Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p10700 Brassica napus HOM05D005386 ORTHO05D006981 2.0e-178 629.0 322 100.0
BolC3t13704H Brassica oleracea HOM05D005386 ORTHO05D006981 8.6e-166 587.0 325 94.2
C03p12310 Brassica napus HOM05D005386 ORTHO05D006981 6.2e-164 580.9 325 92.9
BraA03t10382Z Brassica rapa HOM05D005386 ORTHO05D006981 6.8e-163 577.4 325 94.2
Sp6g22900 Schrenkiella parvula HOM05D005386 ORTHO05D006981 8.3e-161 570.5 323 92.0
Thhalv10014124m.g Eutrema salsugineum HOM05D005386 ORTHO05D006981 4.6e-159 564.7 321 90.3
AT5G22340 Arabidopsis thaliana HOM05D005386 ORTHO05D006981 9.6e-149 530.4 322 84.8
BcaB01g04714 Brassica carinata HOM05D005386 ORTHO05D006981 8.1e-148 527.3 326 86.2
BcaC01g06587 Brassica carinata HOM05D005386 ORTHO05D006981 1.9e-144 516.2 342 81.3
AL6G33360 Arabidopsis lyrata HOM05D005386 ORTHO05D006981 4.2e-144 515.0 324 83.0
Carub.0006s2008 Capsella rubella HOM05D005386 ORTHO05D006981 2.7e-143 512.3 325 82.8
THA.LOC104810925 Tarenaya hassleriana HOM05D005386 ORTHO05D006981 3.2e-120 435.6 320 70.3
BcaC01g06590 Brassica carinata HOM05D005386 ORTHO05D006981 7.9e-119 431.0 255 89.0
Gorai.009G084000 Gossypium raimondii HOM05D005386 ORTHO05D006981 1.8e-99 366.7 302 63.9
Gohir.D05G082400 Gossypium hirsutum HOM05D005386 ORTHO05D006981 2.4e-99 366.3 302 63.9
Aa31LG1G13200 Aethionema arabicum HOM05D005386 ORTHO05D006981 7.0e-99 364.8 236 82.2
COL.COLO4_34005 Corchorus olitorius HOM05D005386 ORTHO05D006981 5.0e-97 358.6 290 65.5
Gohir.A05G079500 Gossypium hirsutum HOM05D005386 ORTHO05D006981 1.1e-96 357.5 302 63.2
Atru.chr3.3168 Acer truncatum HOM05D005386 ORTHO05D006981 4.2e-96 355.5 297 62.6
Manes.04G001400 Manihot esculenta HOM05D005386 ORTHO05D006981 5.5e-96 355.1 294 62.2
Ciclev10028837m.g Citrus clementina HOM05D005386 ORTHO05D006981 2.7e-95 352.8 292 62.7
QL01p011847 Quercus lobata HOM05D005386 ORTHO05D006981 1.0e-94 350.9 280 64.3
Potri.009G160500 Populus trichocarpa HOM05D005386 ORTHO05D006981 5.2e-94 348.6 295 61.0
GSVIVG01036080001 Vitis vinifera HOM05D005386 ORTHO05D006981 2.6e-93 346.3 290 62.8
Cfa009987 Carpinus fangiana HOM05D005386 ORTHO05D006981 5.7e-93 345.1 287 60.6
FvH4_2g14080 Fragaria vesca HOM05D005386 ORTHO05D006981 2.8e-92 342.8 293 62.1
RcHm_v2.0_Chr5g0045261 Rosa chinensis HOM05D005386 ORTHO05D006981 2.8e-92 342.8 323 58.8
Haze_23346 Corylus avellana HOM05D005386 ORTHO05D006981 2.4e-91 339.7 287 60.3
Duzib168G0172 Durio zibethinus HOM05D005386 ORTHO05D006981 5.3e-91 338.6 288 61.8
TWI31G0673 Tripterygium wilfordii HOM05D005386 ORTHO05D006981 7.0e-91 338.2 278 63.3
MD03G1149900 Malus domestica HOM05D005386 ORTHO05D006981 4.5e-90 335.5 280 63.2
CANSAT54G1533 Cannabis sativa HOM05D005386 ORTHO05D006981 7.7e-90 334.7 292 61.3
CsaV3_1G015030 Cucumis sativus L. HOM05D005386 ORTHO05D006981 5.0e-89 332.0 322 56.5
CiPaw.14G098000 Carya illinoinensis HOM05D005386 ORTHO05D006981 6.5e-89 331.6 280 59.6
TAR633G0448 Trochodendron aralioides HOM05D005386 ORTHO05D006981 8.5e-89 331.3 304 59.9
