Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p05990 Brassica napus HOM05D003972 ORTHO05D004609 5.4e-128 461.1 245 100.0
BraA03t09936Z Brassica rapa HOM05D003972 ORTHO05D004609 1.7e-126 456.1 245 98.8
BolC9t59206H Brassica oleracea HOM05D003972 ORTHO05D004609 1.5e-122 443.0 245 96.3
BcaC04g19115 Brassica carinata HOM05D003972 ORTHO05D004609 1.3e-121 439.9 245 94.7
Sp6g30570 Schrenkiella parvula HOM05D003972 ORTHO05D004609 1.7e-121 439.5 245 95.1
C09p63620 Brassica napus HOM05D003972 ORTHO05D004609 2.9e-121 438.7 245 95.1
BraA10t44544Z Brassica rapa HOM05D003972 ORTHO05D004609 3.8e-121 438.3 245 94.7
Thhalv10014516m.g Eutrema salsugineum HOM05D003972 ORTHO05D004609 6.4e-121 437.6 245 93.9
A10p24800 Brassica napus HOM05D003972 ORTHO05D004609 2.4e-120 435.6 245 94.7
BcaNung01885 Brassica carinata HOM05D003972 ORTHO05D004609 1.8e-118 429.5 245 93.5
C03p07030 Brassica napus HOM05D003972 ORTHO05D004609 1.8e-118 429.5 247 94.3
BolC3t13201H Brassica oleracea HOM05D003972 ORTHO05D004609 1.8e-118 429.5 247 94.3
A02p01940 Brassica napus HOM05D003972 ORTHO05D004609 1.6e-116 422.9 245 92.2
BraA02t05167Z Brassica rapa HOM05D003972 ORTHO05D004609 1.6e-116 422.9 245 92.2
BcaNung01153 Brassica carinata HOM05D003972 ORTHO05D004609 9.9e-114 413.7 246 90.7
BolC2t06557H Brassica oleracea HOM05D003972 ORTHO05D004609 9.9e-114 413.7 246 90.7
Carub.0006s1161 Capsella rubella HOM05D003972 ORTHO05D004609 1.7e-113 412.9 245 88.6
BcaB01g05358 Brassica carinata HOM05D003972 ORTHO05D004609 8.4e-113 410.6 251 90.0
AL6G24070 Arabidopsis lyrata HOM05D003972 ORTHO05D004609 9.3e-112 407.1 245 87.3
CARHR199980 Cardamine hirsuta HOM05D003972 ORTHO05D004609 1.6e-108 396.4 245 86.1
AT5G13450 Arabidopsis thaliana HOM05D003972 ORTHO05D004609 1.8e-107 392.9 243 85.6
Aa31LG3G15250 Aethionema arabicum HOM05D003972 ORTHO05D004609 1.1e-104 383.6 261 78.2
Aa31LG5G18610 Aethionema arabicum HOM05D003972 ORTHO05D004609 1.3e-97 360.1 265 75.1
THA.LOC104809854 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 1.1e-83 313.9 246 65.0
THA.LOC104819071 Tarenaya hassleriana HOM05D003972 ORTHO05D004609 5.3e-83 311.6 244 66.8
Thecc.01G411300 Theobroma cacao HOM05D003972 ORTHO05D004609 3.7e-76 288.9 246 62.6
Atru.chr11.2659 Acer truncatum HOM05D003972 ORTHO05D004609 2.4e-75 286.2 245 62.4
Manes.10G143400 Manihot esculenta HOM05D003972 ORTHO05D004609 3.5e-74 282.3 250 60.0
PGR044G2681 Punica granatum HOM05D003972 ORTHO05D004609 1.5e-72 276.9 246 59.3
Ciclev10032620m.g Citrus clementina HOM05D003972 ORTHO05D004609 4.2e-72 275.4 246 60.6
Nn2g15387 Nelumbo nucifera HOM05D003972 ORTHO05D004609 5.5e-72 275.0 245 60.0
