Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p07460 Brassica napus HOM05D005714 ORTHO05D006812 3.9e-180 634.8 346 100.0
BraA03t10075Z Brassica rapa HOM05D005714 ORTHO05D006812 7.3e-179 630.6 346 99.4
BraA03t10072Z Brassica rapa HOM05D005714 ORTHO05D006812 8.9e-177 623.6 346 98.6
C03p08640 Brassica napus HOM05D005714 ORTHO05D006812 8.1e-170 600.5 346 96.8
BolC3t13366H Brassica oleracea HOM05D005714 ORTHO05D006812 8.1e-170 600.5 346 96.8
BolC3t13356H Brassica oleracea HOM05D005714 ORTHO05D006812 1.8e-161 572.8 346 93.9
C03p08510 Brassica napus HOM05D005714 ORTHO05D006812 5.3e-161 571.2 346 93.9
Sp6g28230 Schrenkiella parvula HOM05D005714 ORTHO05D006812 3.5e-157 558.5 352 89.2
CARHR197420 Cardamine hirsuta HOM05D005714 ORTHO05D006812 2.4e-153 545.8 352 87.5
Thhalv10015850m.g Eutrema salsugineum HOM05D005714 ORTHO05D006812 9.0e-153 543.9 352 87.2
BcaB01g05015 Brassica carinata HOM05D005714 ORTHO05D006812 9.9e-152 540.4 333 92.5
AL6G26770 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 7.9e-149 530.8 352 85.5
AL6G26782 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 7.9e-149 530.8 352 85.5
Carub.0006s1407 Capsella rubella HOM05D005714 ORTHO05D006812 6.7e-148 527.7 352 84.7
Aa31LG11G13710 Aethionema arabicum HOM05D005714 ORTHO05D006812 2.8e-146 522.3 352 83.2
AT5G15880 Arabidopsis thaliana HOM05D005714 ORTHO05D006812 1.2e-144 516.9 352 83.5
BraA10t44382Z Brassica rapa HOM05D005714 ORTHO05D006812 1.5e-144 516.5 352 84.1
BcaB08g36870 Brassica carinata HOM05D005714 ORTHO05D006812 1.8e-140 503.1 352 81.8
BolC9t58957H Brassica oleracea HOM05D005714 ORTHO05D006812 2.7e-133 479.2 352 80.4
THA.LOC104802994 Tarenaya hassleriana HOM05D005714 ORTHO05D006812 2.0e-128 463.0 352 75.9
Thecc.04G144400 Theobroma cacao HOM05D005714 ORTHO05D006812 1.7e-106 390.2 352 64.8
COL.COLO4_03920 Corchorus olitorius HOM05D005714 ORTHO05D006812 8.5e-103 377.9 346 65.0
Cpa.g.sc179.47 Carica papaya HOM05D005714 ORTHO05D006812 3.2e-102 375.9 352 61.9
Potri.017G110300 Populus trichocarpa HOM05D005714 ORTHO05D006812 3.2e-102 375.9 353 62.6
Gohir.D11G174600 Gossypium hirsutum HOM05D005714 ORTHO05D006812 7.2e-102 374.8 353 62.3
Gorai.007G187100 Gossypium raimondii HOM05D005714 ORTHO05D006812 9.4e-102 374.4 353 62.3
Sabra17G0092200 Salix brachista HOM05D005714 ORTHO05D006812 1.2e-101 374.0 353 62.3
FvH4_6g45610 Fragaria vesca HOM05D005714 ORTHO05D006812 3.6e-101 372.5 353 62.6
CANSAT64G2721 Cannabis sativa HOM05D005714 ORTHO05D006812 3.4e-99 365.9 351 61.8
Dinv33913 Davidia involucrata HOM05D005714 ORTHO05D006812 5.7e-99 365.2 352 60.2
CiPaw.03G006400 Carya illinoinensis HOM05D005714 ORTHO05D006812 9.8e-99 364.4 352 61.6
Duzib138G1804 Durio zibethinus HOM05D005714 ORTHO05D006812 2.8e-98 362.8 352 60.5
Oeu032870.1 Olea europaea HOM05D005714 ORTHO05D006812 4.8e-98 362.1 356 61.8
