Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p08250 Brassica napus HOM05D004183 ORTHO05D005022 0.0e+00 1318.9 720 100.0
C03p09610 Brassica napus HOM05D004183 ORTHO05D005022 0.0e+00 1268.4 719 96.1
BolC3t13450H Brassica oleracea HOM05D004183 ORTHO05D005022 0.0e+00 1254.2 711 96.1
BcaB01g05214 Brassica carinata HOM05D004183 ORTHO05D005022 0.0e+00 1232.2 720 94.0
BcaB08g36793 Brassica carinata HOM05D004183 ORTHO05D005022 0.0e+00 1182.9 728 87.9
BraA10t44272Z Brassica rapa HOM05D004183 ORTHO05D005022 0.0e+00 1170.6 729 84.1
A10p22130 Brassica napus HOM05D004183 ORTHO05D005022 0.0e+00 1170.2 729 84.1
C09p59920 Brassica napus HOM05D004183 ORTHO05D005022 0.0e+00 1169.1 728 83.7
BolC9t58828H Brassica oleracea HOM05D004183 ORTHO05D005022 0.0e+00 1159.8 731 83.2
Carub.0006s1546 Capsella rubella HOM05D004183 ORTHO05D005022 0.0e+00 1156.7 729 87.0
Sp6g26960 Schrenkiella parvula HOM05D004183 ORTHO05D005022 0.0e+00 1151.7 732 88.1
CARHR195930 Cardamine hirsuta HOM05D004183 ORTHO05D005022 0.0e+00 1138.3 732 85.9
Thhalv10012633m.g Eutrema salsugineum HOM05D004183 ORTHO05D005022 0.0e+00 1133.6 730 87.1
AL6G28330 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 0.0e+00 1130.9 731 87.0
BraA03t10145Z Brassica rapa HOM05D004183 ORTHO05D005022 0.0e+00 1116.3 727 87.5
Aa31LG11G12400 Aethionema arabicum HOM05D004183 ORTHO05D005022 1.3e-302 1042.7 760 78.7
AT5G37130 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 1.4e-296 1022.7 725 79.6
AT5G17270 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 2.7e-292 1008.4 663 85.5
THA.LOC104827224 Tarenaya hassleriana HOM05D004183 ORTHO05D005022 4.3e-290 1001.1 726 70.1
BcaC04g18812 Brassica carinata HOM05D004183 ORTHO05D005022 1.1e-274 949.9 729 73.4
AL6G28350 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 7.4e-258 894.0 657 77.8
Atru.chr3.3380 Acer truncatum HOM05D004183 ORTHO05D005022 6.7e-243 844.3 748 59.5
Duzib268G1261 Durio zibethinus HOM05D004183 ORTHO05D005022 5.7e-242 841.3 742 59.4
Gorai.002G109500 Gossypium raimondii HOM05D004183 ORTHO05D005022 1.1e-240 837.0 739 59.3
Thecc.07G183400 Theobroma cacao HOM05D004183 ORTHO05D005022 3.1e-240 835.5 746 59.0
Gohir.A01G099200 Gossypium hirsutum HOM05D004183 ORTHO05D005022 1.5e-239 833.2 746 59.0
Dinv04533 Davidia involucrata HOM05D004183 ORTHO05D005022 4.1e-232 808.5 755 55.8
Gohir.D01G083800 Gossypium hirsutum HOM05D004183 ORTHO05D005022 7.7e-231 804.3 739 57.9
TWI75G1732 Tripterygium wilfordii HOM05D004183 ORTHO05D005022 1.7e-230 803.1 753 58.0
GSVIVG01000237001 Vitis vinifera HOM05D004183 ORTHO05D005022 1.7e-230 803.1 741 57.1
MD10G1031900 Malus domestica HOM05D004183 ORTHO05D005022 1.0e-227 793.9 754 54.2
