Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p06300 Brassica napus HOM05D004735 ORTHO05D005243 2.7e-126 455.3 219 100.0
BraA03t09961Z Brassica rapa HOM05D004735 ORTHO05D005243 2.7e-126 455.3 219 100.0
BolC3t13230H Brassica oleracea HOM05D004735 ORTHO05D005243 2.2e-104 382.5 223 87.4
C03p07280 Brassica napus HOM05D004735 ORTHO05D005243 1.1e-103 380.2 223 87.0
BcaB01g05325 Brassica carinata HOM05D004735 ORTHO05D005243 5.8e-89 331.3 189 88.4
Sp6g30050 Schrenkiella parvula HOM05D004735 ORTHO05D005243 7.6e-89 330.9 233 76.8
Thhalv10012594m.g Eutrema salsugineum HOM05D004735 ORTHO05D005243 9.3e-87 323.9 233 74.2
A10p24440 Brassica napus HOM05D004735 ORTHO05D005243 1.6e-83 313.2 228 75.0
BraA10t44508Z Brassica rapa HOM05D000139 ORTHO05D005243 1.6e-83 313.2 228 75.0
BcaC04g19065 Brassica carinata HOM05D004735 ORTHO05D005243 1.5e-81 306.6 232 73.3
BolC9t59152H Brassica oleracea HOM05D004735 ORTHO05D005243 1.5e-81 306.6 232 73.3
C09p63170 Brassica napus HOM05D004735 ORTHO05D005243 1.4e-79 300.1 232 72.0
Carub.0006s1214 Capsella rubella HOM05D004735 ORTHO05D005243 3.3e-76 288.9 233 67.4
AL6G24610 Arabidopsis lyrata HOM05D004735 ORTHO05D005243 4.3e-76 288.5 234 68.8
AT5G13950 Arabidopsis thaliana HOM05D004735 ORTHO05D005243 4.5e-73 278.5 233 67.0
CARHR199450 Cardamine hirsuta HOM05D004735 ORTHO05D005243 3.2e-63 245.7 233 58.8
Aa31LG11G15430 Aethionema arabicum HOM05D004735 ORTHO05D005243 8.7e-61 237.7 233 58.8
THA.LOC104802362 Tarenaya hassleriana HOM05D004735 ORTHO05D005243 9.3e-55 217.6 230 52.6
THA.LOC104821139 Tarenaya hassleriana HOM05D004735 ORTHO05D005243 1.8e-42 176.8 232 46.1
Thecc.04G048500 Theobroma cacao HOM05D004735 ORTHO05D005243 6.3e-27 125.2 241 38.6
Duzib147G0188 Durio zibethinus HOM05D004735 ORTHO05D005243 1.4e-26 124.0 242 36.4
Duzib187G1028 Durio zibethinus HOM05D004735 ORTHO05D005243 1.8e-26 123.6 241 36.1
Duzib264G0086 Durio zibethinus HOM05D004735 ORTHO05D005243 1.2e-25 120.9 234 38.5
COL.COLO4_13380 Corchorus olitorius HOM05D004735 ORTHO05D005243 4.5e-25 119.0 239 37.7
QL02p069299 Quercus lobata HOM05D004735 ORTHO05D005243 2.9e-24 116.3 233 38.2
TWI32G0607 Tripterygium wilfordii HOM05D004735 ORTHO05D005243 5.0e-24 115.5 231 35.1
Cpa.g.sc70.59 Carica papaya HOM05D004735 ORTHO05D005243 7.2e-23 111.7 231 36.8
MD17G1006400 Malus domestica HOM05D004735 ORTHO05D005243 7.2e-23 111.7 234 36.8
Sabra02G0181300 Salix brachista HOM05D004735 ORTHO05D005243 7.2e-23 111.7 248 35.5
Ciclev10014280m.g Citrus clementina HOM05D004735 ORTHO05D005243 3.6e-22 109.4 231 34.6
Cfa007143 Carpinus fangiana HOM05D004735 ORTHO05D005243 8.0e-22 108.2 230 35.7
Manes.04G093600 Manihot esculenta HOM05D004735 ORTHO05D005243 1.0e-21 107.8 231 35.5