Lj7A8G44 Lonicera japonica HOM05D005714 ORTHO05D006812 4.1e-97 359.0 356 63.5
MD09G1081200 Malus domestica HOM05D005714 ORTHO05D006812 4.5e-96 355.5 353 61.5
Manes.02G065100 Manihot esculenta HOM05D005714 ORTHO05D006812 7.7e-96 354.8 351 61.8
RcHm_v2.0_Chr2g0163761 Rosa chinensis HOM05D005714 ORTHO05D006812 7.7e-96 354.8 353 60.1
Eucgr.J01456 Eucalyptus grandis HOM05D005714 ORTHO05D006812 1.5e-94 350.5 355 59.4
Sed0016830 Sechium edule HOM05D005714 ORTHO05D006812 3.3e-94 349.4 351 59.5
Medtr6g016870 Medicago truncatula HOM05D005714 ORTHO05D006812 7.2e-94 348.2 357 59.1
Lalb_Chr21g0317991 Lupinus albus HOM05D005714 ORTHO05D006812 9.5e-94 347.8 357 60.2
Prupe.3G242300 Prunus persica HOM05D005714 ORTHO05D006812 1.2e-93 347.4 353 60.1
CsaV3_3G020470 Cucumis sativus L. HOM05D005714 ORTHO05D006812 1.6e-93 347.1 352 59.9
MELO3C023776.2 Cucumis melo HOM05D005714 ORTHO05D006812 2.1e-93 346.7 359 58.8
MD17G1072600 Malus domestica HOM05D005714 ORTHO05D006812 2.8e-93 346.3 353 60.9
Cfa007977 Carpinus fangiana HOM05D001801 ORTHO05D001739 3.6e-93 345.9 352 59.1
PGR042G2576 Punica granatum HOM05D005714 ORTHO05D006812 6.1e-93 345.1 352 59.7
MSTRG.2945 Avicennia marina HOM05D005714 ORTHO05D006812 1.0e-92 344.4 352 59.1
Nitab4.5_0000612g0140 Nicotiana tabacum HOM05D005714 ORTHO05D006812 1.0e-92 344.4 353 59.8
Potri.004G105400 Populus trichocarpa HOM05D005714 ORTHO05D006812 1.8e-92 343.6 353 59.8
Nn3g17645 Nelumbo nucifera HOM05D005714 ORTHO05D006812 4.0e-92 342.4 362 58.0
Atru.BG.225.p Acer truncatum HOM05D005714 ORTHO05D006812 5.2e-92 342.0 350 61.7
Actinidia36301 Actinidia chinensis HOM05D005714 ORTHO05D006812 5.2e-92 342.0 351 59.0
Peaxi162Scf00479g00037 Petunia axillaris HOM05D005714 ORTHO05D006812 6.8e-92 341.7 350 59.1
Cc07_g04960 Coffea canephora HOM05D005714 ORTHO05D006812 8.9e-92 341.3 354 59.3
Rhsim10G0064900 Rhododendron simsii HOM05D005714 ORTHO05D006812 1.5e-91 340.5 363 59.8
SalBow1G2935 Salvia bowleyana HOM05D005714 ORTHO05D006812 2.0e-91 340.1 354 57.9
SalBow1G3421 Salvia bowleyana HOM05D005714 ORTHO05D006812 2.6e-91 339.7 354 57.6
Phvul.004G049100 Phaseolus vulgaris HOM05D005714 ORTHO05D006812 4.4e-91 339.0 348 59.5
ClCG05G011990 Citrullus lanatus HOM05D005714 ORTHO05D006812 5.7e-91 338.6 367 57.5
Ca_20731_v3 Cicer arietinum L. HOM05D005714 ORTHO05D006812 1.7e-90 337.0 360 57.5
SGA_v2.0_scaffold204G41660 Striga asiatica HOM05D005714 ORTHO05D006812 2.2e-90 336.7 352 58.2
CSS0016024 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 2.8e-90 336.3 353 59.5
EL10Ac2g04627 Beta vulgaris HOM05D005714 ORTHO05D006812 3.7e-90 335.9 349 56.7
PGSC0003DMG400018763 Solanum tuberosum HOM05D005714 ORTHO05D006812 6.3e-90 335.1 350 58.0
CSS0020756 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 1.1e-89 334.3 353 59.2
Sc10g0001430 Simmondsia chinensis HOM05D005714 ORTHO05D006812 1.4e-89 334.0 351 58.7
