Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 4.5e-155 551.2 275 100.0
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 6.5e-154 547.4 275 99.6
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 3.5e-152 541.6 275 98.5
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 3.5e-152 541.6 275 98.5
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 1.1e-150 536.6 275 97.8
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 1.5e-126 456.4 284 84.9
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 6.3e-125 451.1 273 85.0
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 3.6e-112 408.7 285 78.2
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 4.7e-112 408.3 287 77.4
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 1.0e-95 354.0 292 69.5
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 9.8e-94 347.4 285 69.1
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 6.4e-93 344.7 287 69.3
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 4.7e-88 328.6 288 66.3
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 2.4e-68 263.1 292 53.8
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 2.3e-66 256.5 299 56.5
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 5.1e-66 255.4 291 51.9
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 4.3e-65 252.3 280 56.1
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 4.4e-62 242.3 291 50.9
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 4.9e-61 238.8 292 51.7
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 2.1e-59 233.4 281 50.5
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 1.0e-58 231.1 281 50.2
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 1.3e-58 230.7 281 49.8
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 1.7e-58 230.3 291 48.8
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 7.3e-57 224.9 265 50.6
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 2.4e-55 219.9 287 48.4
BcaNung07133 Brassica carinata HOM05D005413 ORTHO05D006536 3.1e-55 219.5 125 91.2
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 3.1e-55 219.5 268 50.0
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 1.5e-54 217.2 327 44.3
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 2.0e-54 216.9 292 47.9
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 2.0e-54 216.9 292 47.9
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 2.0e-54 216.9 290 46.2
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 2.9e-53 213.0 268 48.9
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 6.4e-53 211.8 292 45.5
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 6.4e-53 211.8 268 48.5
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 1.4e-52 210.7 292 45.2
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 1.4e-52 210.7 267 48.3
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 7.1e-52 208.4 290 45.5
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 2.1e-51 206.8 297 44.4
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 3.5e-51 206.1 291 46.0
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 1.8e-50 203.8 291 44.3
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 1.8e-50 203.8 301 41.9
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 3.9e-50 202.6 293 45.4
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 1.3e-48 197.6 295 42.0
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 6.2e-48 195.3 299 43.5
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 8.1e-48 194.9 210 54.3
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 1.4e-47 194.1 295 42.4
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.4e-47 193.4 323 40.9
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.4e-47 193.4 323 40.9
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 6.9e-47 191.8 294 42.9
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 1.2e-46 191.0 294 44.9
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 1.5e-46 190.7 290 42.8
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 1.3e-45 187.6 296 43.9
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 2.2e-45 186.8 284 44.0
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 4.9e-45 185.7 303 42.6
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 1.1e-44 184.5 287 43.6
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 2.5e-44 183.3 229 47.6
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 3.2e-44 183.0 286 42.3
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 5.5e-44 182.2 277 45.5
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 3.5e-43 179.5 211 53.1
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 7.9e-43 178.3 289 41.9
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 1.3e-42 177.6 287 42.5
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.3e-42 176.8 268 44.0
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 1.9e-41 173.7 279 39.8
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 1.6e-40 170.6 257 44.0
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 2.1e-40 170.2 290 39.7
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 8.2e-40 168.3 292 39.0
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 8.2e-40 168.3 294 39.8
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 2.4e-39 166.8 292 40.1
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 1.5e-38 164.1 243 44.4
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 2.0e-38 163.7 244 43.9
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 2.6e-38 163.3 249 43.4
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 1.0e-37 161.4 296 40.5
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 1.3e-37 161.0 293 38.6
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 1.3e-37 161.0 292 40.1
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 2.2e-37 160.2 293 39.9
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 2.2e-37 160.2 345 38.3
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 2.9e-37 159.8 293 39.9
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 3.2e-36 156.4 213 45.5
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 3.2e-36 156.4 212 46.7
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 2.7e-35 153.3 295 39.0
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 3.5e-35 152.9 390 33.6
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 4.6e-35 152.5 283 37.8
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 7.9e-35 151.8 315 34.6
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.9e-33 147.1 403 32.0
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 1.3e-32 144.4 269 39.0
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 2.8e-32 143.3 224 42.4
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 3.7e-32 142.9 287 39.4
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 6.3e-32 142.1 244 41.0
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 8.2e-32 141.7 301 36.9
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.1e-31 141.4 273 38.8
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 1.4e-31 141.0 286 37.1
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 4.1e-31 139.4 273 38.8
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 9.0e-31 138.3 277 38.3
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 2.6e-30 136.7 237 40.1
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 2.2e-29 133.7 294 34.4
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 3.8e-29 132.9 250 38.8
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 5.0e-29 132.5 287 35.2
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 6.5e-29 132.1 189 43.4
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 3.2e-28 129.8 210 40.5
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 4.2e-28 129.4 291 35.1
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 4.2e-28 129.4 163 49.1
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 6.1e-27 125.6 289 35.3
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 7.9e-27 125.2 275 33.8
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 2.0e-25 120.6 298 31.5
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 4.3e-25 119.4 172 44.2
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 2.8e-24 116.7 268 36.9
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 3.7e-24 116.3 251 36.7
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 8.2e-24 115.2 304 33.2
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 1.4e-23 114.4 258 32.9
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 6.9e-23 112.1 213 39.0
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 1.2e-22 111.3 252 33.7
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 1.7e-21 107.5 231 33.8
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 5.0e-21 105.9 161 43.5
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 6.5e-21 105.5 330 31.2
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 1.4e-20 104.4 298 31.2
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 2.5e-20 103.6 217 38.2
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 3.2e-20 103.2 331 30.5
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 6.1e-19 99.0 149 41.6
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.0e-18 98.2 123 46.3
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 2.3e-18 97.1 241 33.2
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 5.1e-18 95.9 358 27.4
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 1.1e-17 94.7 271 32.5
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 9.7e-17 91.7 225 34.7
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 2.8e-16 90.1 297 32.0
BcaB05g22753 Brassica carinata HOM05D005413 ORTHO05D006536 1.4e-15 87.8 53 81.1
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 5.3e-15 85.9 132 39.4
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 1.6e-14 84.3 132 38.6
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 2.0e-14 84.0 207 32.9
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 2.0e-14 84.0 281 28.8
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 2.6e-14 83.6 143 35.7
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 1.0e-13 81.6 143 35.0
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 1.0e-13 81.6 201 32.8
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 1.0e-13 81.6 129 38.0
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 7.2e-12 75.5 145 35.2
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 9.4e-12 75.1 244 28.3
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 1.2e-11 74.7 182 33.5
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 2.1e-11 73.9 183 33.3
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 1.4e-10 71.2 83 51.8
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 5.3e-07 59.3 231 29.0
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 1.2e-06 58.2 81 40.7
PGR044G1324 Punica granatum HOM05D003044 ORTHO05D001869 1.6e-06 57.8 66 43.9


User provided reference genes

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