Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p08790 Brassica napus HOM05D004543 ORTHO05D006042 0.0e+00 1421.4 725 100.0
C03p10280 Brassica napus HOM05D004543 ORTHO05D006042 0.0e+00 1272.7 726 89.4
BraA03t10204Z Brassica rapa HOM05D004543 ORTHO05D006042 0.0e+00 1272.7 726 89.4
BolC3t13508H Brassica oleracea HOM05D004543 ORTHO05D006042 0.0e+00 1269.6 725 89.9
BcaB01g05188 Brassica carinata HOM05D004543 ORTHO05D006042 0.0e+00 1210.3 696 89.2
Sp6g25960 Schrenkiella parvula HOM05D004543 ORTHO05D006042 0.0e+00 1137.5 738 79.4
AL3G15410 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 0.0e+00 1103.2 755 76.7
Carub.0003s0428 Capsella rubella HOM05D004543 ORTHO05D006042 0.0e+00 1092.4 762 75.3
BcaNung04937 Brassica carinata HOM05D004543 ORTHO05D006042 0.0e+00 1088.6 696 82.6
AL7G28340 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 0.0e+00 1076.2 761 76.0
Carub.0007s1621 Capsella rubella HOM05D004543 ORTHO05D006042 2.1e-308 1062.0 759 75.1
Thhalv10024490m.g Eutrema salsugineum HOM05D004543 ORTHO05D006042 4.6e-308 1060.8 762 74.3
Sp7g22830 Schrenkiella parvula HOM05D004543 ORTHO05D006042 2.3e-307 1058.5 761 73.6
AT4G24840 Arabidopsis thaliana HOM05D004543 ORTHO05D006042 1.8e-304 1048.9 761 74.1
C01p20140 Brassica napus HOM05D004543 ORTHO05D006042 1.3e-302 1042.7 763 72.5
BolC1t01943H Brassica oleracea HOM05D004543 ORTHO05D006042 1.3e-302 1042.7 763 72.5
BcaC06g32853 Brassica carinata HOM05D004543 ORTHO05D006042 3.8e-302 1041.2 760 72.6
BolC7t45874H Brassica oleracea HOM05D004543 ORTHO05D006042 3.8e-302 1041.2 760 72.6
A01p16150 Brassica napus HOM05D004543 ORTHO05D006042 4.9e-302 1040.8 761 72.3
BraA01t01551Z Brassica rapa HOM05D004543 ORTHO05D006042 4.9e-302 1040.8 761 72.3
C07p53840 Brassica napus HOM05D004543 ORTHO05D006042 1.3e-299 1032.7 760 72.4
A03p55600 Brassica napus HOM05D004543 ORTHO05D006042 2.1e-297 1025.4 760 72.0
BraA03t14627Z Brassica rapa HOM05D004543 ORTHO05D006042 2.1e-297 1025.4 760 72.0
Aa31LG7G11000 Aethionema arabicum HOM05D004543 ORTHO05D006042 3.1e-296 1021.5 784 70.2
THA.LOC104811593 Tarenaya hassleriana HOM05D004543 ORTHO05D006042 6.2e-281 970.7 753 68.0
BcaNung06004 Brassica carinata HOM05D004543 ORTHO05D006042 1.5e-274 949.5 706 72.2
Ciclev10018979m.g Citrus clementina HOM05D004543 ORTHO05D006042 4.5e-263 911.4 756 62.0
CiPaw.11G008900 Carya illinoinensis HOM05D004543 ORTHO05D006042 5.0e-262 907.9 760 62.6
Thecc.06G039500 Theobroma cacao HOM05D004543 ORTHO05D006042 1.9e-261 906.0 757 62.9
Cfa018837 Carpinus fangiana HOM05D004543 ORTHO05D006042 3.6e-260 901.7 757 62.7
QL10p004063 Quercus lobata HOM05D004543 ORTHO05D006042 3.6e-260 901.7 777 61.9
Atru.chr9.1076 Acer truncatum HOM05D004543 ORTHO05D006042 3.9e-259 898.3 757 62.1
Haze_07231 Corylus avellana HOM05D004543 ORTHO05D006042 3.9e-259 898.3 757 62.4