GSVIVG01036468001 Vitis vinifera HOM05D005714 ORTHO05D006812 1.4e-89 334.0 352 56.8
Migut.H00540 Erythranthe guttata HOM05D005714 ORTHO05D006812 2.4e-89 333.2 356 57.9
Hund16108 Selenicereus undatus HOM05D005714 ORTHO05D006812 1.7e-87 327.0 366 56.6
ECA232G3066 Erigeron canadensis HOM05D005714 ORTHO05D006812 2.9e-87 326.2 350 58.3
QL02p053457 Quercus lobata HOM05D005714 ORTHO05D006812 5.0e-87 325.5 351 56.4
MBI15_g36941_MAGBIO Magnolia biondii HOM05D005714 ORTHO05D006812 6.6e-87 325.1 353 57.5
Ah.10g037360 Amaranthus hybridus HOM05D005714 ORTHO05D006812 1.9e-86 323.6 338 55.0
Nitab4.5_0003161g0010 Nicotiana tabacum HOM05D005714 ORTHO05D006812 3.3e-86 322.8 345 56.8
Sabra04G0076700 Salix brachista HOM05D005714 ORTHO05D006812 4.3e-86 322.4 423 50.4
arahy.Tifrunner.gnm1.ann1.AEQW57 Arachis hypogaea HOM05D005714 ORTHO05D006812 7.3e-86 321.6 352 59.1
PSO063G3590 Papaver somniferum HOM05D005714 ORTHO05D006812 1.2e-85 320.9 353 56.4
TPR.G9671 Trifolium pratense HOM05D005714 ORTHO05D006812 1.6e-85 320.5 356 56.2
CSS0044543 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 3.6e-85 319.3 353 57.2
CSS0047938 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 3.6e-85 319.3 353 57.2
FAN09G3422 Fragaria x ananassa HOM05D005714 ORTHO05D006812 1.8e-84 317.0 353 56.1
Aqoxy3G03832 Aquilegia oxysepala HOM05D005714 ORTHO05D006812 4.4e-83 312.4 351 55.6
TWI74G1644 Tripterygium wilfordii HOM05D005714 ORTHO05D006812 9.8e-83 311.2 353 56.1
Ciclev10012317m.g Citrus clementina HOM05D005714 ORTHO05D006812 1.1e-81 307.8 297 62.6
arahy.Tifrunner.gnm1.ann1.R8VTVZ Arachis hypogaea HOM05D005714 ORTHO05D006812 4.1e-81 305.8 374 55.3
CAN.G551.30 Capsicum annuum HOM05D005714 ORTHO05D006812 5.4e-81 305.4 353 54.7
Lj2g0024465 Lotus japonicus HOM05D005714 ORTHO05D006812 1.2e-80 304.3 338 56.2
HanXRQChr15g0490211 Helianthus annuus HOM05D005714 ORTHO05D006812 9.5e-78 294.7 349 54.7
PSO782G2399 Papaver somniferum HOM05D005714 ORTHO05D006812 4.0e-76 289.3 339 54.0
Lsat_1_v5_gn_4_175801 Lactuca sativa HOM05D005714 ORTHO05D006812 1.2e-75 287.7 291 59.5
HPP92_027404 Vanilla planifolia HOM05D005714 ORTHO05D006812 2.9e-74 283.1 351 51.6
vmacro05584 Vaccinium macrocarpon HOM05D005714 ORTHO05D006812 6.4e-74 282.0 401 49.6
CDE02G2817 Ceratophyllum demersum HOM05D005714 ORTHO05D006812 2.3e-71 273.5 381 47.2
Gohir.A11G168300 Gossypium hirsutum HOM05D005714 ORTHO05D006812 2.3e-71 273.5 252 61.5
Os09g0108400 Oryza sativa ssp. japonica HOM05D005714 ORTHO05D006812 6.8e-68 261.9 355 47.3
A10p17320 Brassica napus HOM05D000327 ORTHO05D006812 2.4e-65 253.4 225 69.8
unitig_899.g15126 Utricularia gibba HOM05D005714 ORTHO05D006812 4.4e-59 232.6 351 46.4
Actinidia18116 Actinidia chinensis HOM05D005714 ORTHO05D006812 7.6e-59 231.9 356 48.0
BcaC04g18926 Brassica carinata HOM05D005714 ORTHO05D006812 6.0e-56 222.2 319 50.2
