Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p08170 Brassica napus HOM05D004201 ORTHO05D009648 2.4e-122 442.2 228 100.0
BcaB01g05228 Brassica carinata HOM05D004201 ORTHO05D009648 7.3e-103 377.5 228 87.3
BraA03t10139Z Brassica rapa HOM05D004201 ORTHO05D009648 5.3e-101 371.3 198 91.9
A03p08190 Brassica napus HOM05D004201 ORTHO05D009648 1.5e-95 353.2 228 78.1
BolC3t13435H Brassica oleracea HOM05D004201 ORTHO05D009648 2.5e-90 335.9 231 75.8
BraA03t10141Z Brassica rapa HOM05D004201 ORTHO05D009648 4.2e-82 308.5 229 71.2
BcaB01g05222 Brassica carinata HOM05D004201 ORTHO05D009648 9.3e-82 307.4 232 71.1
BcaB01g05226 Brassica carinata HOM05D004201 ORTHO05D009648 1.6e-81 306.6 231 70.6
BcaB01g05219 Brassica carinata HOM05D004201 ORTHO05D009648 2.1e-81 306.2 232 72.4
C03p09490 Brassica napus HOM05D004201 ORTHO05D009648 4.6e-81 305.1 232 72.8
A03p08180 Brassica napus HOM05D004201 ORTHO05D009648 1.1e-79 300.4 232 69.8
BcaB01g05225 Brassica carinata HOM05D004201 ORTHO05D009648 1.3e-78 297.0 233 70.0
BcaB01g05224 Brassica carinata HOM05D004201 ORTHO05D009648 6.3e-78 294.7 231 68.4
BolC3t13445H Brassica oleracea HOM05D004201 ORTHO05D009648 3.8e-75 285.4 223 70.9
BcaB01g05220 Brassica carinata HOM05D004201 ORTHO05D009648 5.0e-75 285.0 179 76.0
BcaB01g05223 Brassica carinata HOM05D004201 ORTHO05D009648 5.0e-75 285.0 179 76.0
A03p08140 Brassica napus HOM05D004201 ORTHO05D009648 1.4e-74 283.5 226 69.5
C03p09410 Brassica napus HOM05D004201 ORTHO05D009648 5.5e-74 281.6 224 70.5
BcaB01g04958 Brassica carinata HOM05D004201 ORTHO05D009648 7.2e-74 281.2 226 68.6
BcaB01g04953 Brassica carinata HOM05D004201 ORTHO05D009648 9.4e-74 280.8 230 67.0
BcaB01g05230 Brassica carinata HOM05D004201 ORTHO05D009648 3.0e-72 275.8 224 69.2
BolC3t13436H Brassica oleracea HOM05D004201 ORTHO05D009648 2.5e-71 272.7 162 87.7
A03p08200 Brassica napus HOM05D004201 ORTHO05D009648 1.3e-70 270.4 229 66.8
BcaB01g04951 Brassica carinata HOM05D004201 ORTHO05D009648 1.5e-68 263.5 228 61.4
BcaB01g04956 Brassica carinata HOM05D004201 ORTHO05D009648 3.0e-64 249.2 234 62.4
BcaB01g04955 Brassica carinata HOM05D004201 ORTHO05D009648 3.9e-64 248.8 184 69.6
BcaB01g04954 Brassica carinata HOM05D004201 ORTHO05D009648 2.6e-63 246.1 229 58.1
BcaB01g05218 Brassica carinata HOM05D004201 ORTHO05D009648 2.6e-63 246.1 198 67.7
C03p09500 Brassica napus HOM05D004201 ORTHO05D009648 2.4e-61 239.6 195 67.2
BcaB01g05221 Brassica carinata HOM05D004201 ORTHO05D009648 9.4e-58 227.6 154 74.0
BcaB01g05229 Brassica carinata HOM05D004201 ORTHO05D009648 5.2e-56 221.9 239 55.6
A03p08160 Brassica napus HOM05D004201 ORTHO05D009648 1.9e-50 203.4 232 53.9
C03p09420 Brassica napus HOM05D004201 ORTHO05D009648 6.1e-49 198.4 232 52.6
Carub.0006s1528 Capsella rubella HOM05D004201 ORTHO05D009648 1.8e-45 186.8 239 44.8
C03p09480 Brassica napus HOM05D004201 ORTHO05D009648 2.2e-43 179.9 169 62.1
Carub.0006s1532 Capsella rubella HOM05D004201 ORTHO05D009648 3.2e-42 176.0 162 55.6
AT5G17090 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 6.8e-40 168.3 158 55.1
AT5G17120 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 4.4e-39 165.6 163 50.3
AT5G17150 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 7.5e-39 164.9 163 50.9