Potri.014G144100 Populus trichocarpa HOM05D004735 ORTHO05D005243 4.0e-21 105.9 247 34.0
Atru.chr6.2700 Acer truncatum HOM05D004735 ORTHO05D005243 6.8e-21 105.1 227 34.8
CiPaw.03G001400 Carya illinoinensis HOM05D004735 ORTHO05D005243 8.8e-21 104.8 231 34.6
Sabra14G0108800 Salix brachista HOM05D004735 ORTHO05D005243 1.2e-20 104.4 252 33.7
Potri.002G237800 Populus trichocarpa HOM05D004735 ORTHO05D005243 1.5e-20 104.0 247 32.8
Prupe.3G314000 Prunus persica HOM05D004735 ORTHO05D005243 2.6e-20 103.2 234 35.5
Gorai.007G073000 Gossypium raimondii HOM05D004735 ORTHO05D005243 1.3e-19 100.9 242 33.1
Haze_14980 Corylus avellana HOM05D004735 ORTHO05D005243 1.7e-19 100.5 230 34.3
Eucgr.G01927 Eucalyptus grandis HOM05D004735 ORTHO05D005243 2.2e-19 100.1 237 30.8
FAN02G4354 Fragaria x ananassa HOM05D004735 ORTHO05D005243 2.8e-19 99.8 233 34.3
MD09G1002200 Malus domestica HOM05D004735 ORTHO05D005243 2.8e-19 99.8 224 34.4
Gohir.D11G068200 Gossypium hirsutum HOM05D004735 ORTHO05D005243 3.7e-19 99.4 242 33.1
Psat3g093080 Pisum sativum HOM05D004735 ORTHO05D005243 1.1e-18 97.8 230 32.6
FvH4_6g54340 Fragaria vesca HOM05D004735 ORTHO05D005243 1.8e-18 97.1 233 33.9
FAN09G0836 Fragaria x ananassa HOM05D004735 ORTHO05D005243 1.8e-18 97.1 233 33.9
FAN14G4878 Fragaria x ananassa HOM05D004735 ORTHO05D005243 1.8e-18 97.1 233 33.9
TWI60G1686 Tripterygium wilfordii HOM05D004735 ORTHO05D005243 3.1e-18 96.3 232 34.9
Dinv25616 Davidia involucrata HOM05D004735 ORTHO05D005243 5.4e-18 95.5 232 33.2
FAN05G2416 Fragaria x ananassa HOM05D004735 ORTHO05D005243 7.0e-18 95.1 231 33.8
Medtr6g033235 Medicago truncatula HOM05D004735 ORTHO05D005243 2.0e-17 93.6 242 29.8
Lj1g0021966 Lotus japonicus HOM05D004735 ORTHO05D005243 4.5e-17 92.4 238 31.1
RcHm_v2.0_Chr2g0176561 Rosa chinensis HOM05D004735 ORTHO05D005243 5.9e-17 92.0 234 33.8
Manes.11G076100 Manihot esculenta HOM05D004735 ORTHO05D005243 2.2e-16 90.1 236 34.3
VMungo0464G0888 Vigna mungo HOM05D004735 ORTHO05D005243 2.2e-16 90.1 256 27.7
CiPaw.04G001000 Carya illinoinensis HOM05D004735 ORTHO05D005243 2.9e-16 89.7 230 32.6
Glyma.02G066700 Glycine max HOM05D004735 ORTHO05D005243 2.9e-16 89.7 226 31.4
Lj2g0010549 Lotus japonicus HOM05D004735 ORTHO05D005243 3.8e-16 89.4 245 31.4
CANSAT64G0702 Cannabis sativa HOM05D004735 ORTHO05D005243 1.1e-15 87.8 239 32.6
Gorai.011G088500 Gossypium raimondii HOM05D004735 ORTHO05D005243 1.5e-15 87.4 239 31.8
Gohir.D10G081300 Gossypium hirsutum HOM05D004735 ORTHO05D005243 1.9e-15 87.0 239 31.4
EL10Ac3g06356 Beta vulgaris HOM05D004735 ORTHO05D005243 4.2e-15 85.9 228 28.9
Glyma.16G147800 Glycine max HOM05D004735 ORTHO05D005243 5.5e-15 85.5 269 29.0
Oeu035383.1 Olea europaea HOM05D004735 ORTHO05D005243 5.5e-15 85.5 217 30.4