Psat1g062640 Pisum sativum HOM05D005714 ORTHO05D006812 5.1e-55 219.2 234 56.8
Zm00001eb208920 Zea mays HOM05D005714 ORTHO05D006812 8.7e-55 218.4 329 44.1
FAN05G0119 Fragaria x ananassa HOM05D005714 ORTHO05D006812 5.8e-51 205.7 201 60.2
VMungo0464G1377 Vigna mungo HOM05D005714 ORTHO05D006812 3.8e-50 203.0 230 55.2
Glyma.19G041200 Glycine max HOM05D005714 ORTHO05D006812 6.2e-45 185.7 168 66.1
Solyc03g046260.2 Solanum lycopersicum HOM05D005714 ORTHO05D006812 9.0e-44 181.8 227 51.1
Cfa007975 Carpinus fangiana HOM05D005714 ORTHO05D006812 3.4e-43 179.9 311 42.1
C09p61160 Brassica napus HOM05D005714 ORTHO05D006812 5.8e-43 179.1 115 83.5
RcHm_v2.0_Chr2g0163701 Rosa chinensis HOM05D005714 ORTHO05D006812 6.4e-42 175.6 142 66.9
C09p61150 Brassica napus HOM05D005714 ORTHO05D006812 1.6e-40 171.0 102 91.2
TAR622G1272 Trochodendron aralioides HOM05D005714 ORTHO05D006812 2.1e-40 170.6 208 51.9
AUR62014554 Chenopodium quinoa HOM05D005714 ORTHO05D006812 2.8e-37 160.2 230 48.3
AagrBONN_evm.TU.Sc2ySwM_344.4539 Anthoceros agrestis HOM05D005714 ORTHO05D006812 1.4e-36 157.9 291 37.8
AUR62008947 Chenopodium quinoa HOM05D005714 ORTHO05D006812 2.4e-36 157.1 232 47.0
ATR0752G125 Amborella trichopoda HOM05D005714 ORTHO05D006812 9.0e-36 155.2 135 65.2
Pp3c1_6350 Physcomitrium patens HOM05D005714 ORTHO05D006812 1.1e-33 148.3 301 38.5
MD17G1072400 Malus domestica HOM05D005714 ORTHO05D006812 2.7e-32 143.7 203 49.3
BcaB07g33635 Brassica carinata HOM05D005714 ORTHO05D006812 6.0e-32 142.5 124 68.5
SMO139G0044 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 6.7e-31 139.0 288 37.8
ATR0752G036 Amborella trichopoda HOM05D005714 ORTHO05D006812 7.6e-27 125.6 223 43.0
Sopen03g009720 Solanum pennellii HOM05D005714 ORTHO05D006812 3.8e-26 123.2 96 67.7
Mapoly0066s0019 Marchantia polymorpha HOM05D005714 ORTHO05D006812 2.8e-21 107.1 368 29.9
BcaB08g36868 Brassica carinata HOM05D005714 ORTHO05D006812 2.4e-20 104.0 129 59.7
SMO145G0024 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 2.4e-20 104.0 284 34.5
RcHm_v2.0_Chr2g0163721 Rosa chinensis HOM05D005714 ORTHO05D006812 3.8e-18 96.7 71 71.8
RcHm_v2.0_Chr2g0163711 Rosa chinensis HOM05D005714 ORTHO05D006812 2.1e-16 90.9 77 63.6
Medtr3g067495 Medicago truncatula HOM05D005714 ORTHO05D006812 7.9e-16 89.0 94 53.2
BcaB01g04945 Brassica carinata HOM05D004183 ORTHO05D005022 3.9e-15 86.7 104 58.7
BolC3t18733H Brassica oleracea HOM05D005714 ORTHO05D006812 5.3e-12 76.3 46 84.8
SEGI_18448 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 5.3e-12 76.3 229 31.4
RcHm_v2.0_Chr2g0163621 Rosa chinensis HOM05D005714 ORTHO05D006812 3.4e-11 73.6 88 53.4
SEGI_16525 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 1.0e-10 72.0 100 45.0
SGA_v2.0_scaffold254G45250 Striga asiatica HOM05D005714 ORTHO05D051379 1.8e-07 61.2 46 71.7


User provided reference genes

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