Duzib106G0093 Durio zibethinus HOM05D004183 ORTHO05D005022 2.3e-227 792.7 736 56.4
FvH4_7g02460 Fragaria vesca HOM05D004183 ORTHO05D005022 8.8e-227 790.8 743 54.9
Lalb_Chr08g0237701 Lupinus albus HOM05D004183 ORTHO05D005022 8.8e-227 790.8 749 54.9
FAN06G5080 Fragaria x ananassa HOM05D004183 ORTHO05D005022 2.0e-226 789.6 733 55.4
Ca_17037_v3 Cicer arietinum L. HOM05D004183 ORTHO05D005022 4.4e-226 788.5 752 54.9
Potri.004G080800 Populus trichocarpa HOM05D004183 ORTHO05D005022 5.7e-226 788.1 753 54.8
Glyma.04G204500 Glycine max HOM05D004183 ORTHO05D005022 2.8e-225 785.8 752 54.9
Sed0016560 Sechium edule HOM05D004183 ORTHO05D005022 1.1e-224 783.9 730 55.6
Psat5g056520 Pisum sativum HOM05D004183 ORTHO05D005022 4.1e-224 781.9 752 54.8
RcHm_v2.0_Chr1g0321111 Rosa chinensis HOM05D004183 ORTHO05D005022 3.5e-223 778.9 737 54.4
TPR.G7801 Trifolium pratense HOM05D004183 ORTHO05D005022 1.7e-222 776.5 752 55.1
MELO3C019211.2 Cucumis melo HOM05D004183 ORTHO05D005022 2.9e-222 775.8 730 55.5
CsaV3_2G035420 Cucumis sativus L. HOM05D004183 ORTHO05D005022 3.8e-222 775.4 730 55.5
Medtr3g098060 Medicago truncatula HOM05D004183 ORTHO05D005022 5.0e-222 775.0 746 54.3
CANSAT78G1267 Cannabis sativa HOM05D004183 ORTHO05D005022 8.5e-222 774.2 739 60.9
PGR102G1375 Punica granatum HOM05D004183 ORTHO05D005022 3.6e-220 768.8 738 54.2
Prupe.2G030300 Prunus persica HOM05D004183 ORTHO05D005022 6.1e-220 768.1 729 57.5
Lj1g0005856 Lotus japonicus HOM05D004183 ORTHO05D005022 1.8e-219 766.5 751 53.9
FAN03G0165 Fragaria x ananassa HOM05D004183 ORTHO05D005022 1.2e-218 763.8 745 54.1
Sc24g0002700 Simmondsia chinensis HOM05D004183 ORTHO05D005022 1.2e-218 763.8 729 56.2
Phvul.009G160200 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 6.3e-217 758.1 741 54.7
Nn5g26963 Nelumbo nucifera HOM05D004183 ORTHO05D005022 4.1e-216 755.4 751 53.1
Nitab4.5_0010834g0010 Nicotiana tabacum HOM05D004183 ORTHO05D005022 2.9e-214 749.2 750 54.8
Cc03_g10770 Coffea canephora HOM05D004183 ORTHO05D005022 9.4e-213 744.2 748 54.3
Sabra04G0053600 Salix brachista HOM05D004183 ORTHO05D005022 1.0e-211 740.7 829 49.8
ClCG06G014020 Citrullus lanatus HOM05D004183 ORTHO05D005022 2.2e-209 733.0 673 56.0
Actinidia11211 Actinidia chinensis HOM05D004183 ORTHO05D005022 6.3e-209 731.5 757 55.0
Aqoxy7G00086 Aquilegia oxysepala HOM05D004183 ORTHO05D005022 6.3e-209 731.5 748 53.7
EL10Ac8g19353 Beta vulgaris HOM05D004183 ORTHO05D005022 1.1e-208 730.7 734 54.0
Eucgr.H05055 Eucalyptus grandis HOM05D004183 ORTHO05D005022 1.3e-206 723.8 709 54.0
FAN10G3177 Fragaria x ananassa HOM05D004183 ORTHO05D005022 5.5e-205 718.4 747 51.3
Migut.N00455 Erythranthe guttata HOM05D004183 ORTHO05D005022 1.2e-204 717.2 714 52.2