MD02G1312800 Malus domestica HOM05D003972 ORTHO05D004609 1.6e-71 273.5 253 59.7
Gohir.D12G096966 Gossypium hirsutum HOM05D003972 ORTHO05D004609 2.1e-71 273.1 247 59.5
Glyma.15G273900 Glycine max HOM05D003972 ORTHO05D004609 2.7e-71 272.7 246 58.9
Hund14179 Selenicereus undatus HOM05D003972 ORTHO05D004609 2.7e-71 272.7 244 59.4
TWI09G1021 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 2.7e-71 272.7 251 59.4
Rhsim07G0055300 Rhododendron simsii HOM05D003972 ORTHO05D004609 3.6e-71 272.3 247 57.5
Sed0017110 Sechium edule HOM05D003972 ORTHO05D004609 3.6e-71 272.3 251 59.0
Sopen01g034180 Solanum pennellii HOM05D003972 ORTHO05D004609 3.6e-71 272.3 240 59.6
Gorai.008G105300 Gossypium raimondii HOM05D003972 ORTHO05D004609 4.7e-71 271.9 247 59.5
Nn7g36192 Nelumbo nucifera HOM05D003972 ORTHO05D004609 4.7e-71 271.9 245 58.4
CANSAT80G0274 Cannabis sativa HOM05D003972 ORTHO05D004609 6.1e-71 271.6 252 57.9
TWI73G1179 Tripterygium wilfordii HOM05D003972 ORTHO05D004609 8.0e-71 271.2 251 58.6
PGSC0003DMG400006869 Solanum tuberosum HOM05D003972 ORTHO05D004609 1.0e-70 270.8 247 58.7
EL10Ac3g05626 Beta vulgaris HOM05D003972 ORTHO05D004609 1.4e-70 270.4 241 58.5
ClCG09G004190 Citrullus lanatus HOM05D003972 ORTHO05D004609 1.4e-70 270.4 250 58.8
Duzib268G1708 Durio zibethinus HOM05D003972 ORTHO05D004609 1.4e-70 270.4 248 60.1
Prupe.2G012700 Prunus persica HOM05D003972 ORTHO05D004609 1.4e-70 270.4 252 57.9
Lsat_1_v5_gn_1_107421 Lactuca sativa HOM05D003972 ORTHO05D004609 1.8e-70 270.0 245 58.0
Hund16627 Selenicereus undatus HOM05D003972 ORTHO05D004609 1.8e-70 270.0 242 59.9
Solyc01g087120.3 Solanum lycopersicum HOM05D003972 ORTHO05D004609 1.8e-70 270.0 240 59.2
COL.COLO4_23932 Corchorus olitorius HOM05D003972 ORTHO05D004609 2.3e-70 269.6 276 55.8
Glyma.08G155200 Glycine max HOM05D003972 ORTHO05D004609 2.3e-70 269.6 246 58.5
TAR633G1993 Trochodendron aralioides HOM05D003972 ORTHO05D004609 2.3e-70 269.6 251 57.4
CSS0031611 Camellia sinensis var. sinensis HOM05D003972 ORTHO05D004609 3.0e-70 269.2 252 58.7
Peaxi162Scf00428g00211 Petunia axillaris HOM05D003972 ORTHO05D004609 3.0e-70 269.2 241 61.4
Duzib138G0053 Durio zibethinus HOM05D003972 ORTHO05D004609 5.2e-70 268.5 249 59.4
Gohir.A12G094100 Gossypium hirsutum HOM05D003972 ORTHO05D004609 5.2e-70 268.5 247 58.7
MD07G1010400 Malus domestica HOM05D003972 ORTHO05D004609 1.2e-69 267.3 253 58.1
FAN03G0639 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.5e-69 266.9 253 59.7
VMungo1080G1024 Vigna mungo HOM05D003972 ORTHO05D004609 1.5e-69 266.9 249 58.2
FAN01G2341 Fragaria x ananassa HOM05D003972 ORTHO05D004609 2.0e-69 266.5 253 59.3
