Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p09870 Brassica napus HOM05D005250 ORTHO05D006342 2.2e-42 175.3 90 100.0
A07p01490 Brassica napus HOM05D005250 ORTHO05D006342 4.3e-30 134.4 73 97.3
BcaC04g21447 Brassica carinata HOM05D005250 ORTHO05D006342 1.2e-27 126.3 88 79.5
BcaC06g35305 Brassica carinata HOM05D005250 ORTHO05D006342 1.2e-27 126.3 88 79.5
A09p24730 Brassica napus HOM05D005250 ORTHO05D000117 1.2e-27 126.3 88 79.5
C09p31650 Brassica napus HOM05D005250 ORTHO05D006342 1.2e-27 126.3 88 79.5
BcaB07g30645 Brassica carinata HOM05D005250 ORTHO05D006342 2.0e-27 125.6 88 78.4
Carub.0005s0293 Capsella rubella HOM05D005250 ORTHO05D006342 3.4e-27 124.8 88 78.4
C04p21460 Brassica napus HOM05D005250 ORTHO05D006342 4.4e-27 124.4 75 89.3
C09p61860 Brassica napus HOM05D005250 ORTHO05D006342 4.4e-27 124.4 74 89.2
AL5G13570 Arabidopsis lyrata HOM05D005250 ORTHO05D006342 7.5e-27 123.6 88 77.3
BraA09t38059Z Brassica rapa HOM05D005250 ORTHO05D000117 7.5e-27 123.6 88 78.4
Sp2g14610 Schrenkiella parvula HOM05D005250 ORTHO05D006342 7.5e-27 123.6 88 77.3
Thhalv10004726m.g Eutrema salsugineum HOM05D005250 ORTHO05D006342 2.9e-26 121.7 88 77.3
CARHR146190 Cardamine hirsuta HOM05D005250 ORTHO05D006342 6.4e-26 120.6 88 75.0
A05p26370 Brassica napus HOM05D005250 ORTHO05D006342 3.9e-23 111.3 74 81.1
Sed0024712 Sechium edule HOM05D005250 ORTHO05D006342 9.9e-19 96.7 88 62.5
BolC7t42269H Brassica oleracea HOM05D005250 ORTHO05D006342 1.3e-18 96.3 146 45.9
BolC9t57871H Brassica oleracea HOM05D005250 ORTHO05D006342 1.3e-18 96.3 126 50.8
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 1.7e-18 95.9 88 61.4
BraA04t18025Z Brassica rapa HOM05D005250 ORTHO05D006342 2.9e-18 95.1 60 81.7
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 3.8e-18 94.7 88 59.1
Hma1.2p1_0473F.1_g160070 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 6.4e-18 94.0 83 62.7
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 8.4e-18 93.6 85 63.5
BolC4t23671H Brassica oleracea HOM05D005250 ORTHO05D006342 1.1e-17 93.2 147 45.6
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 1.4e-17 92.8 92 60.9
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 1.4e-17 92.8 88 60.2
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 3.2e-17 91.7 88 59.1
BcaC04g19887 Brassica carinata HOM05D005250 ORTHO05D006342 4.2e-17 91.3 72 69.4
Ca_22871_v3 Cicer arietinum L. HOM05D005250 ORTHO05D006342 4.2e-17 91.3 89 59.6
Aa31LG2G6930 Aethionema arabicum HOM05D005250 ORTHO05D006342 5.4e-17 90.9 62 75.8
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 9.2e-17 90.1 87 59.8
PSO339G6010 Papaver somniferum HOM05D005250 ORTHO05D006342 2.7e-16 88.6 83 60.2
PSO384G2373 Papaver somniferum HOM05D005250 ORTHO05D006342 2.7e-16 88.6 83 60.2
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 3.5e-16 88.2 85 60.0
C07p17630 Brassica napus HOM05D005250 ORTHO05D006342 4.6e-16 87.8 48 93.8
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 4.6e-16 87.8 77 62.3
Ciclev10032293m.g Citrus clementina HOM05D005250 ORTHO05D006342 6.0e-16 87.4 88 56.8
arahy.Tifrunner.gnm1.ann1.F58IRU Arachis hypogaea HOM05D005250 ORTHO05D006342 7.8e-16 87.0 89 57.3
MBI19_g20787_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 7.8e-16 87.0 70 67.1
PGSC0003DMG400001920 Solanum tuberosum HOM05D005250 ORTHO05D006342 7.8e-16 87.0 87 58.6
arahy.Tifrunner.gnm1.ann1.78R55B Arachis hypogaea HOM05D005250 ORTHO05D006342 1.0e-15 86.7 89 57.3
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 1.0e-15 86.7 88 58.0
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 1.0e-15 86.7 87 58.6
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 1.3e-15 86.3 77 63.6
THA.LOC104805209 Tarenaya hassleriana HOM05D005250 ORTHO05D006342 1.3e-15 86.3 75 65.3
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 1.3e-15 86.3 90 57.8
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 1.7e-15 85.9 74 64.9
Psat4g092800 Pisum sativum HOM05D005250 ORTHO05D006342 1.7e-15 85.9 87 57.5