Manes.10G067101 Manihot esculenta HOM05D004183 ORTHO05D005022 1.6e-204 716.8 670 56.3
Phvul.009G192300 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 2.8e-204 716.1 758 50.8
Lsat_1_v5_gn_3_54960 Lactuca sativa HOM05D004183 ORTHO05D005022 4.7e-204 715.3 715 55.1
Oeu006040.1 Olea europaea HOM05D004183 ORTHO05D005022 4.7e-204 715.3 745 51.9
HanXRQChr15g0484541 Helianthus annuus HOM05D004183 ORTHO05D005022 8.0e-204 714.5 713 52.9
CDE11G0898 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 1.4e-203 713.8 737 51.6
CSS0046717 Camellia sinensis var. sinensis HOM05D004183 ORTHO05D005022 1.2e-202 710.7 757 53.9
PSO063G6994 Papaver somniferum HOM05D004183 ORTHO05D005022 2.0e-202 709.9 744 50.9
PSO782G1025 Papaver somniferum HOM05D004183 ORTHO05D005022 8.3e-201 704.5 744 50.4
Zm00001eb096590 Zea mays HOM05D004183 ORTHO05D005022 1.4e-195 687.2 725 55.4
Haze_19348 Corylus avellana HOM05D004183 ORTHO05D005022 3.0e-195 686.0 684 53.7
Sopen07g004700 Solanum pennellii HOM05D004183 ORTHO05D005022 8.9e-195 684.5 747 52.9
Nitab4.5_0000617g0040 Nicotiana tabacum HOM05D004183 ORTHO05D005022 3.5e-191 672.5 745 52.2
ATR0810G041 Amborella trichopoda HOM05D004183 ORTHO05D005022 1.3e-190 670.6 747 48.1
Os07g0455100 Oryza sativa ssp. japonica HOM05D004183 ORTHO05D005022 5.0e-190 668.7 728 54.5
Solyc07g008760.4 Solanum lycopersicum HOM05D004183 ORTHO05D005022 9.5e-189 664.5 743 52.5
RcHm_v2.0_Chr1g0320601 Rosa chinensis HOM05D004183 ORTHO05D005022 1.6e-188 663.7 689 51.7
ECA246G4622 Erigeron canadensis HOM05D004183 ORTHO05D005022 6.2e-188 661.8 681 55.7
Rhsim03G0265100 Rhododendron simsii HOM05D004183 ORTHO05D005022 8.9e-187 657.9 769 47.6
SGA_v2.0_scaffold7G03721 Striga asiatica HOM05D004183 ORTHO05D005022 5.8e-186 655.2 725 48.8
COL.COLO4_19761 Corchorus olitorius HOM05D004183 ORTHO05D005022 1.3e-185 654.1 608 57.1
CAN.G333.6 Capsicum annuum HOM05D004183 ORTHO05D005022 1.1e-184 651.0 745 50.9
Peaxi162Scf01600g00023 Petunia axillaris HOM05D004183 ORTHO05D005022 2.4e-184 649.8 745 51.4
AUR62027369 Chenopodium quinoa HOM05D004183 ORTHO05D005022 3.0e-182 642.9 736 48.2
arahy.Tifrunner.gnm1.ann1.RUK03S Arachis hypogaea HOM05D004183 ORTHO05D005022 4.7e-180 635.6 757 47.6
arahy.Tifrunner.gnm1.ann1.4S33SI Arachis hypogaea HOM05D004183 ORTHO05D005022 6.8e-179 631.7 757 47.4
Ah.09g232030 Amaranthus hybridus HOM05D004183 ORTHO05D005022 5.8e-178 628.6 754 47.7
MSTRG.24596 Avicennia marina HOM05D004183 ORTHO05D005022 2.3e-174 616.7 748 48.9
Ciclev10033903m.g Citrus clementina HOM05D004183 ORTHO05D005022 4.0e-171 605.9 543 58.2
Ciclev10030817m.g Citrus clementina HOM05D004183 ORTHO05D005022 3.9e-166 589.3 700 49.1
CiPaw.15G184500 Carya illinoinensis HOM05D004183 ORTHO05D005022 1.2e-159 567.8 495 59.0