CAN.G1560.6 Capsicum annuum HOM05D003972 ORTHO05D004609 2.6e-69 266.2 238 59.2
FvH4_7g01010 Fragaria vesca HOM05D003972 ORTHO05D004609 2.6e-69 266.2 248 59.7
Oeu047573.1 Olea europaea HOM05D003972 ORTHO05D004609 2.6e-69 266.2 249 57.0
FAN06G4274 Fragaria x ananassa HOM05D003972 ORTHO05D004609 3.3e-69 265.8 248 59.7
FAN10G2592 Fragaria x ananassa HOM05D003972 ORTHO05D004609 3.3e-69 265.8 248 59.7
RcHm_v2.0_Chr1g0315911 Rosa chinensis HOM05D003972 ORTHO05D004609 4.4e-69 265.4 252 59.1
TAR633G2347 Trochodendron aralioides HOM05D003972 ORTHO05D004609 5.7e-69 265.0 251 56.2
Ca_14380_v3 Cicer arietinum L. HOM05D003972 ORTHO05D004609 7.5e-69 264.6 243 58.4
Nitab4.5_0000634g0150 Nicotiana tabacum HOM05D003972 ORTHO05D004609 7.5e-69 264.6 247 57.9
vmacro13664 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 1.3e-68 263.8 252 55.6
Aqoxy2G00123 Aquilegia oxysepala HOM05D003972 ORTHO05D004609 2.2e-68 263.1 254 57.5
CiPaw.13G004600 Carya illinoinensis HOM05D003972 ORTHO05D004609 2.2e-68 263.1 245 58.4
QL04p006659 Quercus lobata HOM05D003972 ORTHO05D004609 2.8e-68 262.7 205 65.9
Actinidia20668 Actinidia chinensis HOM05D003972 ORTHO05D004609 4.8e-68 261.9 250 57.2
HanXRQChr01g0016231 Helianthus annuus HOM05D003972 ORTHO05D004609 6.3e-68 261.5 246 56.1
MSTRG.28071 Avicennia marina HOM05D003972 ORTHO05D004609 8.2e-68 261.2 243 57.6
MELO3C023548.2 Cucumis melo HOM05D003972 ORTHO05D004609 8.2e-68 261.2 251 58.2
HanXRQChr16g0524521 Helianthus annuus HOM05D003972 ORTHO05D004609 8.2e-68 261.2 244 57.0
CsaV3_7G031080 Cucumis sativus L. HOM05D003972 ORTHO05D004609 1.8e-67 260.0 251 57.8
Phvul.005G021000 Phaseolus vulgaris HOM05D003972 ORTHO05D004609 1.8e-67 260.0 249 56.6
GSVIVG01032087001 Vitis vinifera HOM05D003972 ORTHO05D004609 1.8e-67 260.0 250 56.4
SalBow6G4991 Salvia bowleyana HOM05D003972 ORTHO05D004609 3.1e-67 259.2 239 57.3
PSO339G6021 Papaver somniferum HOM05D003972 ORTHO05D004609 1.2e-66 257.3 240 56.7
PGR042G2196 Punica granatum HOM05D003972 ORTHO05D004609 1.6e-66 256.9 246 57.3
MSTRG.5022 Avicennia marina HOM05D003972 ORTHO05D004609 2.0e-66 256.5 248 57.7
PSO384G2850 Papaver somniferum HOM05D003972 ORTHO05D004609 2.0e-66 256.5 240 56.2
Sc11g0009210 Simmondsia chinensis HOM05D003972 ORTHO05D004609 2.0e-66 256.5 192 66.1
Migut.N01593 Erythranthe guttata HOM05D003972 ORTHO05D004609 2.7e-66 256.1 248 54.0
Haze_03211 Corylus avellana HOM05D000015 ORTHO05D004609 3.5e-66 255.8 279 53.0
Lj4g0010030 Lotus japonicus HOM05D003972 ORTHO05D004609 4.5e-66 255.4 245 57.1
Ah.06g182390 Amaranthus hybridus HOM05D003972 ORTHO05D004609 5.9e-66 255.0 258 56.2
Sed0003633 Sechium edule HOM05D003972 ORTHO05D004609 7.7e-66 254.6 241 58.1