CSS0037462 Camellia sinensis var. sinensis HOM05D004543 ORTHO05D006042 6.7e-259 897.5 750 62.7
COL.COLO4_26675 Corchorus olitorius HOM05D004543 ORTHO05D006042 6.7e-259 897.5 751 62.3
Manes.06G118300 Manihot esculenta HOM05D004543 ORTHO05D006042 2.6e-258 895.6 754 62.1
Dinv11159 Davidia involucrata HOM05D004543 ORTHO05D006042 4.4e-258 894.8 757 62.2
Duzib138G1537 Durio zibethinus HOM05D004543 ORTHO05D006042 5.7e-258 894.4 747 62.8
VMungo1215G3183 Vigna mungo HOM05D004543 ORTHO05D006042 7.4e-258 894.0 759 61.4
Phvul.003G210200 Phaseolus vulgaris HOM05D004543 ORTHO05D006042 1.7e-257 892.9 759 61.0
Lalb_Chr07g0183361 Lupinus albus HOM05D004543 ORTHO05D006042 2.8e-257 892.1 759 61.0
Glyma.17G129100 Glycine max HOM05D004543 ORTHO05D006042 8.2e-257 890.6 759 61.5
arahy.Tifrunner.gnm1.ann1.28ZGNX Arachis hypogaea HOM05D004543 ORTHO05D006042 3.1e-256 888.6 757 62.2
arahy.Tifrunner.gnm1.ann1.9QW7J0 Arachis hypogaea HOM05D004543 ORTHO05D006042 1.2e-255 886.7 757 62.4
Gorai.007G187600 Gossypium raimondii HOM05D004543 ORTHO05D006042 1.2e-255 886.7 747 62.4
Actinidia25587 Actinidia chinensis HOM05D004543 ORTHO05D006042 4.5e-255 884.8 755 61.1
Gohir.D11G175000 Gossypium hirsutum HOM05D004543 ORTHO05D006042 5.9e-255 884.4 747 62.4
Ca_00911_v3 Cicer arietinum L. HOM05D004543 ORTHO05D006042 1.3e-254 883.2 760 60.9
Gohir.A11G168800 Gossypium hirsutum HOM05D004543 ORTHO05D006042 2.2e-254 882.5 747 62.4
MD06G1143400 Malus domestica HOM05D004543 ORTHO05D006042 3.2e-253 878.6 757 60.9
vmacro19212 Vaccinium macrocarpon HOM05D004543 ORTHO05D006042 3.6e-252 875.2 750 61.2
GSVIVG01008523001 Vitis vinifera HOM05D004543 ORTHO05D006042 4.7e-252 874.8 752 61.6
Glyma.05G047300 Glycine max HOM05D004543 ORTHO05D006042 8.8e-251 870.5 759 59.9
Eucgr.B00121 Eucalyptus grandis HOM05D004543 ORTHO05D006042 2.6e-250 869.0 746 61.1
MD14G1158600 Malus domestica HOM05D004543 ORTHO05D006042 4.8e-249 864.8 760 59.7
Actinidia15838 Actinidia chinensis HOM05D004543 ORTHO05D006042 6.3e-249 864.4 756 60.2
RcHm_v2.0_Chr7g0190411 Rosa chinensis HOM05D004543 ORTHO05D006042 4.1e-248 861.7 754 59.7
CANSAT80G2145 Cannabis sativa HOM05D004543 ORTHO05D006042 7.0e-248 860.9 753 60.0
Lj4g0012876 Lotus japonicus HOM05D004543 ORTHO05D006042 2.6e-247 859.0 760 59.9
Prupe.5G152600 Prunus persica HOM05D004543 ORTHO05D006042 5.9e-247 857.8 759 59.9
PGR083G0162 Punica granatum HOM05D004543 ORTHO05D006042 5.9e-247 857.8 759 59.7
TWI23G0493 Tripterygium wilfordii HOM05D004543 ORTHO05D006042 1.3e-246 856.7 758 59.5
Potri.012G096100 Populus trichocarpa HOM05D004543 ORTHO05D006042 1.7e-246 856.3 754 60.2
Hund02429 Selenicereus undatus HOM05D004543 ORTHO05D006042 5.0e-246 854.7 753 60.0
Cpa.g.sc13.138 Carica papaya HOM05D004543 ORTHO05D006042 4.2e-245 851.7 759 60.9