vmacro06007 Vaccinium macrocarpon HOM05D004183 ORTHO05D005022 5.8e-154 548.9 876 39.6
unitig_8.g5004 Utricularia gibba HOM05D004183 ORTHO05D005022 1.3e-148 531.2 686 46.9
DCAR_009033 Daucus carota HOM05D004183 ORTHO05D005022 1.1e-147 528.1 465 57.0
Ciclev10031527m.g Citrus clementina HOM05D004183 ORTHO05D005022 7.1e-144 515.4 450 59.1
VMungo1309G0357 Vigna mungo HOM05D004183 ORTHO05D005022 5.1e-134 482.6 738 39.6
AUR62031288 Chenopodium quinoa HOM05D004183 ORTHO05D005022 2.5e-133 480.3 476 53.2
Mapoly0026s0116 Marchantia polymorpha HOM05D004183 ORTHO05D005022 5.3e-131 472.6 767 42.4
HPP92_011016 Vanilla planifolia HOM05D004183 ORTHO05D005022 4.5e-122 443.0 502 47.8
SHI30096 Sapria himalayana HOM05D004183 ORTHO05D005022 1.3e-121 441.4 739 39.2
BcaB01g04945 Brassica carinata HOM05D004183 ORTHO05D005022 1.6e-119 434.5 338 82.5
VMungo1309G2786 Vigna mungo HOM05D004183 ORTHO05D005022 8.2e-116 422.2 412 54.4
AagrBONN_evm.TU.Sc2ySwM_344.1225 Anthoceros agrestis HOM05D004183 ORTHO05D005022 3.9e-110 403.3 468 46.2
Pp3c1_12830 Physcomitrium patens HOM05D004183 ORTHO05D005022 1.3e-108 398.3 760 37.6
Ciclev10033525m.g Citrus clementina HOM05D004183 ORTHO05D005022 8.5e-105 385.6 390 51.5
CARHR154510 Cardamine hirsuta HOM05D004183 ORTHO05D005022 1.2e-103 381.7 228 82.0
RcHm_v2.0_Chr1g0320041 Rosa chinensis HOM05D004183 ORTHO05D005022 1.0e-97 362.1 487 44.4
RcHm_v2.0_Chr1g0319751 Rosa chinensis HOM05D004183 ORTHO05D005022 6.1e-95 352.8 354 52.0
Hund12628 Selenicereus undatus HOM05D004183 ORTHO05D005022 3.7e-92 343.6 222 72.5
Hund27690 Selenicereus undatus HOM05D004183 ORTHO05D005022 3.7e-92 343.6 222 72.5
Cpa.g.sc178.29 Carica papaya HOM05D004183 ORTHO05D005022 5.5e-88 329.7 377 49.1
Glyma.06G161100 Glycine max HOM05D004183 ORTHO05D005022 2.2e-84 317.8 307 55.0
VMungo1309G0778 Vigna mungo HOM05D004183 ORTHO05D005022 1.4e-83 315.1 306 55.9
RcHm_v2.0_Chr1g0319801 Rosa chinensis HOM05D004183 ORTHO05D005022 5.8e-77 293.1 217 65.4
RcHm_v2.0_Chr1g0320781 Rosa chinensis HOM05D004183 ORTHO05D005022 2.4e-75 287.7 266 56.8
RcHm_v2.0_Chr1g0320901 Rosa chinensis HOM05D004183 ORTHO05D005022 3.5e-74 283.9 317 49.5
CBR_g19343 Chara braunii HOM05D004183 ORTHO05D005022 6.6e-73 279.6 521 35.5
CARHR154500 Cardamine hirsuta HOM05D004183 ORTHO05D005022 2.1e-71 274.6 193 76.7
Ciclev10033659m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.8e-70 271.6 451 38.4
Ciclev10031844m.g Citrus clementina HOM05D004183 ORTHO05D005022 5.8e-69 266.5 278 54.0
MCO15G220 Micromonas commoda HOM05D004183 ORTHO05D005022 1.3e-68 265.4 527 33.2
Cpa.g.sc178.30 Carica papaya HOM05D004183 ORTHO05D005022 3.9e-65 253.8 323 44.9
