Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 2.6e-79 298.5 137 100.0
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 2.6e-79 298.5 137 100.0
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 2.1e-76 288.9 137 95.6
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 4.6e-76 287.7 137 95.6
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 5.1e-75 284.3 137 94.9
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 6.6e-75 283.9 136 94.1
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 3.6e-73 278.1 135 90.4
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 2.6e-71 271.9 135 90.4
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 1.7e-70 269.2 135 87.4
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 2.2e-70 268.9 135 86.7
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 6.4e-70 267.3 135 88.1
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 5.1e-67 257.7 135 84.4
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 3.3e-66 255.0 132 84.1
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 7.9e-60 233.8 135 74.1
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 1.3e-59 233.0 134 73.9
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 1.8e-59 232.6 134 76.1
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 5.1e-59 231.1 135 73.3
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 5.1e-59 231.1 134 75.4
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 5.1e-59 231.1 134 75.4
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 8.7e-59 230.3 135 73.3
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 8.7e-59 230.3 134 76.9
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 2.5e-58 228.8 133 72.9
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 4.3e-58 228.0 134 74.6
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 5.6e-58 227.6 134 73.1
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 7.4e-58 227.3 134 74.6
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 9.6e-58 226.9 133 70.7
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 9.6e-58 226.9 134 73.1
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 1.3e-57 226.5 134 72.4
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 1.3e-57 226.5 134 71.6
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 1.3e-57 226.5 134 70.9
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 1.6e-57 226.1 137 72.3
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 1.6e-57 226.1 134 70.9
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 2.1e-57 225.7 135 72.6
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 2.1e-57 225.7 135 72.6
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 3.7e-57 224.9 134 71.6
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 6.2e-57 224.2 134 70.1
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 8.2e-57 223.8 134 71.6
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 8.2e-57 223.8 134 70.1
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 1.4e-56 223.0 134 70.9
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 1.4e-56 223.0 134 71.6
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 1.4e-56 223.0 134 69.4
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 1.8e-56 222.6 134 71.6
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 2.4e-56 222.2 134 70.1
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 2.4e-56 222.2 135 71.1
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 4.0e-56 221.5 134 68.7
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 4.0e-56 221.5 134 68.7
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 4.0e-56 221.5 134 70.1
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 4.0e-56 221.5 134 70.9
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 5.3e-56 221.1 130 71.5
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 6.9e-56 220.7 134 70.1
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 6.9e-56 220.7 134 73.1
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 9.0e-56 220.3 134 68.7
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 9.0e-56 220.3 136 69.1
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 1.5e-55 219.5 132 68.2
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 2.0e-55 219.2 132 69.7
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 2.6e-55 218.8 133 69.9
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 2.6e-55 218.8 134 68.7
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 2.6e-55 218.8 134 72.4
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 2.6e-55 218.8 133 70.7
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 3.4e-55 218.4 134 67.9
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 4.5e-55 218.0 134 66.4
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 5.8e-55 217.6 131 71.8
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 5.8e-55 217.6 137 67.9
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 5.8e-55 217.6 134 67.2
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 5.8e-55 217.6 134 67.9
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 5.8e-55 217.6 127 69.3
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 7.6e-55 217.2 134 69.4
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 7.6e-55 217.2 134 71.6
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 1.0e-54 216.9 134 68.7
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 1.0e-54 216.9 134 68.7
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 1.3e-54 216.5 134 67.2
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 1.7e-54 216.1 134 66.4
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.7e-54 216.1 134 66.4
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 1.7e-54 216.1 134 68.7
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 2.2e-54 215.7 133 69.2
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 2.9e-54 215.3 134 67.9
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 2.9e-54 215.3 134 69.4
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 2.9e-54 215.3 134 66.4
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 4.9e-54 214.5 129 69.8
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 6.5e-54 214.2 133 67.7
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 1.1e-53 213.4 134 67.9
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.1e-53 213.4 134 67.2
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 1.1e-53 213.4 134 66.4
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 2.5e-53 212.2 133 67.7
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.5e-53 212.2 134 70.1
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 2.5e-53 212.2 134 65.7
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 3.2e-53 211.8 134 64.9
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 3.2e-53 211.8 134 65.7
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 4.2e-53 211.5 130 67.7
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 5.5e-53 211.1 121 74.4
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 5.5e-53 211.1 134 67.9
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 7.1e-53 210.7 134 65.7
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 9.3e-53 210.3 133 66.2
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 1.2e-52 209.9 134 64.2
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 1.2e-52 209.9 134 65.7
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 1.2e-52 209.9 129 69.0
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 1.2e-52 209.9 135 65.2
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 1.2e-52 209.9 135 65.9
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 2.1e-52 209.1 133 66.9
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 2.1e-52 209.1 134 66.4
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 7.9e-52 207.2 134 64.9
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 2.3e-51 205.7 134 64.2
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 5.1e-51 204.5 131 64.1
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 6.7e-51 204.1 133 62.4
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 1.1e-50 203.4 126 65.1
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 1.5e-50 203.0 127 66.1
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.9e-50 202.6 121 72.7
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 2.5e-50 202.2 173 56.1
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 4.3e-50 201.4 119 73.1
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 5.7e-50 201.1 134 63.4
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 5.7e-50 201.1 129 65.9
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 1.6e-49 199.5 134 64.2
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 6.3e-49 197.6 133 61.7
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 6.3e-49 197.6 133 60.9
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 6.3e-49 197.6 121 70.2
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 1.8e-48 196.1 124 64.5
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 1.8e-48 196.1 129 63.6
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 3.1e-48 195.3 124 65.3
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 4.1e-48 194.9 134 62.7
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 6.9e-48 194.1 120 66.7
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 2.0e-47 192.6 128 63.3
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 5.9e-47 191.0 123 65.9
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 2.2e-46 189.1 132 59.1
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 5.0e-46 188.0 129 62.8
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 8.5e-46 187.2 127 63.8
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 1.1e-45 186.8 131 58.0
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 7.2e-45 184.1 134 61.2
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 1.8e-43 179.5 121 62.0
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 8.8e-43 177.2 127 59.8
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 1.5e-42 176.4 131 55.7
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.4e-40 169.9 125 60.0
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.8e-40 169.5 134 59.0
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 3.1e-40 168.7 106 67.9
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 4.1e-40 168.3 101 67.3
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 1.2e-39 166.8 131 54.2
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 1.0e-38 163.7 130 53.1
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.7e-38 162.9 130 55.4
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 3.8e-38 161.8 97 74.2
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 7.2e-37 157.5 135 58.5
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 5.7e-34 147.9 96 69.8
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 7.0e-32 141.0 97 62.9
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 2.0e-31 139.4 75 82.7
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 2.6e-31 139.0 141 44.0
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 3.5e-31 138.7 85 69.4
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 1.4e-24 116.7 73 72.6
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 7.0e-24 114.4 112 51.8
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.0e-23 112.8 69 68.1
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 6.5e-22 107.8 63 74.6
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 8.0e-20 100.9 78 59.0
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 4.0e-19 98.6 79 57.0


User provided reference genes

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