4e-33 146.7 79 81.0
EL10Ac7g16097 Beta vulgaris HOM05D005372 ORTHO05D006593 4.0e-33 145.2 91 73.6
Lj6g0015977 Lotus japonicus HOM05D005372 ORTHO05D006593 1.2e-32 143.7 84 72.6
MELO3C025881.2 Cucumis melo HOM05D005372 ORTHO05D006593 2.6e-32 142.5 94 67.0
Lj3g0018318 Lotus japonicus HOM05D005372 ORTHO05D006593 2.6e-32 142.5 136 51.5
CsaV3_6G016530 Cucumis sativus L. HOM05D005372 ORTHO05D006593 9.8e-32 140.6 142 52.8
Dinv34320 Davidia involucrata HOM05D001226 ORTHO05D006593 1.3e-31 140.2 135 55.6
SalBow6G3269 Salvia bowleyana HOM05D005372 ORTHO05D006593 5.4e-30 134.8 131 55.0
Os02g0481000 Oryza sativa ssp. japonica HOM05D005372 ORTHO05D006593 1.9e-27 126.3 94 63.8
Zm00001eb066290 Zea mays HOM05D005372 ORTHO05D006593 5.6e-27 124.8 129 51.9
Haze_24230 Corylus avellana HOM05D005372 ORTHO05D006593 1.4e-25 120.2 113 57.5
BraA10t43707Z Brassica rapa HOM05D005372 ORTHO05D006593 1.8e-25 119.8 75 78.7
QL01p028939 Quercus lobata HOM05D005372 ORTHO05D006593 3.1e-25 119.0 113 57.5
Zm00001eb433670 Zea mays HOM05D005372 ORTHO05D006593 4.0e-25 118.6 111 52.3
Nitab4.5_0000933g0130 Nicotiana tabacum HOM05D005372 ORTHO05D006593 6.8e-25 117.9 154 43.5
Nn1g02876 Nelumbo nucifera HOM05D005372 ORTHO05D006593 8.9e-25 117.5 109 51.4
Oeu002454.1 Olea europaea HOM05D005372 ORTHO05D006593 3.4e-24 115.5 62 80.6
DCAR_028257 Daucus carota HOM05D005372 ORTHO05D006593 4.4e-24 115.2 54 87.0
ATR0618G182 Amborella trichopoda HOM05D005372 ORTHO05D006593 1.3e-23 113.6 103 56.3
Lj4P191T41 Lonicera japonica HOM05D005372 ORTHO05D006593 1.7e-23 113.2 52 90.4
SHI05895 Sapria himalayana HOM05D005372 ORTHO05D006593 1.3e-20 103.6 141 43.3
Sc06g0008390 Simmondsia chinensis HOM05D005372 ORTHO05D006593 1.5e-19 100.1 80 61.2
AagrBONN_evm.TU.Sc2ySwM_228.2511 Anthoceros agrestis HOM05D005372 ORTHO05D006593 1.9e-19 99.8 108 50.0
Mapoly0002s0283 Marchantia polymorpha HOM05D005372 ORTHO05D006593 3.3e-19 99.0 81 51.9
COL.COLO4_19070 Corchorus olitorius HOM05D005372 ORTHO05D006593 1.4e-17 93.6 138 40.6
Pp3c9_8860 Physcomitrium patens HOM05D005372 ORTHO05D006593 8.9e-17 90.9 96 46.9
Glyma.12G037300 Glycine max HOM05D005372 ORTHO05D006593 7.1e-14 81.3 95 46.3
vmacro03009 Vaccinium macrocarpon HOM05D005372 ORTHO05D006593 6.0e-13 78.2 150 38.7
CBR_g8222 Chara braunii HOM05D005372 ORTHO05D006593 1.5e-11 73.6 101 38.6
MD06G1146500 Malus domestica HOM05D005372 ORTHO05D006593 7.3e-11 71.2 84 48.8
SMO111G0201 Selaginella moellendorffii HOM05D005372 ORTHO05D006593 1.8e-09 66.6 76 40.8
Dinv20930 Davidia involucrata HOM05D005372 ORTHO05D006593 5.2e-09 65.1 44 61.4
Dinv21014 Davidia involucrata HOM05D005372 ORTHO05D006593 8.9e-09 64.3 43 62.8
Zm00001eb217580 Zea mays HOM05D000360 ORTHO05D000234 9.9e-08 60.8 48 54.2
Zm00001eb023370 Zea mays HOM05D000798 ORTHO05D000659 8.4e-07 57.8 48 54.2


User provided reference genes

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