Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p07300 Brassica napus HOM05D003495 ORTHO05D004159 6.3e-42 173.7 89 100.0
BraA03t10053Z Brassica rapa HOM05D003495 ORTHO05D004159 2.9e-39 164.9 84 100.0
C03p08370 Brassica napus HOM05D003495 ORTHO05D004159 5.2e-36 154.1 89 92.1
BolC3t13344H Brassica oleracea HOM05D003495 ORTHO05D004159 5.2e-36 154.1 89 92.1
BraA02t05288Z Brassica rapa HOM05D003495 ORTHO05D004159 3.8e-31 137.9 73 93.2
BcaB01g05032 Brassica carinata HOM05D003495 ORTHO05D004159 1.5e-30 136.0 71 94.4
BcaC03g18444 Brassica carinata HOM05D003495 ORTHO05D004159 1.6e-29 132.5 71 93.0
BcaNung02199 Brassica carinata HOM05D003495 ORTHO05D004159 1.6e-29 132.5 71 93.0
CARHR197650 Cardamine hirsuta HOM05D003495 ORTHO05D004159 1.6e-29 132.5 71 93.0
AL6G26520 Arabidopsis lyrata HOM05D003495 ORTHO05D004159 3.6e-29 131.3 71 91.5
AT5G15680 Arabidopsis thaliana HOM05D003495 ORTHO05D004159 3.6e-29 131.3 71 91.5
Carub.0006s1383 Capsella rubella HOM05D003495 ORTHO05D004159 3.6e-29 131.3 71 91.5
Thhalv10012410m.g Eutrema salsugineum HOM05D003495 ORTHO05D004159 3.6e-29 131.3 71 91.5
Sp6g28440 Schrenkiella parvula HOM05D003495 ORTHO05D004159 3.6e-29 131.3 71 91.5
Aa31LG11G13890 Aethionema arabicum HOM05D003495 ORTHO05D004159 8.0e-29 130.2 71 90.1
Cpa.g.sc14.256 Carica papaya HOM05D003495 ORTHO05D004159 8.0e-29 130.2 71 91.5
THA.LOC104820987 Tarenaya hassleriana HOM05D003495 ORTHO05D004159 8.0e-29 130.2 71 90.1
Atru.chr8.588 Acer truncatum HOM05D003495 ORTHO05D004159 1.0e-28 129.8 71 88.7
Hma1.2p1_0588F.1_g184640 Hydrangea macrophylla HOM05D003495 ORTHO05D004159 1.0e-28 129.8 71 88.7
Hma1.2p1_2186F.1_g316380 Hydrangea macrophylla HOM05D003495 ORTHO05D004159 1.0e-28 129.8 71 88.7
Manes.01G104801 Manihot esculenta HOM05D003495 ORTHO05D004159 1.0e-28 129.8 71 88.7
Phvul.004G045000 Phaseolus vulgaris HOM05D003495 ORTHO05D004159 1.0e-28 129.8 71 88.7
MD09G1077600 Malus domestica HOM05D003495 ORTHO05D004159 1.4e-28 129.4 71 87.3
ATR0618G126 Amborella trichopoda HOM05D003495 ORTHO05D004159 1.8e-28 129.0 71 87.3
Cfa007716 Carpinus fangiana HOM05D003495 ORTHO05D004159 1.8e-28 129.0 71 88.7
CiPaw.03G081200 Carya illinoinensis HOM05D003495 ORTHO05D004159 1.8e-28 129.0 71 88.7
Lj2g0019402 Lotus japonicus HOM05D003495 ORTHO05D004159 1.8e-28 129.0 71 88.7
QL02p063603 Quercus lobata HOM05D003495 ORTHO05D004159 1.8e-28 129.0 71 88.7
CSS0004216 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 2.3e-28 128.6 71 87.3
CSS0005441 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 2.3e-28 128.6 71 87.3
CSS0018508 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 2.3e-28 128.6 71 87.3
CANSAT64G2734 Cannabis sativa HOM05D003495 ORTHO05D004159 2.3e-28 128.6 71 87.3