Lalb_Chr11g0073961 Lupinus albus HOM05D003972 ORTHO05D004609 1.3e-65 253.8 246 56.1
MBI04_g36067_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 1.3e-65 253.8 253 53.8
SalBow8G4898 Salvia bowleyana HOM05D003972 ORTHO05D004609 2.2e-65 253.1 235 57.0
AUR62009382 Chenopodium quinoa HOM05D003972 ORTHO05D004609 3.8e-65 252.3 241 55.2
AUR62027419 Chenopodium quinoa HOM05D003972 ORTHO05D004609 5.0e-65 251.9 246 54.9
SalBow5G3531 Salvia bowleyana HOM05D003972 ORTHO05D004609 6.5e-65 251.5 253 55.7
Lalb_Chr08g0232821 Lupinus albus HOM05D003972 ORTHO05D004609 8.5e-65 251.1 250 55.6
Nitab4.5_0002179g0040 Nicotiana tabacum HOM05D003972 ORTHO05D004609 8.5e-65 251.1 275 51.6
arahy.Tifrunner.gnm1.ann1.9I3PL7 Arachis hypogaea HOM05D003972 ORTHO05D004609 1.1e-64 250.8 246 54.9
Oeu014581.1 Olea europaea HOM05D003972 ORTHO05D004609 1.1e-64 250.8 258 53.1
Potri.009G061600 Populus trichocarpa HOM05D003972 ORTHO05D004609 1.5e-64 250.4 248 54.4
arahy.Tifrunner.gnm1.ann1.XF35YI Arachis hypogaea HOM05D003972 ORTHO05D004609 1.9e-64 250.0 246 54.5
Psat5g207400 Pisum sativum HOM05D003972 ORTHO05D004609 2.5e-64 249.6 243 55.6
BcaB06g27143 Brassica carinata HOM05D003972 ORTHO05D004609 3.2e-64 249.2 142 91.5
ECA248G3800 Erigeron canadensis HOM05D003972 ORTHO05D004609 3.2e-64 249.2 243 56.4
HanXRQChr17g0562951 Helianthus annuus HOM05D003972 ORTHO05D004609 3.2e-64 249.2 246 54.9
Lj7A570T56 Lonicera japonica HOM05D003972 ORTHO05D004609 3.2e-64 249.2 201 64.2
Oeu006575.2 Olea europaea HOM05D003972 ORTHO05D004609 4.2e-64 248.8 243 55.6
Sabra09G0045500 Salix brachista HOM05D003972 ORTHO05D004609 4.2e-64 248.8 248 54.0
Medtr3g028730 Medicago truncatula HOM05D003972 ORTHO05D004609 1.2e-63 247.3 243 53.9
TPR.G12160 Trifolium pratense HOM05D003972 ORTHO05D004609 3.6e-63 245.7 243 53.5
MBI01_g18885_MAGBIO Magnolia biondii HOM05D003972 ORTHO05D004609 1.0e-62 244.2 246 53.7
Ah.06g182400 Amaranthus hybridus HOM05D003972 ORTHO05D004609 4.0e-62 242.3 272 52.2
CDE05G0778 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 8.8e-62 241.1 251 51.8
unitig_8.g3624 Utricularia gibba HOM05D003972 ORTHO05D004609 1.5e-61 240.4 247 53.0
ECA234G1269 Erigeron canadensis HOM05D005395 ORTHO05D000002 9.8e-61 237.7 224 54.9
Lsat_1_v5_gn_1_107400 Lactuca sativa HOM05D003972 ORTHO05D004609 1.7e-60 236.9 247 53.0
CDE05G2400 Ceratophyllum demersum HOM05D003972 ORTHO05D004609 2.2e-60 236.5 249 51.4
DCAR_006337 Daucus carota HOM05D003972 ORTHO05D004609 2.8e-60 236.1 221 56.1
AUR62027358 Chenopodium quinoa HOM05D003972 ORTHO05D004609 8.3e-60 234.6 232 53.9