Prupe.6G135900 Prunus persica HOM05D005386 ORTHO05D006981 1.9e-88 330.1 295 59.3
Lj3g0020097 Lotus japonicus HOM05D005386 ORTHO05D006981 2.5e-88 329.7 270 64.1
ClCG01G011810 Citrullus lanatus HOM05D005386 ORTHO05D006981 4.2e-88 328.9 321 56.1
Duzib170G0830 Durio zibethinus HOM05D005386 ORTHO05D006981 7.2e-88 328.2 264 65.9
Dinv08924 Davidia involucrata HOM05D005386 ORTHO05D006981 1.6e-87 327.0 272 63.6
Eucgr.J00523 Eucalyptus grandis HOM05D005386 ORTHO05D006981 2.7e-87 326.2 280 60.4
Cc01_g08820 Coffea canephora HOM05D005386 ORTHO05D006981 4.7e-87 325.5 313 56.2
arahy.Tifrunner.gnm1.ann1.E6G7P2 Arachis hypogaea HOM05D005386 ORTHO05D006981 6.1e-87 325.1 320 57.2
Glyma.11G181300 Glycine max HOM05D005386 ORTHO05D006981 6.1e-87 325.1 294 59.2
Lj1A257T31 Lonicera japonica HOM05D005386 ORTHO05D006981 8.0e-87 324.7 270 63.0
Sed0024067 Sechium edule HOM05D005386 ORTHO05D006981 1.8e-86 323.6 291 59.8
Sopen11g027400 Solanum pennellii HOM05D005386 ORTHO05D006981 5.2e-86 322.0 301 57.8
Solyc11g068680.2 Solanum lycopersicum HOM05D005386 ORTHO05D006981 2.0e-85 320.1 301 57.5
TPR.G17201 Trifolium pratense HOM05D005386 ORTHO05D006981 2.6e-85 319.7 266 62.4
Lalb_Chr03g0028241 Lupinus albus HOM05D005386 ORTHO05D006981 4.4e-85 318.9 286 58.7
CSS0011344 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 5.7e-85 318.5 273 62.6
CSS0028109 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 5.7e-85 318.5 273 62.6
Psat7g187240 Pisum sativum HOM05D005386 ORTHO05D006981 1.7e-84 317.0 287 58.5
Ca_19443_v3 Cicer arietinum L. HOM05D005386 ORTHO05D006981 3.7e-84 315.8 280 58.9
Nitab4.5_0000731g0080 Nicotiana tabacum HOM05D005386 ORTHO05D006981 8.3e-84 314.7 305 55.4
Migut.D02364 Erythranthe guttata HOM05D005386 ORTHO05D006981 2.4e-83 313.2 290 56.2
Nitab4.5_0008177g0060 Nicotiana tabacum HOM05D005386 ORTHO05D006981 2.4e-83 313.2 273 58.6
Hma1.2p1_0319F.1_g123920 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 5.4e-83 312.0 271 59.8
MSTRG.18771 Avicennia marina HOM05D005386 ORTHO05D006981 7.0e-83 311.6 290 54.5
Sc06g0008690 Simmondsia chinensis HOM05D005386 ORTHO05D006981 2.7e-82 309.7 282 59.6
Nn7g37254 Nelumbo nucifera HOM05D005386 ORTHO05D006981 7.7e-82 308.1 303 56.1
Peaxi162Scf00224g00218 Petunia axillaris HOM05D005386 ORTHO05D006981 2.2e-81 306.6 303 54.8
EL10Ac9g22916 Beta vulgaris HOM05D005386 ORTHO05D006981 5.0e-81 305.4 323 52.3
DCAR_022894 Daucus carota HOM05D005386 ORTHO05D006981 8.5e-81 304.7 305 55.1
FAN20G2771 Fragaria x ananassa HOM05D005386 ORTHO05D006981 1.9e-80 303.5 309 55.0
PSO339G6531 Papaver somniferum HOM05D005386 ORTHO05D006981 3.2e-80 302.8 294 55.8
ECA238G0234 Erigeron canadensis HOM05D005386 ORTHO05D006981 4.7e-79 298.9 264 59.8
Medtr4g052500 Medicago truncatula HOM05D005386 ORTHO05D006981 3.0e-78 296.2 272 58.1
ATR0307G012 Amborella trichopoda HOM05D005386 ORTHO05D006981 8.8e-78 294.7 273 56.8
PSO384G1357 Papaver somniferum HOM05D005386 ORTHO05D006981 1.2e-77 294.3 303 54.1
Lsat_1_v5_gn_2_3840 Lactuca sativa HOM05D005386 ORTHO05D006981 2.0e-77 293.5 262 59.2