Actinidia13405 Actinidia chinensis HOM05D005250 ORTHO05D006342 2.3e-15 85.5 85 58.8
GSVIVG01010104001 Vitis vinifera HOM05D005250 ORTHO05D006342 2.3e-15 85.5 83 59.0
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 3.0e-15 85.1 87 57.5
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 6.6e-15 84.0 75 62.7
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 1.1e-14 83.2 83 55.4
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 1.5e-14 82.8 71 64.8
Aa31LG5G22420 Aethionema arabicum HOM05D001647 ORTHO05D001191 2.5e-14 82.0 86 52.3
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 2.5e-14 82.0 85 58.8
TPR.G3346 Trifolium pratense HOM05D005250 ORTHO05D006342 3.3e-14 81.6 92 52.2
Eucgr.G02422 Eucalyptus grandis HOM05D005250 ORTHO05D006342 4.3e-14 81.3 83 59.0
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 7.3e-14 80.5 75 64.0
Haze_11860 Corylus avellana HOM05D005250 ORTHO05D006342 7.3e-14 80.5 64 70.3
Duzib251G0604 Durio zibethinus HOM05D005250 ORTHO05D006342 7.3e-14 80.5 85 56.5
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 1.2e-13 79.7 77 59.7
MBI19_g36132_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 2.1e-13 79.0 63 66.7
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 3.6e-13 78.2 88 52.3
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 3.6e-13 78.2 92 57.6
Medtr8g066180 Medicago truncatula HOM05D005250 ORTHO05D006342 3.6e-13 78.2 91 50.5
Nitab4.5_0000591g0010 Nicotiana tabacum HOM05D005250 ORTHO05D006342 3.6e-13 78.2 69 65.2
Sabra10G0106500 Salix brachista HOM05D005250 ORTHO05D006342 3.6e-13 78.2 93 53.8
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 3.6e-13 78.2 83 56.6
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 8.1e-13 77.0 88 52.3
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 1.1e-12 76.6 71 57.7
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 1.4e-12 76.3 90 55.6
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 5.3e-12 74.3 83 50.6
Psat4g118880 Pisum sativum HOM05D005250 ORTHO05D006342 5.3e-12 74.3 83 51.8
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 5.3e-12 74.3 70 57.1
HPP92_021194 Vanilla planifolia HOM05D005250 ORTHO05D006342 6.9e-12 73.9 83 50.6
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 1.2e-11 73.2 61 65.6
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 1.5e-11 72.8 87 52.9
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 3.4e-11 71.6 82 51.2
MD13G1056700 Malus domestica HOM05D005250 ORTHO05D006342 3.4e-11 71.6 65 64.6
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 3.4e-11 71.6 89 53.9
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 4.4e-11 71.2 99 49.5
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 5.8e-11 70.9 62 62.9
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 9.9e-11 70.1 100 44.0
A02p31010 Brassica napus HOM05D005250 ORTHO05D096592 9.9e-11 70.1 42 85.7
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 9.9e-11 70.1 90 51.1
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 9.9e-11 70.1 49 75.5
SGA_v2.0_scaffold36G14486 Striga asiatica HOM05D005250 ORTHO05D006342 1.3e-10 69.7 93 50.5
Glyma.11G011400 Glycine max HOM05D005250 ORTHO05D006342 2.9e-10 68.6 83 48.2
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 3.8e-10 68.2 74 54.1
HanXRQChr12g0365051 Helianthus annuus HOM05D005250 ORTHO05D006342 4.9e-10 67.8 94 47.9
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 1.4e-09 66.2 55 65.5
arahy.Tifrunner.gnm1.ann1.LMD1JY Arachis hypogaea HOM05D005250 ORTHO05D006342 3.2e-09 65.1 61 57.4
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 4.6e-08 61.2 85 50.6
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 2.3e-07 58.9 79 50.6
unitig_26.g10282 Utricularia gibba HOM05D005250 ORTHO05D006342 2.3e-07 58.9 99 38.4
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 5.1e-07 57.8 48 62.5
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 1.5e-06 56.2 57 52.6
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 2.5e-06 55.5 69 53.6


User provided reference genes

Program Settings