HPP92_003787 Vanilla planifolia HOM05D003972 ORTHO05D004609 4.1e-59 232.3 243 50.6
ClCG10G012410 Citrullus lanatus HOM05D003972 ORTHO05D004609 5.4e-59 231.9 280 50.0
ATR0605G205 Amborella trichopoda HOM05D003972 ORTHO05D004609 2.7e-58 229.6 257 51.4
Os06g0646500 Oryza sativa ssp. japonica HOM05D003972 ORTHO05D004609 1.3e-57 227.3 224 53.1
FAN18G0724 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.6e-55 220.3 247 48.2
FvH4_5g10590 Fragaria vesca HOM05D003972 ORTHO05D004609 8.0e-55 218.0 257 46.3
RcHm_v2.0_Chr7g0187561 Rosa chinensis HOM05D003972 ORTHO05D004609 1.8e-54 216.9 250 46.4
FAN13G3241 Fragaria x ananassa HOM05D003972 ORTHO05D004609 4.0e-54 215.7 257 45.9
FAN04G1554 Fragaria x ananassa HOM05D003972 ORTHO05D004609 1.5e-53 213.8 257 45.1
SGA_v2.0_scaffold24G10676 Striga asiatica HOM05D003972 ORTHO05D004609 2.6e-53 213.0 232 52.6
Lj9A631T54 Lonicera japonica HOM05D003972 ORTHO05D004609 4.4e-53 212.2 254 48.8
Zm00001eb188600 Zea mays HOM05D003972 ORTHO05D004609 9.8e-53 211.1 240 48.8
Sed0014658 Sechium edule HOM05D003972 ORTHO05D004609 6.3e-52 208.4 249 52.6
vmacro21185 Vaccinium macrocarpon HOM05D003972 ORTHO05D004609 1.8e-51 206.8 354 39.5
Cc02_g27920 Coffea canephora HOM05D003972 ORTHO05D004609 1.2e-50 204.1 199 55.8
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 1.6e-50 203.8 110 96.4
SHI04087 Sapria himalayana HOM05D003972 ORTHO05D004609 1.7e-49 200.3 199 51.8
SGA_v2.0_scaffold5G02971 Striga asiatica HOM05D003972 ORTHO05D004609 3.8e-49 199.1 359 37.6
SEGI_23171 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 5.0e-49 198.7 214 47.2
SalBow5G0402 Salvia bowleyana HOM05D003972 ORTHO05D004609 4.0e-46 189.1 201 55.2
Cpa.g.sc245.17 Carica papaya HOM05D003972 ORTHO05D004609 1.1e-43 181.0 244 46.7
SEGI_22482 Sequoiadendron giganteum HOM05D003972 ORTHO05D004609 5.4e-43 178.7 194 49.0
Rhsim01G0129500 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.0e-41 174.5 294 40.5
Dinv43448 Davidia involucrata HOM05D003972 ORTHO05D004609 6.6e-41 171.8 193 50.3
Pp3c21_13430 Physcomitrium patens HOM05D003972 ORTHO05D004609 1.6e-39 167.2 233 37.8
Pp3c21_15430 Physcomitrium patens HOM05D003972 ORTHO05D004609 2.8e-39 166.4 202 41.6
Mapoly0003s0068 Marchantia polymorpha HOM05D003972 ORTHO05D004609 2.4e-35 153.3 224 38.8
CBR_g17944 Chara braunii HOM05D003972 ORTHO05D004609 6.0e-34 148.7 223 39.5
QL04p007936 Quercus lobata HOM05D003972 ORTHO05D004609 1.5e-32 144.1 160 50.0
MELO3C030924.2 Cucumis melo HOM05D003972 ORTHO05D004609 1.9e-32 143.7 144 52.8
Haze_18530 Corylus avellana HOM05D003972 ORTHO05D004609 2.5e-32 143.3 148 52.0
Haze_20480 Corylus avellana HOM05D003972 ORTHO05D004609 2.8e-31 139.8 116 59.5