CARHR196090 Cardamine hirsuta HOM05D004201 ORTHO05D009648 2.2e-38 163.3 158 53.2
BcaB03g13238 Brassica carinata HOM05D004201 ORTHO05D009648 1.0e-35 154.5 173 49.1
BcaB01g05217 Brassica carinata HOM05D004201 ORTHO05D009648 1.3e-35 154.1 232 43.1
C03p09430 Brassica napus HOM05D004201 ORTHO05D009648 5.0e-35 152.1 119 75.6
Carub.0006s1527 Capsella rubella HOM05D004201 ORTHO05D009648 6.6e-35 151.8 215 41.9
BcaC06g31919 Brassica carinata HOM05D004201 ORTHO05D009648 1.5e-34 150.6 163 49.1
BcaC07g38685 Brassica carinata HOM05D004201 ORTHO05D009648 1.5e-34 150.6 163 49.1
A08p33280 Brassica napus HOM05D004201 ORTHO05D009648 3.3e-34 149.4 163 49.1
C08p14870 Brassica napus HOM05D004201 ORTHO05D009648 9.5e-34 147.9 163 48.5
C09p60060 Brassica napus HOM05D004201 ORTHO05D009648 9.5e-34 147.9 170 49.4
BolC9t58841H Brassica oleracea HOM05D004201 ORTHO05D009648 9.5e-34 147.9 170 49.4
Carub.0006s1529 Capsella rubella HOM05D004201 ORTHO05D009648 9.5e-34 147.9 210 43.3
BolC8t49120H Brassica oleracea HOM05D004201 ORTHO05D009648 1.2e-33 147.5 223 42.6
BraA08t35247Z Brassica rapa HOM05D004201 ORTHO05D009648 2.8e-33 146.4 163 49.1
Aa31LG11G12620 Aethionema arabicum HOM05D004201 ORTHO05D009648 4.0e-32 142.5 174 45.4
Sp6g27080 Schrenkiella parvula HOM05D004201 ORTHO05D009648 8.9e-32 141.4 170 45.9
Aa31LG11G12560 Aethionema arabicum HOM05D004201 ORTHO05D009648 7.0e-29 131.7 173 40.5
BcaB01g04950 Brassica carinata HOM05D004201 ORTHO05D009648 1.6e-28 130.6 169 45.6
Carub.0006s1531 Capsella rubella HOM05D004201 ORTHO05D009648 2.0e-28 130.2 170 41.2
AT5G17110 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 3.5e-28 129.4 165 42.4
AL6G28150 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 5.9e-28 128.6 177 41.2
AL6G28110 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 7.8e-28 128.3 231 36.4
AL6G28160 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 1.3e-27 127.5 199 42.7
AT5G17100 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 2.5e-26 123.2 166 41.0
Aa31LG11G12550 Aethionema arabicum HOM05D004201 ORTHO05D009648 3.3e-26 122.9 154 43.5
Carub.0006s1530 Capsella rubella HOM05D004201 ORTHO05D009648 3.3e-26 122.9 235 40.0
Aa31LG11G12490 Aethionema arabicum HOM05D004201 ORTHO05D009648 5.6e-26 122.1 211 39.3
Aa31LG11G12790 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.6e-25 120.6 153 44.4
Aa31LG11G12540 Aethionema arabicum HOM05D004201 ORTHO05D009648 4.7e-25 119.0 151 39.7
Aa31LG11G12500 Aethionema arabicum HOM05D004201 ORTHO05D009648 3.1e-24 116.3 151 41.7
Aa31LG11G12510 Aethionema arabicum HOM05D004201 ORTHO05D009648 6.8e-24 115.2 151 37.1
Thhalv10015849m.g Eutrema salsugineum HOM05D004201 ORTHO05D009648 6.8e-24 115.2 231 35.1
BcaB08g36118 Brassica carinata HOM05D004201 ORTHO05D009648 4.4e-23 112.5 153 44.4
Aa31LG11G12800 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.2e-22 110.2 156 37.8
Aa31LG11G12840 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.9e-21 107.1 190 34.7
Aa31LG11G12830 Aethionema arabicum HOM05D004201 ORTHO05D009648 2.4e-21 106.7 151 38.4
BraA10t44284Z Brassica rapa HOM05D004201 ORTHO05D009648 9.2e-21 104.8 142 44.4
A10p22250 Brassica napus HOM05D004201 ORTHO05D009648 1.2e-20 104.4 142 44.4