CAN.G497.44 Capsicum annuum HOM05D003495 ORTHO05D004159 2.3e-28 128.6 71 87.3
Ca_20758_v3 Cicer arietinum L. HOM05D003495 ORTHO05D004159 2.3e-28 128.6 71 87.3
Ciclev10010888m.g Citrus clementina HOM05D003495 ORTHO05D004159 2.3e-28 128.6 71 87.3
Cc07_g04650 Coffea canephora HOM05D003495 ORTHO05D004159 2.3e-28 128.6 71 87.3
COL.COLO4_24181 Corchorus olitorius HOM05D003495 ORTHO05D004159 2.3e-28 128.6 71 87.3
DCAR_011000 Daucus carota HOM05D003495 ORTHO05D004159 2.3e-28 128.6 71 87.3
Duzib248G1077 Durio zibethinus HOM05D003495 ORTHO05D004159 2.3e-28 128.6 71 87.3
ECA232G2419 Erigeron canadensis HOM05D003495 ORTHO05D004159 2.3e-28 128.6 71 87.3
Glyma.11G061700 Glycine max HOM05D003495 ORTHO05D004159 2.3e-28 128.6 71 87.3
Glyma.19G037200 Glycine max HOM05D003495 ORTHO05D004159 2.3e-28 128.6 71 87.3
Gohir.A03G138900 Gossypium hirsutum HOM05D003495 ORTHO05D004159 2.3e-28 128.6 75 84.0
Gohir.D02G161860 Gossypium hirsutum HOM05D003495 ORTHO05D004159 2.3e-28 128.6 75 84.0
Gorai.005G181800 Gossypium raimondii HOM05D003495 ORTHO05D004159 2.3e-28 128.6 75 84.0
HanXRQChr15g0464911 Helianthus annuus HOM05D003495 ORTHO05D004159 2.3e-28 128.6 71 87.3
Lsat_1_v5_gn_4_173941 Lactuca sativa HOM05D003495 ORTHO05D004159 2.3e-28 128.6 71 87.3
Lj4A126T67 Lonicera japonica HOM05D003495 ORTHO05D004159 2.3e-28 128.6 71 87.3
Medtr6g016215 Medicago truncatula HOM05D003495 ORTHO05D004159 2.3e-28 128.6 71 87.3
Nitab4.5_0002171g0110 Nicotiana tabacum HOM05D003495 ORTHO05D004159 2.3e-28 128.6 71 87.3
Nitab4.5_0002978g0060 Nicotiana tabacum HOM05D003495 ORTHO05D004159 2.3e-28 128.6 71 87.3
Oeu032838.1 Olea europaea HOM05D003495 ORTHO05D004159 2.3e-28 128.6 71 87.3
PSO063G7059 Papaver somniferum HOM05D003495 ORTHO05D004159 2.3e-28 128.6 71 87.3
Psat1g064160 Pisum sativum HOM05D003495 ORTHO05D004159 2.3e-28 128.6 71 87.3
Solyc02g089370.2 Solanum lycopersicum HOM05D003495 ORTHO05D004159 2.3e-28 128.6 71 87.3
Sopen02g034150 Solanum pennellii HOM05D003495 ORTHO05D004159 2.3e-28 128.6 71 87.3
Thecc.02G251800 Theobroma cacao HOM05D003495 ORTHO05D004159 2.3e-28 128.6 71 87.3
TPR.G15949 Trifolium pratense HOM05D003495 ORTHO05D004159 2.3e-28 128.6 71 87.3
TWI60G0296 Tripterygium wilfordii HOM05D003495 ORTHO05D004159 2.3e-28 128.6 71 87.3
GSVIVG01036514001 Vitis vinifera HOM05D003495 ORTHO05D004159 2.3e-28 128.6 71 87.3
MD17G1067900 Malus domestica HOM05D003495 ORTHO05D004159 3.0e-28 128.3 71 85.9
Prupe.3G246500 Prunus persica HOM05D003495 ORTHO05D004159 3.0e-28 128.3 71 85.9
PGR004G1253 Punica granatum HOM05D003495 ORTHO05D004159 3.0e-28 128.3 71 85.9
Sed0005421 Sechium edule HOM05D003495 ORTHO05D004159 3.0e-28 128.3 70 88.6
Actinidia18095 Actinidia chinensis HOM05D003495 ORTHO05D004159 5.2e-28 127.5 71 85.9