CsaV3_3G032180 Cucumis sativus L. HOM05D003972 ORTHO05D004609 4.4e-29 132.5 98 65.3
AagrBONN_evm.TU.Sc2ySwM_344.1217 Anthoceros agrestis HOM05D003972 ORTHO05D004609 2.9e-28 129.8 156 43.6
Pp3c11_16260 Physcomitrium patens HOM05D003972 ORTHO05D004609 3.2e-27 126.3 197 35.5
Actinidia21554 Actinidia chinensis HOM05D003972 ORTHO05D004609 2.7e-26 123.2 167 41.9
BcaB01g02352 Brassica carinata HOM05D003895 ORTHO05D004723 6.0e-26 122.1 67 94.0
Eucgr.I01987 Eucalyptus grandis HOM05D003972 ORTHO05D004609 1.7e-25 120.6 143 49.0
BcaB01g00975 Brassica carinata HOM05D003895 ORTHO05D004723 5.1e-25 119.0 67 92.5
MCO05G116 Micromonas commoda HOM05D003972 ORTHO05D004609 7.3e-24 115.2 184 33.7
SMO228G0064 Selaginella moellendorffii HOM05D003972 ORTHO05D004609 1.4e-22 110.9 183 33.9
PRCOL_00004246 Prasinoderma coloniale HOM05D003972 ORTHO05D004609 1.2e-21 107.8 230 31.3
BcaB05g22068 Brassica carinata HOM05D003895 ORTHO05D004723 2.0e-21 107.1 189 43.4
Cpa.g.c41216 Carica papaya HOM05D003972 ORTHO05D004609 9.9e-21 104.8 72 70.8
Sc10g0000050 Simmondsia chinensis HOM05D003972 ORTHO05D004609 2.2e-20 103.6 72 70.8
GSVIVG01024256001 Vitis vinifera HOM05D003972 ORTHO05D004609 2.9e-20 103.2 86 59.3
Cre16.g680000 Chlamydomonas reinhardtii HOM05D003972 ORTHO05D004609 1.2e-18 97.8 203 29.6
Manes.07G005701 Manihot esculenta HOM05D003972 ORTHO05D004609 3.9e-17 92.8 101 52.5
CsaV3_3G032190 Cucumis sativus L. HOM05D003972 ORTHO05D004609 6.6e-17 92.0 118 46.6
Rhsim01G0081100 Rhododendron simsii HOM05D003972 ORTHO05D004609 5.2e-14 82.4 70 57.1
Rhsim02G0189700 Rhododendron simsii HOM05D003972 ORTHO05D004609 5.2e-14 82.4 74 52.7
Rhsim01G0052900 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.5e-13 80.9 70 54.3
Rhsim02G0048300 Rhododendron simsii HOM05D003972 ORTHO05D004609 1.5e-13 80.9 70 54.3
MELO3C030665.2 Cucumis melo HOM05D003972 ORTHO05D004609 6.4e-12 75.5 59 64.4
Oeu001061.1 Olea europaea HOM05D003160 ORTHO05D005967 4.6e-10 69.3 172 25.0
MCO11G452 Micromonas commoda HOM05D003160 ORTHO05D005967 7.8e-10 68.6 189 24.3
BolC4t26421H Brassica oleracea HOM05D003972 ORTHO05D004609 3.0e-09 66.6 55 65.5
vmacro04777 Vaccinium macrocarpon HOM05D003160 ORTHO05D005967 3.9e-09 66.2 182 30.2
ClCG08G002530 Citrullus lanatus HOM05D003160 ORTHO05D005967 1.6e-07 60.8 185 24.9
Pp3c23_11680 Physcomitrium patens HOM05D003160 ORTHO05D005967 2.1e-07 60.5 213 23.0
Pp3c23_6060 Physcomitrium patens HOM05D003160 ORTHO05D005967 2.4e-06 57.0 229 24.0
TAR381G0896 Trochodendron aralioides HOM05D003160 ORTHO05D005967 3.1e-06 56.6 191 23.0


User provided reference genes

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