Glyma.12G091900 Glycine max HOM05D005386 ORTHO05D006981 2.6e-77 293.1 274 57.3
HanXRQChr06g0183931 Helianthus annuus HOM05D005386 ORTHO05D006981 2.9e-73 279.6 291 55.3
vmacro14339 Vaccinium macrocarpon HOM05D005386 ORTHO05D006981 1.5e-72 277.3 360 46.4
Ah.01g001670 Amaranthus hybridus HOM05D005386 ORTHO05D006981 7.3e-72 275.0 279 53.4
MELO3C025590.2 Cucumis melo HOM05D005386 ORTHO05D006981 9.5e-72 274.6 296 53.7
Rhsim01G0203700 Rhododendron simsii HOM05D005386 ORTHO05D006981 1.2e-71 274.2 270 58.1
arahy.Tifrunner.gnm1.ann1.PADK5G Arachis hypogaea HOM05D005386 ORTHO05D006981 1.6e-71 273.9 285 54.4
CDE08G0019 Ceratophyllum demersum HOM05D005386 ORTHO05D006981 1.0e-70 271.2 285 50.9
PGR119G1266 Punica granatum HOM05D005386 ORTHO05D006981 1.8e-70 270.4 251 55.4
MBI19_g34002_MAGBIO Magnolia biondii HOM05D005386 ORTHO05D006981 2.3e-70 270.0 292 52.7
Zm00001eb395560 Zea mays HOM05D005386 ORTHO05D006981 1.5e-69 267.3 308 47.1
Os03g0322600 Oryza sativa ssp. japonica HOM05D005386 ORTHO05D006981 2.2e-68 263.5 297 47.5
HPP92_001703 Vanilla planifolia HOM05D005386 ORTHO05D006981 6.4e-68 261.9 272 51.8
SGA_v2.0_scaffold7G04001 Striga asiatica HOM05D005386 ORTHO05D006981 1.4e-67 260.8 282 50.7
Actinidia37072 Actinidia chinensis HOM05D005386 ORTHO05D006981 3.0e-65 253.1 274 54.7
SEGI_27763 Sequoiadendron giganteum HOM05D005386 ORTHO05D006981 3.9e-65 252.7 288 45.5
CARHR191200 Cardamine hirsuta HOM05D005386 ORTHO05D006981 5.0e-65 252.3 167 78.4
FAN24G0713 Fragaria x ananassa HOM05D005386 ORTHO05D006981 2.1e-63 246.9 213 60.1
Aqoxy1G00008 Aquilegia oxysepala HOM05D005386 ORTHO05D006981 4.7e-63 245.7 270 48.9
unitig_736.g22394 Utricularia gibba HOM05D005386 ORTHO05D006981 3.4e-61 239.6 264 51.9
Hund18776 Selenicereus undatus HOM05D005386 ORTHO05D006981 1.4e-59 234.2 438 36.8
Oeu014472.1 Olea europaea HOM05D005386 ORTHO05D006981 2.8e-55 219.9 155 71.0
AUR62017661 Chenopodium quinoa HOM05D005386 ORTHO05D006981 6.2e-55 218.8 268 48.1
AUR62015198 Chenopodium quinoa HOM05D005386 ORTHO05D006981 1.1e-54 218.0 275 46.9
Cpa.g.sc195.24 Carica papaya HOM05D005386 ORTHO05D006981 1.8e-54 217.2 151 70.9
Zm00001eb015340 Zea mays HOM05D005386 ORTHO05D006981 5.2e-54 215.7 200 54.0
Mapoly0094s0013 Marchantia polymorpha HOM05D005386 ORTHO05D006981 2.6e-53 213.4 320 40.6
Zm00001eb285540 Zea mays HOM05D005386 ORTHO05D006981 2.9e-52 209.9 264 43.6
FAN15G3687 Fragaria x ananassa HOM05D005386 ORTHO05D006981 4.9e-52 209.1 133 75.9
Hma1.2p1_0319F.1_g123910 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 8.6e-49 198.4 150 66.0
Phvul.011G096200 Phaseolus vulgaris HOM05D005386 ORTHO05D006981 9.9e-45 184.9 179 55.9
AagrBONN_evm.TU.Sc2ySwM_228.4159 Anthoceros agrestis HOM05D005386 ORTHO05D006981 4.6e-42 176.0 266 39.8
SalBow6G0611 Salvia bowleyana HOM05D005386 ORTHO05D006981 1.2e-39 167.9 239 42.7
AUR62014970 Chenopodium quinoa HOM05D005386 ORTHO05D006981 1.1e-38 164.9 278 38.8
Ciclev10029637m.g Citrus clementina HOM05D005386 ORTHO05D006981 8.9e-38 161.8 98 75.5