Actinidia36276 Actinidia chinensis HOM05D003495 ORTHO05D004159 5.2e-28 127.5 71 85.9
Aqoxy5G03432 Aquilegia oxysepala HOM05D003495 ORTHO05D004159 5.2e-28 127.5 71 85.9
arahy.Tifrunner.gnm1.ann1.AQF1TQ Arachis hypogaea HOM05D003495 ORTHO05D004159 5.2e-28 127.5 71 85.9
arahy.Tifrunner.gnm1.ann1.BVET7T Arachis hypogaea HOM05D003495 ORTHO05D004159 5.2e-28 127.5 71 85.9
vmacro05604 Vaccinium macrocarpon HOM05D003495 ORTHO05D004159 5.2e-28 127.5 71 85.9
ClCG11G005050 Citrullus lanatus HOM05D003495 ORTHO05D004159 6.7e-28 127.1 75 84.0
MELO3C022060.2 Cucumis melo HOM05D003495 ORTHO05D004159 6.7e-28 127.1 75 84.0
CsaV3_5G038800 Cucumis sativus L. HOM05D003495 ORTHO05D004159 6.7e-28 127.1 75 84.0
Migut.K00878 Erythranthe guttata HOM05D003495 ORTHO05D004159 6.7e-28 127.1 71 85.9
Lalb_Chr02g0158651 Lupinus albus HOM05D003495 ORTHO05D004159 6.7e-28 127.1 71 85.9
Sed0015478 Sechium edule HOM05D003495 ORTHO05D004159 6.7e-28 127.1 75 84.0
SGA_v2.0_scaffold148G36460 Striga asiatica HOM05D003495 ORTHO05D004159 6.7e-28 127.1 71 85.9
THA.LOC104802983 Tarenaya hassleriana HOM05D003495 ORTHO05D004159 6.7e-28 127.1 71 87.3
Eucgr.I02084 Eucalyptus grandis HOM05D003495 ORTHO05D004159 8.8e-28 126.7 71 84.5
FvH4_6g46050 Fragaria vesca HOM05D003495 ORTHO05D004159 8.8e-28 126.7 71 84.5
FAN09G4792 Fragaria x ananassa HOM05D003495 ORTHO05D004159 8.8e-28 126.7 71 84.5
FAN14G1484 Fragaria x ananassa HOM05D003495 ORTHO05D004159 8.8e-28 126.7 71 84.5
RcHm_v2.0_Chr2g0164371 Rosa chinensis HOM05D003495 ORTHO05D004159 8.8e-28 126.7 71 84.5
TAR374G0385 Trochodendron aralioides HOM05D003495 ORTHO05D004159 8.8e-28 126.7 71 85.9
TAR622G0597 Trochodendron aralioides HOM05D003495 ORTHO05D004159 8.8e-28 126.7 71 85.9
EL10Ac6g14290 Beta vulgaris HOM05D003495 ORTHO05D004159 1.2e-27 126.3 71 85.9
AUR62002798 Chenopodium quinoa HOM05D003495 ORTHO05D004159 1.2e-27 126.3 71 85.9
AUR62014105 Chenopodium quinoa HOM05D003495 ORTHO05D004159 1.2e-27 126.3 71 85.9
Nitab4.5_0000154g0080 Nicotiana tabacum HOM05D003495 ORTHO05D004159 1.2e-27 126.3 71 87.3
Nitab4.5_0001397g0040 Nicotiana tabacum HOM05D003495 ORTHO05D004159 1.2e-27 126.3 71 87.3
Oeu062191.1 Olea europaea HOM05D003495 ORTHO05D004159 1.2e-27 126.3 71 85.9
Hund25028 Selenicereus undatus HOM05D003495 ORTHO05D004159 1.2e-27 126.3 71 85.9
HPP92_025566 Vanilla planifolia HOM05D003495 ORTHO05D004159 1.2e-27 126.3 71 85.9
Nn7g37976 Nelumbo nucifera HOM05D003495 ORTHO05D004159 1.5e-27 125.9 71 84.5
VMungo0464G0617 Vigna mungo HOM05D003495 ORTHO05D004159 1.5e-27 125.9 68 89.7
Ah.02g128180 Amaranthus hybridus HOM05D003495 ORTHO05D004159 2.6e-27 125.2 71 84.5
HanXRQChr15g0489851 Helianthus annuus HOM05D003495 ORTHO05D004159 2.6e-27 125.2 71 85.9
PSO063G5616 Papaver somniferum HOM05D003495 ORTHO05D004159 3.3e-27 124.8 69 87.0