RcHm_v2.0_Chr1g0319811 Rosa chinensis HOM05D004183 ORTHO05D005022 2.1e-63 248.1 259 49.4
Cre09.g401700 Chlamydomonas reinhardtii HOM05D004183 ORTHO05D005022 4.0e-62 243.8 502 33.7
CARHR154520 Cardamine hirsuta HOM05D004183 ORTHO05D005022 6.4e-60 236.5 160 76.2
SEGI_18489 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 6.6e-57 226.5 300 43.0
Ciclev10033738m.g Citrus clementina HOM05D004183 ORTHO05D005022 8.6e-57 226.1 235 53.2
COL.COLO4_14587 Corchorus olitorius HOM05D004183 ORTHO05D005022 2.5e-56 224.6 289 47.1
AUR62031284 Chenopodium quinoa HOM05D004183 ORTHO05D005022 5.8e-53 213.4 306 40.8
PRCOL_00002789 Prasinoderma coloniale HOM05D004183 ORTHO05D005022 1.3e-52 212.2 472 32.2
SMO147G0329 Selaginella moellendorffii HOM05D004183 ORTHO05D005022 9.6e-48 196.1 378 39.4
RcHm_v2.0_Chr1g0319861 Rosa chinensis HOM05D004183 ORTHO05D005022 2.4e-38 164.9 612 25.3
SEGI_41562 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 2.4e-38 164.9 137 54.7
Hund12629 Selenicereus undatus HOM05D004183 ORTHO05D005022 3.2e-35 154.5 152 56.6
Hund27689 Selenicereus undatus HOM05D004183 ORTHO05D005022 3.2e-35 154.5 152 56.6
Ciclev10033120m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.3e-33 149.1 113 65.5
RcHm_v2.0_Chr1g0320911 Rosa chinensis HOM05D004183 ORTHO05D005022 3.3e-24 117.9 167 40.7
RcHm_v2.0_Chr1g0319761 Rosa chinensis HOM05D004183 ORTHO05D005022 9.6e-24 116.3 167 40.1
RcHm_v2.0_Chr1g0320761 Rosa chinensis HOM05D004183 ORTHO05D005022 1.4e-22 112.5 113 54.0
MBI08_g38580_MAGBIO Magnolia biondii HOM05D004183 ORTHO05D005022 1.2e-21 109.4 78 70.5
C06p19910 Brassica napus HOM05D016195 ORTHO05D033444 3.9e-17 94.4 64 75.0
BolC8t52359H Brassica oleracea HOM05D016195 ORTHO05D033444 2.5e-16 91.7 53 86.8
CDE09G0586 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 1.3e-15 89.4 102 43.1
RcHm_v2.0_Chr1g0320921 Rosa chinensis HOM05D004183 ORTHO05D005022 8.2e-15 86.7 79 53.2
RcHm_v2.0_Chr1g0319771 Rosa chinensis HOM05D004183 ORTHO05D005022 1.4e-14 85.9 79 53.2
Ciclev10032594m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.8e-14 85.5 73 58.9
BolC2t09896H Brassica oleracea HOM05D016195 ORTHO05D033444 5.3e-14 84.0 53 79.2
Cfa027322 Carpinus fangiana HOM05D004183 ORTHO05D005022 1.5e-13 82.4 528 22.5
HPP92_027571 Vanilla planifolia HOM05D004183 ORTHO05D005022 2.6e-13 81.6 70 58.6
CARHR185280 Cardamine hirsuta HOM05D004183 ORTHO05D005022 7.7e-13 80.1 44 84.1
CBR_g19342 Chara braunii HOM05D000019 ORTHO05D000002 7.7e-13 80.1 143 35.7
Psat5g100440 Pisum sativum HOM05D004183 ORTHO05D005022 1.0e-09 69.7 152 37.5
SEGI_06721 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 9.7e-08 63.2 134 31.3


User provided reference genes

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