Nn3g16500 Nelumbo nucifera HOM05D004543 ORTHO05D006042 5.5e-245 851.3 750 60.7
Sabra15G0115500 Salix brachista HOM05D004543 ORTHO05D006042 5.5e-245 851.3 755 60.0
Medtr4g103610 Medicago truncatula HOM05D004543 ORTHO05D006042 9.4e-245 850.5 758 59.5
Lj9C477T19 Lonicera japonica HOM05D004543 ORTHO05D006042 1.4e-243 846.7 780 58.6
Potri.015G094000 Populus trichocarpa HOM05D004543 ORTHO05D006042 1.8e-243 846.3 757 60.0
FvH4_5g08050 Fragaria vesca HOM05D004543 ORTHO05D006042 2.3e-243 845.9 770 58.4
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 3.0e-243 845.5 742 60.0
Migut.I00508 Erythranthe guttata HOM05D004543 ORTHO05D006042 5.2e-243 844.7 750 59.2
FAN04G2916 Fragaria x ananassa HOM05D004543 ORTHO05D006042 6.7e-243 844.3 759 59.2
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 1.2e-242 843.6 770 58.4
PGSC0003DMG400026304 Solanum tuberosum HOM05D004543 ORTHO05D006042 2.0e-242 842.8 734 60.6
Cc07_g18860 Coffea canephora HOM05D004543 ORTHO05D006042 2.8e-241 839.0 748 59.0
Sopen08g002610 Solanum pennellii HOM05D004543 ORTHO05D006042 1.1e-240 837.0 727 60.5
Oeu056011.1 Olea europaea HOM05D004543 ORTHO05D006042 1.4e-240 836.6 755 58.3
Sed0023388 Sechium edule HOM05D004543 ORTHO05D006042 4.1e-240 835.1 757 58.3
AUR62029871 Chenopodium quinoa HOM05D004543 ORTHO05D006042 1.6e-239 833.2 749 57.9
EL10As4g23416 Beta vulgaris HOM05D004543 ORTHO05D006042 3.5e-239 832.0 751 59.1
CARHR232260 Cardamine hirsuta HOM05D004543 ORTHO05D006042 3.5e-239 832.0 536 79.9
CsaV3_6G002430 Cucumis sativus L. HOM05D004543 ORTHO05D006042 3.5e-239 832.0 749 58.2
ClCG11G005570 Citrullus lanatus HOM05D004543 ORTHO05D006042 4.5e-239 831.6 752 57.2
Sed0026192 Sechium edule HOM05D004543 ORTHO05D006042 4.5e-239 831.6 748 57.8
Nitab4.5_0001187g0130 Nicotiana tabacum HOM05D004543 ORTHO05D006042 3.8e-238 828.6 746 58.6
Hma1.2p1_1271F.1_g271760 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 3.2e-237 825.5 710 61.3
Aqoxy5G03415 Aquilegia oxysepala HOM05D004543 ORTHO05D006042 3.6e-236 822.0 747 58.0
Nitab4.5_0002497g0060 Nicotiana tabacum HOM05D004543 ORTHO05D006042 8.0e-236 820.8 746 58.2
unitig_8.g3033 Utricularia gibba HOM05D004543 ORTHO05D006042 4.0e-235 818.5 749 57.5
PSO782G5417 Papaver somniferum HOM05D004543 ORTHO05D006042 8.8e-235 817.4 746 57.1
CAN.G906.5 Capsicum annuum HOM05D004543 ORTHO05D006042 1.5e-234 816.6 729 58.8
PSO063G5574 Papaver somniferum HOM05D004543 ORTHO05D006042 5.7e-234 814.7 746 57.0
MELO3C025044.2 Cucumis melo HOM05D004543 ORTHO05D006042 1.7e-233 813.1 749 57.0
Peaxi162Scf00045g00192 Petunia axillaris HOM05D004543 ORTHO05D006042 2.2e-233 812.8 742 59.0
Lsat_1_v5_gn_4_76761 Lactuca sativa HOM05D004543 ORTHO05D006042 3.5e-231 805.4 751 57.0