Carub.0006s3347 Capsella rubella HOM05D004201 ORTHO05D009648 2.0e-20 103.6 193 39.9
AL3G16360 Arabidopsis lyrata HOM05D004201 ORTHO05D031360 2.7e-20 103.2 161 40.4
AL3G16370 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 2.7e-20 103.2 187 38.5
Carub.0006s3349 Capsella rubella HOM05D004201 ORTHO05D009648 7.8e-20 101.7 166 41.0
Carub.0006s3348 Capsella rubella HOM05D004201 ORTHO05D009648 1.0e-19 101.3 160 40.6
AL3G16040 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 2.3e-19 100.1 175 39.4
AL6G49220 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 8.6e-19 98.2 188 36.2
AL3G16010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.1e-18 97.8 161 41.0
Thhalv10021511m.g Eutrema salsugineum HOM05D004201 ORTHO05D011677 1.1e-18 97.8 180 36.1
Aa31LG11G12820 Aethionema arabicum HOM05D004201 ORTHO05D009648 1.5e-18 97.4 145 34.5
Aa31LG11G12530 Aethionema arabicum HOM05D004201 ORTHO05D009648 3.3e-18 96.3 173 31.8
AL6G49230 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 5.6e-18 95.5 147 41.5
Carub.0006s3346 Capsella rubella HOM05D004201 ORTHO05D009648 1.6e-17 94.0 182 36.8
C09p02940 Brassica napus HOM05D004201 ORTHO05D009648 2.1e-17 93.6 169 39.6
BcaC01g06645 Brassica carinata HOM05D004201 ORTHO05D009648 3.6e-17 92.8 156 39.7
A03p20510 Brassica napus HOM05D004201 ORTHO05D009648 3.6e-17 92.8 159 40.3
A05p30050 Brassica napus HOM05D004201 ORTHO05D042104 4.7e-17 92.4 105 49.5
BraA05t19763Z Brassica rapa HOM05D004201 ORTHO05D042104 4.7e-17 92.4 105 49.5
AL6G37010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 3.1e-16 89.7 179 36.3
AL8G28550 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 3.1e-16 89.7 179 36.3
AL304U10030 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 4.0e-16 89.4 169 34.3
BcaC05g30121 Brassica carinata HOM05D004201 ORTHO05D011677 6.8e-16 88.6 160 37.5
CARHR080560 Cardamine hirsuta HOM05D004201 ORTHO05D011677 1.2e-15 87.8 165 36.4
C05p61800 Brassica napus HOM05D004201 ORTHO05D011677 2.6e-15 86.7 181 34.3
BcaC05g30039 Brassica carinata HOM05D014826 ORTHO05D014863 4.4e-15 85.9 170 35.9
AT1G03710 Arabidopsis thaliana HOM05D004201 ORTHO05D012052 9.8e-15 84.7 163 36.2
BraA01t04445Z Brassica rapa HOM05D014826 ORTHO05D014863 9.8e-15 84.7 170 37.6
CARHR080810 Cardamine hirsuta HOM05D004201 ORTHO05D014863 9.8e-15 84.7 182 34.1
AL3G17220 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 1.7e-14 84.0 181 37.0
BcaC05g30167 Brassica carinata HOM05D004201 ORTHO05D011677 2.2e-14 83.6 183 32.8
BNapus_Darmor_BZH_scaffold_118p00220 Brassica napus HOM05D014826 ORTHO05D014863 2.2e-14 83.6 170 36.5
Carub.0003s0573 Capsella rubella HOM05D004201 ORTHO05D014863 4.9e-14 82.4 184 34.8
CARHR079820 Cardamine hirsuta HOM05D004201 ORTHO05D011677 8.3e-14 81.6 88 50.0
AL3G16060 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 1.1e-13 81.3 136 34.6
BraA09t35929Z Brassica rapa HOM05D004201 ORTHO05D009648 1.1e-13 81.3 158 39.2
Aa31LG1G23790 Aethionema arabicum HOM05D004201 ORTHO05D011677 3.2e-13 79.7 176 29.5
BcaC05g29805 Brassica carinata HOM05D014826 ORTHO05D014863 3.2e-13 79.7 177 33.3
AL1G13220 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 4.1e-13 79.3 153 35.9