Sc04g0005950 Simmondsia chinensis HOM05D003495 ORTHO05D004159 3.3e-27 124.8 71 83.1
Duzib268G1709 Durio zibethinus HOM05D003495 ORTHO05D004159 5.7e-27 124.0 71 83.1
MSTRG.3380 Avicennia marina HOM05D003495 ORTHO05D004159 7.5e-27 123.6 71 83.1
SHI33612 Sapria himalayana HOM05D003495 ORTHO05D004159 7.5e-27 123.6 72 86.1
unitig_748.g7268 Utricularia gibba HOM05D003495 ORTHO05D004159 7.5e-27 123.6 69 85.5
Peaxi162Scf00479g01011 Petunia axillaris HOM05D003495 ORTHO05D004159 1.7e-26 122.5 68 88.2
PGSC0003DMG400019864 Solanum tuberosum HOM05D003495 ORTHO05D004159 2.2e-26 122.1 68 88.2
Solyc03g046450.3 Solanum lycopersicum HOM05D003495 ORTHO05D004159 1.1e-25 119.8 67 88.1
Sopen03g010670 Solanum pennellii HOM05D003495 ORTHO05D004159 1.1e-25 119.8 67 88.1
SMO351G0561 Selaginella moellendorffii HOM05D003495 ORTHO05D004159 1.8e-25 119.0 71 81.7
CAN.G563.4 Capsicum annuum HOM05D003495 ORTHO05D004159 3.1e-25 118.2 67 85.1
Lsat_1_v5_gn_2_85980 Lactuca sativa HOM05D003495 ORTHO05D004159 9.1e-25 116.7 68 79.4
Os02g0830801 Oryza sativa ssp. japonica HOM05D003495 ORTHO05D004159 1.2e-24 116.3 71 77.5
Pp3c3_1860 Physcomitrium patens HOM05D003495 ORTHO05D004159 1.2e-24 116.3 78 70.5
Pp3c12_3160 Physcomitrium patens HOM05D003495 ORTHO05D004159 1.6e-24 115.9 71 77.5
Mapoly0124s0011 Marchantia polymorpha HOM05D003495 ORTHO05D004159 4.5e-24 114.4 71 78.9
Zm00001eb190620 Zea mays HOM05D003495 ORTHO05D004159 4.5e-24 114.4 71 76.1
Pp3c13_5370 Physcomitrium patens HOM05D003495 ORTHO05D004159 7.7e-24 113.6 71 76.1
ECA238G4655 Erigeron canadensis HOM05D003495 ORTHO05D004159 1.6e-21 105.9 67 74.6
FAN05G3267 Fragaria x ananassa HOM05D003495 ORTHO05D004159 2.1e-21 105.5 107 54.2
FAN02G1990 Fragaria x ananassa HOM05D003495 ORTHO05D004159 8.0e-21 103.6 115 51.3
HanXRQChr14g0447961 Helianthus annuus HOM05D003495 ORTHO05D004159 3.0e-20 101.7 68 70.6
Potri.017G106100 Populus trichocarpa HOM05D003495 ORTHO05D004159 3.5e-16 88.2 75 68.0
Haze_14359 Corylus avellana HOM05D003495 ORTHO05D004159 7.2e-14 80.5 46 78.3
CSS0011723 Camellia sinensis var. sinensis HOM05D003495 ORTHO05D004159 3.6e-13 78.2 40 87.5
Peaxi162Scf00020g02133 Petunia axillaris HOM05D003495 ORTHO05D004159 3.6e-13 78.2 42 81.0
PGSC0003DMG400025596 Solanum tuberosum HOM05D000072 ORTHO05D002334 4.7e-13 77.8 39 87.2
Gorai.002G166500 Gossypium raimondii HOM05D003495 ORTHO05D004159 1.5e-11 72.8 40 80.0
SEGI_02656 Sequoiadendron giganteum HOM05D003495 ORTHO05D004159 1.5e-11 72.8 40 82.5
CBR_g31516 Chara braunii HOM05D003495 ORTHO05D004159 2.6e-11 72.0 69 52.2
Haze_14360 Corylus avellana HOM05D003495 ORTHO05D004159 1.9e-06 55.8 33 84.8


User provided reference genes

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