HanXRQChr09g0273071 Helianthus annuus HOM05D004543 ORTHO05D006042 4.5e-231 805.1 754 57.6
Migut.I00509 Erythranthe guttata HOM05D004543 ORTHO05D006042 5.5e-229 798.1 743 57.7
ECA232G1394 Erigeron canadensis HOM05D004543 ORTHO05D006042 3.0e-227 792.3 748 56.3
SGA_v2.0_scaffold161G37784 Striga asiatica HOM05D004543 ORTHO05D006042 2.0e-226 789.6 755 56.3
TAR622G0482 Trochodendron aralioides HOM05D004543 ORTHO05D006042 2.2e-217 759.6 667 60.1
Psat0s3466g0040 Pisum sativum HOM05D004543 ORTHO05D006042 2.0e-210 736.5 637 60.8
CDE05G1945 Ceratophyllum demersum HOM05D004543 ORTHO05D006042 1.7e-209 733.4 758 53.4
FAN08G2446 Fragaria x ananassa HOM05D004543 ORTHO05D006042 2.2e-209 733.0 767 52.8
Zm00001eb210790 Zea mays HOM05D004543 ORTHO05D006042 9.2e-208 727.6 741 52.1
SEGI_19802 Sequoiadendron giganteum HOM05D004543 ORTHO05D006042 1.0e-206 724.2 759 51.8
Os03g0849600 Oryza sativa ssp. japonica HOM05D004543 ORTHO05D006042 3.0e-206 722.6 762 51.0
SHI28598 Sapria himalayana HOM05D004543 ORTHO05D006042 1.9e-205 719.9 815 49.2
AUR62025843 Chenopodium quinoa HOM05D004543 ORTHO05D006042 7.3e-205 718.0 657 56.3
ATR0561G088 Amborella trichopoda HOM05D004543 ORTHO05D006042 5.2e-203 711.8 754 51.7
Dinv04875 Davidia involucrata HOM05D004543 ORTHO05D006042 1.1e-192 677.6 529 64.5
Sc04g0000730 Simmondsia chinensis HOM05D004543 ORTHO05D006042 1.4e-187 660.6 534 63.1
TPR.G19235 Trifolium pratense HOM05D004543 ORTHO05D006042 5.4e-184 648.7 652 55.2
Rhsim08G0188800 Rhododendron simsii HOM05D004543 ORTHO05D006042 3.5e-183 646.0 527 62.2
Mapoly0003s0046 Marchantia polymorpha HOM05D004543 ORTHO05D006042 1.3e-182 644.0 750 48.0
Pp3c14_17740 Physcomitrium patens HOM05D004543 ORTHO05D006042 1.9e-176 623.6 749 46.2
HPP92_007000 Vanilla planifolia HOM05D004543 ORTHO05D006042 9.3e-176 621.3 749 47.1
AagrBONN_evm.TU.Sc2ySwM_344.2190 Anthoceros agrestis HOM05D004543 ORTHO05D006042 6.0e-175 618.6 736 45.8
Pp3c17_20170 Physcomitrium patens HOM05D004543 ORTHO05D006042 5.6e-173 612.1 741 46.2
Solyc08g006660.2 Solanum lycopersicum HOM05D004543 ORTHO05D006042 2.4e-168 596.7 537 59.8
SMO347G0349 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 6.5e-153 545.4 732 42.1
CBR_g49627 Chara braunii HOM05D004543 ORTHO05D006042 2.6e-133 480.3 607 44.6
DCAR_026221 Daucus carota HOM05D004543 ORTHO05D006042 3.0e-126 456.8 744 39.9
Sabra12G0070400 Salix brachista HOM05D004543 ORTHO05D006042 4.8e-124 449.5 384 62.5
Zm00001eb064480 Zea mays HOM05D004543 ORTHO05D006042 1.2e-103 381.7 375 54.1
Manes.14G052401 Manihot esculenta HOM05D004543 ORTHO05D006042 1.8e-102 377.9 346 56.9
PRCOL_00002621 Prasinoderma coloniale HOM05D004543 ORTHO05D006042 2.0e-101 374.4 705 34.0
Medtr3g105000 Medicago truncatula HOM05D004543 ORTHO05D006042 5.0e-97 359.8 479 45.7
MCO07G105 Micromonas commoda HOM05D004543 ORTHO05D006042 8.9e-78 295.8 743 29.2
