Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p08090 Brassica napus HOM05D005781 ORTHO05D006835 3.4e-55 218.0 105 100.0
BolC3t13430H Brassica oleracea HOM05D005781 ORTHO05D006835 2.5e-53 211.8 105 97.1
BraA03t10134Z Brassica rapa HOM05D005781 ORTHO05D006835 8.2e-49 196.8 105 93.3
BcaB01g04964 Brassica carinata HOM05D005781 ORTHO05D006835 1.8e-48 195.7 105 93.3
Sp6g27160 Schrenkiella parvula HOM05D005781 ORTHO05D006835 7.7e-47 190.3 105 88.6
BcaB01g05237 Brassica carinata HOM05D005781 ORTHO05D006835 3.8e-46 188.0 107 89.7
C03p09360 Brassica napus HOM05D005781 ORTHO05D006835 6.5e-46 187.2 109 88.1
Thhalv10015111m.g Eutrema salsugineum HOM05D005781 ORTHO05D006835 6.5e-46 187.2 105 87.6
AT5G16950 Arabidopsis thaliana HOM05D005781 ORTHO05D006835 8.8e-43 176.8 105 81.0
BcaB07g31735 Brassica carinata HOM05D005781 ORTHO05D006835 2.5e-42 175.3 104 80.8
Thhalv10022933m.g Eutrema salsugineum HOM05D005781 ORTHO05D006835 9.7e-42 173.3 105 81.9
Carub.0006s1516 Capsella rubella HOM05D005781 ORTHO05D006835 1.7e-41 172.6 109 80.7
CARHR196210 Cardamine hirsuta HOM05D005781 ORTHO05D006835 2.4e-40 168.7 107 79.4
AL6G27950 Arabidopsis lyrata HOM05D005781 ORTHO05D006835 3.1e-40 168.3 105 78.1
A09p11320 Brassica napus HOM05D005781 ORTHO05D006835 7.4e-34 147.1 93 78.5
BraA09t36770Z Brassica rapa HOM05D005781 ORTHO05D006835 7.4e-34 147.1 93 78.5
Aa31LG11G12650 Aethionema arabicum HOM05D005781 ORTHO05D006835 4.8e-33 144.4 110 66.4
C09p13330 Brassica napus HOM05D005781 ORTHO05D006835 2.6e-26 122.1 84 75.0
BolC9t54226H Brassica oleracea HOM05D005781 ORTHO05D006835 2.6e-26 122.1 84 75.0
THA.LOC104825391 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 2.2e-25 119.0 105 57.1
Atru.chr1.3778 Acer truncatum HOM05D005781 ORTHO05D006835 1.4e-24 116.3 105 58.1
Manes.01G244300 Manihot esculenta HOM05D005781 ORTHO05D006835 1.0e-22 110.2 105 56.2
PGR031G1812 Punica granatum HOM05D005781 ORTHO05D006835 2.9e-22 108.6 105 55.2
COL.COLO4_33816 Corchorus olitorius HOM05D005781 ORTHO05D006835 8.5e-22 107.1 105 54.3
Thecc.01G232600 Theobroma cacao HOM05D005781 ORTHO05D006835 1.5e-21 106.3 105 53.3
Potri.001G082000 Populus trichocarpa HOM05D005781 ORTHO05D006835 1.9e-21 105.9 105 51.4
Manes.02G161400 Manihot esculenta HOM05D005781 ORTHO05D006835 2.5e-21 105.5 105 53.3
TWI63G1301 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 3.2e-21 105.1 105 53.3
Ciclev10023034m.g Citrus clementina HOM05D005781 ORTHO05D006835 4.2e-21 104.8 105 54.3
COL.COLO4_20773 Corchorus olitorius HOM05D005781 ORTHO05D006835 4.2e-21 104.8 105 54.3
Rhsim06G0009100 Rhododendron simsii HOM05D005781 ORTHO05D006835 4.2e-21 104.8 105 53.3
Duzib138G0305 Durio zibethinus HOM05D005781 ORTHO05D006835 5.5e-21 104.4 105 52.4
Rhsim13G0061400 Rhododendron simsii HOM05D005781 ORTHO05D006835 5.5e-21 104.4 105 52.4