Gohir.A10G069900 Gossypium hirsutum HOM05D004735 ORTHO05D005243 1.2e-14 84.3 239 31.0
Lalb_Chr22g0359831 Lupinus albus HOM05D004735 ORTHO05D005243 2.1e-14 83.6 233 28.8
Nitab4.5_0002172g0170 Nicotiana tabacum HOM05D004735 ORTHO05D005243 2.8e-14 83.2 235 29.8
Psat0s787g0080 Pisum sativum HOM05D004735 ORTHO05D005243 3.6e-14 82.8 238 29.8
Ca_08203_v3 Cicer arietinum L. HOM05D004735 ORTHO05D005243 4.7e-14 82.4 233 30.9
AUR62030086 Chenopodium quinoa HOM05D004735 ORTHO05D005243 6.1e-14 82.0 228 29.4
Cc07_g01360 Coffea canephora HOM05D004735 ORTHO05D005243 1.0e-13 81.3 212 28.8
CSS0022550 Camellia sinensis var. sinensis HOM05D004735 ORTHO05D005243 1.4e-13 80.9 240 29.6
MELO3C005100.2 Cucumis melo HOM05D004735 ORTHO05D005243 1.4e-13 80.9 237 31.2
Hma1.2p1_0421F.1_g149860 Hydrangea macrophylla HOM05D004735 ORTHO05D005243 1.4e-13 80.9 230 32.2
CsaV3_5G024940 Cucumis sativus L. HOM05D004735 ORTHO05D005243 3.0e-13 79.7 237 30.8
ClCG01G007860 Citrullus lanatus HOM05D004735 ORTHO05D005243 4.0e-13 79.3 236 32.6
AUR62038220 Chenopodium quinoa HOM05D004735 ORTHO05D005243 6.8e-13 78.6 228 29.4
Medtr7g084170 Medicago truncatula HOM05D004735 ORTHO05D005243 6.8e-13 78.6 230 29.1
Phvul.004G069600 Phaseolus vulgaris HOM05D004735 ORTHO05D005243 1.2e-12 77.8 164 33.5
TPR.G15417 Trifolium pratense HOM05D004735 ORTHO05D005243 1.2e-12 77.8 109 41.3
Nitab4.5_0000519g0300 Nicotiana tabacum HOM05D004735 ORTHO05D005243 1.5e-12 77.4 232 30.2
arahy.Tifrunner.gnm1.ann1.X964XN Arachis hypogaea HOM05D004735 ORTHO05D005243 3.4e-12 76.3 242 27.3
arahy.Tifrunner.gnm1.ann1.HAHJ6R Arachis hypogaea HOM05D004735 ORTHO05D005243 7.5e-12 75.1 242 27.3
Sed0022562 Sechium edule HOM05D004735 ORTHO05D005243 1.7e-11 73.9 233 30.5
Sc03g0005270 Simmondsia chinensis HOM05D004735 ORTHO05D005243 2.2e-11 73.6 230 30.9
TAR629G0422 Trochodendron aralioides HOM05D004735 ORTHO05D005243 2.2e-11 73.6 238 30.7
Ca_16589_v3 Cicer arietinum L. HOM05D004735 ORTHO05D005243 4.9e-11 72.4 240 25.8
SalBow4G2972 Salvia bowleyana HOM05D004735 ORTHO05D005243 1.4e-10 70.9 234 30.8
Nn4g22117 Nelumbo nucifera HOM05D004735 ORTHO05D005243 1.8e-10 70.5 210 29.0
Actinidia37716 Actinidia chinensis HOM05D004735 ORTHO05D005243 2.4e-10 70.1 232 30.6
TPR.G30897 Trifolium pratense HOM05D004735 ORTHO05D005243 2.4e-10 70.1 254 28.0
Hund12196 Selenicereus undatus HOM05D004735 ORTHO05D005243 1.6e-09 67.4 232 27.2
CAN.G473.160 Capsicum annuum HOM05D004735 ORTHO05D005243 1.0e-08 64.7 231 28.1
Lalb_Chr02g0156851 Lupinus albus HOM05D004735 ORTHO05D005243 1.7e-08 63.9 237 26.6
Dinv33274 Davidia involucrata HOM05D004735 ORTHO05D005243 5.6e-07 58.9 154 31.2


User provided reference genes

Program Settings