AL1G13230 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 4.1e-13 79.3 153 35.3
A05p41720 Brassica napus HOM05D014826 ORTHO05D014863 4.1e-13 79.3 169 34.3
BcaB02g06909 Brassica carinata HOM05D004201 ORTHO05D012052 5.4e-13 79.0 158 33.5
BcaB08g36116 Brassica carinata HOM05D004201 ORTHO05D009648 7.1e-13 78.6 157 38.2
Aa31LG1G23650 Aethionema arabicum HOM05D004201 ORTHO05D011677 9.2e-13 78.2 155 33.5
C05p02080 Brassica napus HOM05D004201 ORTHO05D012052 9.2e-13 78.2 167 32.9
C05p60930 Brassica napus HOM05D014826 ORTHO05D014863 9.2e-13 78.2 169 33.7
BolC5t28985H Brassica oleracea HOM05D004201 ORTHO05D012052 9.2e-13 78.2 167 32.9
BolC5t34749H Brassica oleracea HOM05D014826 ORTHO05D014863 9.2e-13 78.2 169 33.7
CARHR079790 Cardamine hirsuta HOM05D004201 ORTHO05D011677 9.2e-13 78.2 84 50.0
AT4G03570 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 1.2e-12 77.8 124 37.9
AL3G17200 Arabidopsis lyrata HOM05D004201 ORTHO05D014863 1.6e-12 77.4 161 36.0
AL1G13200 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 2.7e-12 76.6 181 34.3
BraA09t35931Z Brassica rapa HOM05D004201 ORTHO05D009648 2.7e-12 76.6 74 56.8
Thhalv10008370m.g Eutrema salsugineum HOM05D004201 ORTHO05D012052 2.7e-12 76.6 173 32.4
A10p02260 Brassica napus HOM05D004201 ORTHO05D012052 4.6e-12 75.9 180 32.8
BolC5t34836H Brassica oleracea HOM05D004201 ORTHO05D011677 4.6e-12 75.9 176 33.5
BraA10t42492Z Brassica rapa HOM05D004201 ORTHO05D012052 4.6e-12 75.9 180 32.8
THA.LOC104801147 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 4.6e-12 75.9 182 32.4
THA.LOC104801148 Tarenaya hassleriana HOM05D004201 ORTHO05D012594 4.6e-12 75.9 182 32.4
AL1G13240 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 1.3e-11 74.3 178 34.3
Aa31LG1G23530 Aethionema arabicum HOM05D004201 ORTHO05D011677 2.3e-11 73.6 160 30.0
AL1G13250 Arabidopsis lyrata HOM05D004201 ORTHO05D012052 8.6e-11 71.6 214 30.4
A10p02210 Brassica napus HOM05D004201 ORTHO05D012052 8.6e-11 71.6 181 32.0
BraA05t19067Z Brassica rapa HOM05D004201 ORTHO05D011677 8.6e-11 71.6 167 34.1
BraA10t42489Z Brassica rapa HOM05D004201 ORTHO05D012052 8.6e-11 71.6 179 32.4
Aa31LG1G23660 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.1e-10 71.2 183 29.5
BraA05t22891Z Brassica rapa HOM05D014826 ORTHO05D014863 1.1e-10 71.2 151 34.4
Carub.0001s0281 Capsella rubella HOM05D004201 ORTHO05D012052 1.1e-10 71.2 155 29.0
AL6G28190 Arabidopsis lyrata HOM05D004201 ORTHO05D009648 3.3e-10 69.7 78 46.2
BcaC05g24515 Brassica carinata HOM05D004201 ORTHO05D012052 5.6e-10 68.9 146 32.2
CARHR079840 Cardamine hirsuta HOM05D004201 ORTHO05D011677 2.8e-09 66.6 170 30.6
AL1G56010 Arabidopsis lyrata HOM05D004201 ORTHO05D011677 3.6e-09 66.2 180 33.3
Aa31LG11G12520 Aethionema arabicum HOM05D004201 ORTHO05D009648 3.1e-08 63.2 73 41.1
BcaB01g02543 Brassica carinata HOM05D012310 ORTHO05D012594 6.8e-08 62.0 174 31.0
AT4G03590 Arabidopsis thaliana HOM05D004201 ORTHO05D009648 2.6e-07 60.1 161 32.3
Aa31LG1G23540 Aethionema arabicum HOM05D004201 ORTHO05D011677 1.3e-06 57.8 158 27.8
CARHR080820 Cardamine hirsuta HOM05D014826 ORTHO05D014863 4.9e-06 55.8 55 52.7


User provided reference genes

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