Gohir.D07G208300 Gossypium hirsutum HOM05D005781 ORTHO05D006835 9.4e-21 103.6 105 54.3
Hund27185 Selenicereus undatus HOM05D005781 ORTHO05D006835 1.2e-20 103.2 108 50.9
Sc01g0002510 Simmondsia chinensis HOM05D005781 ORTHO05D006835 1.2e-20 103.2 105 49.5
BcaC04g22979 Brassica carinata HOM05D005781 ORTHO05D006835 2.1e-20 102.4 49 91.8
Gohir.D08G211000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 2.1e-20 102.4 105 51.4
Gorai.004G223700 Gossypium raimondii HOM05D005781 ORTHO05D006835 2.1e-20 102.4 105 51.4
Gohir.A07G202100 Gossypium hirsutum HOM05D005781 ORTHO05D006835 3.6e-20 101.7 105 52.4
Gohir.A08G193000 Gossypium hirsutum HOM05D005781 ORTHO05D006835 3.6e-20 101.7 105 51.4
Gorai.001G235000 Gossypium raimondii HOM05D005781 ORTHO05D006835 6.1e-20 100.9 105 52.4
Cfa015971 Carpinus fangiana HOM05D005781 ORTHO05D006835 8.0e-20 100.5 103 52.4
CiPaw.06G025900 Carya illinoinensis HOM05D005781 ORTHO05D006835 8.0e-20 100.5 105 52.4
Dinv12261 Davidia involucrata HOM05D005781 ORTHO05D006835 8.0e-20 100.5 105 51.4
Ah.04g154640 Amaranthus hybridus HOM05D005781 ORTHO05D006835 1.0e-19 100.1 108 48.1
EL10Ac7g17336 Beta vulgaris HOM05D005781 ORTHO05D006835 1.4e-19 99.8 105 52.4
MD12G1213200 Malus domestica HOM05D005781 ORTHO05D006835 1.8e-19 99.4 104 51.9
MD04G1200700 Malus domestica HOM05D005781 ORTHO05D006835 3.0e-19 98.6 104 51.9
Prupe.6G320800 Prunus persica HOM05D005781 ORTHO05D006835 4.0e-19 98.2 105 51.4
BcaB01g05235 Brassica carinata HOM05D005781 ORTHO05D006835 5.2e-19 97.8 47 91.5
CANSAT54G0055 Cannabis sativa HOM05D005781 ORTHO05D006835 5.2e-19 97.8 108 49.1
Glyma.05G129800 Glycine max HOM05D005781 ORTHO05D006835 5.2e-19 97.8 105 51.4
Ca_21653_v3 Cicer arietinum L. HOM05D005781 ORTHO05D006835 8.8e-19 97.1 105 51.4
Glyma.08G084500 Glycine max HOM05D005781 ORTHO05D006835 8.8e-19 97.1 105 50.5
Oeu052918.1 Olea europaea HOM05D005781 ORTHO05D006835 1.2e-18 96.7 64 67.2
TWI38G0894 Tripterygium wilfordii HOM05D005781 ORTHO05D006835 2.6e-18 95.5 105 50.5
Lj3g0001466 Lotus japonicus HOM05D005781 ORTHO05D006835 5.7e-18 94.4 105 47.6
Lalb_Chr13g0300501 Lupinus albus HOM05D005781 ORTHO05D006835 5.7e-18 94.4 105 48.6
Sopen07g026470 Solanum pennellii HOM05D005781 ORTHO05D006835 5.7e-18 94.4 95 50.5
Carub.0003s3142 Capsella rubella HOM05D005781 ORTHO05D006835 9.8e-18 93.6 81 58.0
vmacro02893 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 1.7e-17 92.8 103 49.5
THA.LOC104825885 Tarenaya hassleriana HOM05D005781 ORTHO05D006835 2.2e-17 92.4 93 52.7
arahy.Tifrunner.gnm1.ann1.EVJW84 Arachis hypogaea HOM05D005781 ORTHO05D006835 2.8e-17 92.0 105 49.5
Lj4g0019743 Lotus japonicus HOM05D005781 ORTHO05D006835 2.8e-17 92.0 105 46.7
Lj4g0026259 Lotus japonicus HOM05D005781 ORTHO05D006835 2.8e-17 92.0 105 46.7
Atru.chr1.3777 Acer truncatum HOM05D005781 ORTHO05D006835 3.7e-17 91.7 89 56.2