Hma1.2p1_0140F.1_g063450 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 9.6e-72 275.8 226 59.7
Cre09.g402750 Chlamydomonas reinhardtii HOM05D004543 ORTHO05D006042 9.3e-67 259.2 837 28.0
HPP92_006979 Vanilla planifolia HOM05D004543 ORTHO05D006042 2.0e-53 214.9 529 31.9
Sc04g0000720 Simmondsia chinensis HOM05D004543 ORTHO05D006042 7.4e-48 196.4 216 52.8
Lsat_1_v5_gn_5_92440 Lactuca sativa HOM05D004543 ORTHO05D006042 1.4e-33 149.1 151 51.0
TPR.G18590 Trifolium pratense HOM05D001327 ORTHO05D002270 6.7e-33 146.7 125 58.4
Medtr7g104380 Medicago truncatula HOM05D004543 ORTHO05D006042 5.7e-32 143.7 135 58.5
Hma1.2p1_0140F.1_g063430 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 2.7e-26 124.8 215 40.0
Rhsim02G0055400 Rhododendron simsii HOM05D004543 ORTHO05D006042 6.1e-26 123.6 85 72.9
Medtr3g105005 Medicago truncatula HOM05D004543 ORTHO05D006042 5.7e-24 117.1 160 45.6
TPR.G34490 Trifolium pratense HOM05D004543 ORTHO05D006042 5.7e-24 117.1 102 55.9
PSO675G5444 Papaver somniferum HOM05D004543 ORTHO05D010954 2.0e-21 108.6 217 33.6
SEGI_01008 Sequoiadendron giganteum HOM05D004543 ORTHO05D037602 5.9e-21 107.1 114 49.1
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 1.0e-20 106.3 144 44.4
Rhsim04G0209800 Rhododendron simsii HOM05D004543 ORTHO05D006042 5.0e-20 104.0 74 70.3
SMO301G0055 Selaginella moellendorffii HOM05D004543 ORTHO05D000231 3.7e-15 87.8 265 28.7
vmacro20276 Vaccinium macrocarpon HOM05D004543 ORTHO05D037602 4.1e-14 84.3 82 56.1
TPR.G22932 Trifolium pratense HOM05D004543 ORTHO05D037602 3.5e-13 81.3 96 51.0
Manes.14G052501 Manihot esculenta HOM05D004543 ORTHO05D006042 7.7e-13 80.1 87 54.0
SMO117G0159 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 1.7e-12 79.0 98 40.8
Medtr1g076750 Medicago truncatula HOM05D004543 ORTHO05D006042 7.2e-11 73.6 79 51.9
Hma1.2p1_0140F.1_g063440 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 1.2e-10 72.8 65 53.8
Medtr6g087290 Medicago truncatula HOM05D004543 ORTHO05D006042 4.7e-10 70.9 88 44.3
Medtr0004s0190 Medicago truncatula HOM05D004543 ORTHO05D260927 6.1e-10 70.5 67 53.7
FAN06G0151 Fragaria x ananassa HOM05D004543 ORTHO05D022695 8.8e-09 66.6 55 61.8
FAN06G1316 Fragaria x ananassa HOM05D004543 ORTHO05D022695 8.8e-09 66.6 55 61.8
FAN08G3116 Fragaria x ananassa HOM05D003545 ORTHO05D004720 2.6e-08 65.1 55 61.8
SMO250G0003 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 3.4e-08 64.7 64 50.0
FvH4_7g19080 Fragaria vesca HOM05D000254 ORTHO05D022695 5.7e-08 63.9 55 60.0
Lsat_1_v5_gn_3_118241 Lactuca sativa HOM05D004543 ORTHO05D001664 2.8e-07 61.6 115 36.5
TPR.G19226 Trifolium pratense HOM05D004543 ORTHO05D006042 2.4e-06 58.5 56 55.4


User provided reference genes

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