Pp3c20_23100 Physcomitrium patens HOM05D005386 ORTHO05D006981 4.4e-37 159.5 183 45.4
Aa31LG1G13190 Aethionema arabicum HOM05D005386 ORTHO05D006981 2.9e-36 156.8 87 87.4
SMO140G0002 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 1.9e-35 154.1 272 37.1
TAR633G2192 Trochodendron aralioides HOM05D005386 ORTHO05D006981 7.1e-35 152.1 166 52.4
SMO338G0026 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 9.3e-35 151.8 216 43.5
Ciclev10029895m.g Citrus clementina HOM05D005386 ORTHO05D006981 1.7e-33 147.5 98 69.4
FvH4_2g10370 Fragaria vesca HOM05D005386 ORTHO05D006981 2.3e-33 147.1 133 57.9
VMungo1127G0965 Vigna mungo HOM05D005386 ORTHO05D006981 1.3e-31 141.4 198 44.9
Thecc.09G278700 Theobroma cacao HOM05D005386 ORTHO05D006981 4.0e-30 136.3 200 47.0
VMungo1127G1152 Vigna mungo HOM05D005386 ORTHO05D006981 9.9e-29 131.7 93 67.7
AUR62043809 Chenopodium quinoa HOM05D004271 ORTHO05D006011 1.3e-28 131.3 139 51.1
arahy.Tifrunner.gnm1.ann1.M18R9V Arachis hypogaea HOM05D005386 ORTHO05D006981 2.4e-27 127.1 100 63.0
FAN24G3375 Fragaria x ananassa HOM05D005386 ORTHO05D006981 1.3e-20 104.8 135 45.9
arahy.Tifrunner.gnm1.ann1.J76LRM Arachis hypogaea HOM05D005386 ORTHO05D006981 3.9e-17 93.2 84 58.3
arahy.Tifrunner.gnm1.ann1.XDN0DP Arachis hypogaea HOM05D005386 ORTHO05D006981 1.1e-16 91.7 72 62.5
arahy.Tifrunner.gnm1.ann1.TQJ2IB Arachis hypogaea HOM05D005386 ORTHO05D006981 1.1e-14 85.1 82 57.3
C03p46250 Brassica napus HOM05D020391 ORTHO05D033527 8.4e-12 75.5 39 94.9
BolC8t50118H Brassica oleracea HOM05D020391 ORTHO05D033527 8.4e-12 75.5 39 94.9
arahy.Tifrunner.gnm1.ann1.CXSI0G Arachis hypogaea HOM05D000290 ORTHO05D002418 7.1e-11 72.4 103 43.7
AagrBONN_evm.TU.Sc2ySwM_228.3020 Anthoceros agrestis HOM05D006699 ORTHO05D008399 1.2e-10 71.6 159 31.4
arahy.Tifrunner.gnm1.ann1.9EB2HI Arachis hypogaea HOM05D005386 ORTHO05D006981 6.0e-10 69.3 61 60.7
arahy.Tifrunner.gnm1.ann1.XD28JK Arachis hypogaea HOM05D005386 ORTHO05D006981 7.9e-10 68.9 61 60.7
Cpa.g.sc195.25 Carica papaya HOM05D005386 ORTHO05D006981 8.7e-09 65.5 55 65.5
MD09G1069600 Malus domestica HOM05D005386 ORTHO05D006981 8.7e-09 65.5 98 43.9
Cpa.g.sc195.26 Carica papaya HOM05D005386 ORTHO05D006981 3.3e-08 63.5 74 47.3
arahy.Tifrunner.gnm1.ann1.QCQ2D8 Arachis hypogaea HOM05D005386 ORTHO05D006981 4.3e-08 63.2 49 61.2
arahy.Tifrunner.gnm1.ann1.V0D9HX Arachis hypogaea HOM05D005386 ORTHO05D084459 5.7e-08 62.8 63 54.0
Mapoly0038s0046 Marchantia polymorpha HOM05D006699 ORTHO05D008399 5.7e-08 62.8 180 26.7
arahy.Tifrunner.gnm1.ann1.YZK62K Arachis hypogaea HOM05D005386 ORTHO05D006981 7.4e-08 62.4 77 44.2
CBR_g22416 Chara braunii HOM05D005386 ORTHO05D006981 1.3e-07 61.6 88 34.1
FvH4_2g10360 Fragaria vesca HOM05D005386 ORTHO05D006981 8.2e-07 58.9 47 61.7
C08p24990 Brassica napus HOM05D020391 ORTHO05D033527 1.8e-06 57.8 33 81.8
Hma1.2p1_0319F.1_g123930 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 6.9e-06 55.8 43 55.8


User provided reference genes

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