Cc05_g05310 Coffea canephora HOM05D005781 ORTHO05D006835 3.7e-17 91.7 105 47.6
Eucgr.D02385 Eucalyptus grandis HOM05D005781 ORTHO05D006835 3.7e-17 91.7 106 49.1
DCAR_003312 Daucus carota HOM05D005781 ORTHO05D006835 4.8e-17 91.3 109 48.6
DCAR_022248 Daucus carota HOM05D005781 ORTHO05D006835 4.8e-17 91.3 106 50.0
ClCG05G000700 Citrullus lanatus HOM05D005781 ORTHO05D006835 8.3e-17 90.5 102 50.0
Migut.H01206 Erythranthe guttata HOM05D005781 ORTHO05D006835 8.3e-17 90.5 84 57.1
PGSC0003DMG400026192 Solanum tuberosum HOM05D005781 ORTHO05D006835 8.3e-17 90.5 95 47.4
Dinv36923 Davidia involucrata HOM05D005781 ORTHO05D006835 1.1e-16 90.1 76 53.9
Sed0023332 Sechium edule HOM05D005781 ORTHO05D006835 1.1e-16 90.1 102 50.0
Sed0027756 Sechium edule HOM05D005781 ORTHO05D006835 1.1e-16 90.1 102 50.0
Phvul.002G194100 Phaseolus vulgaris HOM05D005781 ORTHO05D006835 1.8e-16 89.4 105 46.7
MELO3C006010.2 Cucumis melo HOM05D005781 ORTHO05D006835 3.1e-16 88.6 64 60.9
Atru.chr5.698 Acer truncatum HOM05D005781 ORTHO05D006835 7.0e-16 87.4 102 49.0
CDE02G0151 Ceratophyllum demersum HOM05D005781 ORTHO05D006835 9.1e-16 87.0 105 43.8
Medtr4g115740 Medicago truncatula HOM05D005781 ORTHO05D006835 1.2e-15 86.7 105 45.7
RcHm_v2.0_Chr3g0455721 Rosa chinensis HOM05D005781 ORTHO05D006835 1.2e-15 86.7 105 47.6
CsaV3_3G007920 Cucumis sativus L. HOM05D005781 ORTHO05D006835 1.6e-15 86.3 64 59.4
Psat4g033600 Pisum sativum HOM05D005781 ORTHO05D006835 1.6e-15 86.3 105 43.8
Zm00001eb374690 Zea mays HOM05D005781 ORTHO05D006835 1.6e-15 86.3 64 53.1
MBI09_g43998_MAGBIO Magnolia biondii HOM05D005781 ORTHO05D006835 3.5e-15 85.1 104 40.4
Nn6g33491 Nelumbo nucifera HOM05D005781 ORTHO05D006835 3.5e-15 85.1 105 43.8
Zm00001eb109340 Zea mays HOM05D005781 ORTHO05D006835 3.5e-15 85.1 105 43.8
Oeu034339.1 Olea europaea HOM05D005781 ORTHO05D006835 5.9e-15 84.3 64 59.4
unitig_0.g2200 Utricularia gibba HOM05D005781 ORTHO05D006835 5.9e-15 84.3 63 60.3
Nn8g40131 Nelumbo nucifera HOM05D005781 ORTHO05D006835 7.7e-15 84.0 105 42.9
Aqoxy5G00270 Aquilegia oxysepala HOM05D005781 ORTHO05D006835 1.0e-14 83.6 104 43.3
SalBow1G0716 Salvia bowleyana HOM05D005781 ORTHO05D006835 1.0e-14 83.6 74 59.5
Cfa011814 Carpinus fangiana HOM05D005781 ORTHO05D006835 2.9e-14 82.0 105 46.7
FAN05G5419 Fragaria x ananassa HOM05D006406 ORTHO05D007883 2.9e-14 82.0 105 45.7
FAN09G0731 Fragaria x ananassa HOM05D005781 ORTHO05D006835 2.9e-14 82.0 105 45.7
FAN14G3705 Fragaria x ananassa HOM05D006406 ORTHO05D007883 2.9e-14 82.0 105 45.7
Lsat_1_v5_gn_9_14361 Lactuca sativa HOM05D005781 ORTHO05D006835 6.5e-14 80.9 106 47.2
Gorai.009G291400 Gossypium raimondii HOM05D005781 ORTHO05D006835 1.5e-13 79.7 93 45.2
Os01g0258600 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 1.5e-13 79.7 108 41.7
vmacro12515 Vaccinium macrocarpon HOM05D005781 ORTHO05D006835 1.5e-13 79.7 94 46.8
Cpa.g.c32851 Carica papaya HOM05D005781 ORTHO05D006835 1.9e-13 79.3 93 46.2
ECA247G2075 Erigeron canadensis HOM05D005781 ORTHO05D006835 2.5e-13 79.0 106 45.3
RcHm_v2.0_Chr1g0322091 Rosa chinensis HOM05D005781 ORTHO05D006835 2.5e-13 79.0 64 56.2
Sabra01G0058900 Salix brachista HOM05D005781 ORTHO05D006835 2.5e-13 79.0 93 45.2
Haze_00504 Corylus avellana HOM05D005781 ORTHO05D006835 5.5e-13 77.8 93 48.4
QL04p074672 Quercus lobata HOM05D005781 ORTHO05D006835 9.5e-13 77.0 93 49.5
Gohir.D05G278050 Gossypium hirsutum HOM05D005781 ORTHO05D006835 1.2e-12 76.6 93 44.1
HanXRQChr08g0228461 Helianthus annuus HOM05D005781 ORTHO05D006835 3.6e-12 75.1 51 70.6
arahy.Tifrunner.gnm1.ann1.V38LZ0 Arachis hypogaea HOM05D005781 ORTHO05D006835 8.0e-12 73.9 141 36.9
CSS0033648 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 1.8e-11 72.8 93 44.1
Nitab4.5_0008807g0010 Nicotiana tabacum HOM05D005781 ORTHO05D006835 1.8e-11 72.8 93 43.0
Rhsim06G0009300 Rhododendron simsii HOM05D005781 ORTHO05D006835 4.0e-11 71.6 52 61.5
Hma1.2p1_0841F.1_g227020 Hydrangea macrophylla HOM05D005781 ORTHO05D006835 6.8e-11 70.9 93 41.9
Nitab4.5_0003429g0070 Nicotiana tabacum HOM05D005781 ORTHO05D006835 6.8e-11 70.9 96 40.6
Actinidia11611 Actinidia chinensis HOM05D005781 ORTHO05D006835 2.6e-10 68.9 58 53.4
CSS0000543 Camellia sinensis var. sinensis HOM05D005781 ORTHO05D006835 2.6e-10 68.9 93 41.9
TPR.G40143 Trifolium pratense HOM05D005781 ORTHO05D006835 2.6e-10 68.9 93 41.9
Solyc07g052913.1 Solanum lycopersicum HOM05D005781 ORTHO05D006835 7.5e-10 67.4 85 41.2
Nitab4.5_0001134g0180 Nicotiana tabacum HOM05D005781 ORTHO05D006835 9.8e-10 67.0 101 38.6
Gohir.A05G276166 Gossypium hirsutum HOM05D005781 ORTHO05D006835 1.1e-08 63.5 94 38.3
Mapoly0010s0158 Marchantia polymorpha HOM05D005781 ORTHO05D006835 1.1e-08 63.5 46 56.5
Os06g0184100 Oryza sativa ssp. japonica HOM05D005781 ORTHO05D006835 1.1e-08 63.5 97 40.2
Peaxi162Scf00007g01414 Petunia axillaris HOM05D005781 ORTHO05D006835 2.4e-08 62.4 93 37.6
ATR0626G090 Amborella trichopoda HOM05D005781 ORTHO05D006835 1.2e-07 60.1 75 42.7
Medtr5g009535 Medicago truncatula HOM05D005781 ORTHO05D006835 1.6e-07 59.7 93 37.6
Haze_11591 Corylus avellana HOM05D005781 ORTHO05D006835 2.7e-07 58.9 82 43.9
Zm00001eb217150 Zea mays HOM05D000360 ORTHO05D006835 2.7e-07 58.9 52 46.2
SalBow1G0213 Salvia bowleyana HOM05D005781 ORTHO05D006835 1.3e-06 56.6 68 47.1
Zm00001eb352440 Zea mays HOM05D000360 ORTHO05D006835 1.7e-06 56.2 52 44.2
SGA_v2.0_scaffold57G20299 Striga asiatica HOM05D005781 ORTHO05D006835 2.3e-06 55.8 52 48.1
Pp3c9_710 Physcomitrium patens HOM05D005781 ORTHO05D006835 2.9e-06 55.5 47 44.7


User provided reference genes

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