Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p05700 Brassica napus HOM05D006039 ORTHO05D006797 5.2e-238 827.4 445 100.0
BraA03t09909Z Brassica rapa HOM05D006039 ORTHO05D006797 7.1e-227 790.4 448 95.8
BolC3t13172H Brassica oleracea HOM05D006039 ORTHO05D006797 5.3e-206 721.1 449 86.4
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 5.9e-197 691.0 445 85.4
C03p06660 Brassica napus HOM05D006039 ORTHO05D006797 2.2e-180 636.0 449 82.6
Thhalv10013519m.g Eutrema salsugineum HOM05D006039 ORTHO05D006797 1.9e-171 606.3 455 77.4
Sp6g31030 Schrenkiella parvula HOM05D006039 ORTHO05D006797 1.4e-169 600.1 450 78.4
BcaB01g05389 Brassica carinata HOM05D006039 ORTHO05D006797 4.0e-169 598.6 449 79.3
AL6G23500 Arabidopsis lyrata HOM05D006039 ORTHO05D006797 3.8e-164 582.0 453 75.3
CARHR200520 Cardamine hirsuta HOM05D006039 ORTHO05D006797 2.8e-159 565.8 458 72.9
BcaNung03603 Brassica carinata HOM05D006039 ORTHO05D006797 1.1e-155 553.9 451 72.1
Carub.0006s1111 Capsella rubella HOM05D006039 ORTHO05D006797 2.6e-152 542.7 462 71.6
AT5G12930 Arabidopsis thaliana HOM05D006039 ORTHO05D006797 2.8e-151 539.3 452 71.7
A02p01580 Brassica napus HOM05D006039 ORTHO05D006797 4.1e-150 535.4 447 70.2
BraA02t05138Z Brassica rapa HOM05D006039 ORTHO05D006797 8.0e-146 521.2 449 70.8
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 4.0e-129 465.7 440 64.3
BcaNung01186 Brassica carinata HOM05D006039 ORTHO05D006797 1.5e-128 463.8 450 64.2
BolC2t06525H Brassica oleracea HOM05D006039 ORTHO05D006797 1.5e-128 463.8 450 64.2
C02p05800 Brassica napus HOM05D006039 ORTHO05D006797 9.9e-128 461.1 450 66.4
THA.LOC104804971 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 4.0e-105 386.0 471 54.6
THA.LOC104799094 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 2.2e-103 380.2 468 53.6
TWI32G0154 Tripterygium wilfordii HOM05D006039 ORTHO05D006797 2.7e-85 320.1 446 48.0
Potri.003G207400 Populus trichocarpa HOM05D006039 ORTHO05D006797 5.7e-83 312.4 460 45.2
Atru.chr3.2554 Acer truncatum HOM05D006039 ORTHO05D006797 2.8e-82 310.1 474 46.4
Sabra01G0012000 Salix brachista HOM05D006039 ORTHO05D006797 6.3e-82 308.9 470 44.9
Potri.001G017100 Populus trichocarpa HOM05D006039 ORTHO05D006797 7.7e-80 302.0 468 43.8
Eucgr.B03667 Eucalyptus grandis HOM05D006039 ORTHO05D006797 1.0e-79 301.6 411 46.7
Ciclev10014934m.g Citrus clementina HOM05D006039 ORTHO05D006797 2.5e-78 297.0 380 49.2
Thecc.09G226300 Theobroma cacao HOM05D006039 ORTHO05D006797 3.2e-78 296.6 463 43.2
Duzib168G2100 Durio zibethinus HOM05D006039 ORTHO05D006797 1.8e-76 290.8 461 43.0
Cpa.g.sc84.90 Carica papaya HOM05D006039 ORTHO05D006797 5.1e-76 289.3 469 42.4
QL01p005703 Quercus lobata HOM05D006039 ORTHO05D006797 2.0e-75 287.3 477 43.0
CiPaw.14G122300 Carya illinoinensis HOM05D006039 ORTHO05D006797 5.7e-75 285.8 399 47.6
COL.COLO4_24829 Corchorus olitorius HOM05D006039 ORTHO05D006797 9.7e-75 285.0 440 43.2
Manes.06G167800 Manihot esculenta HOM05D006039 ORTHO05D006797 1.8e-73 280.8 474 41.8
MELO3C014616.2 Cucumis melo HOM05D006039 ORTHO05D006797 1.7e-71 274.2 397 44.8
CSS0048119 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 2.2e-71 273.9 466 42.7
ClCG02G023440 Citrullus lanatus HOM05D006039 ORTHO05D006797 8.5e-71 271.9 463 42.8
CSS0020882 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 1.4e-70 271.2 466 42.5
Haze_23073 Corylus avellana HOM05D006039 ORTHO05D006797 1.4e-70 271.2 460 41.5
CsaV3_4G024070 Cucumis sativus L. HOM05D006039 ORTHO05D006797 1.9e-70 270.8 399 44.1
Prupe.6G022100 Prunus persica HOM05D006039 ORTHO05D006797 5.5e-70 269.2 380 46.3
Lalb_Chr24g0396971 Lupinus albus HOM05D006039 ORTHO05D006797 7.2e-70 268.9 421 43.9
Manes.14G013400 Manihot esculenta HOM05D006039 ORTHO05D006797 7.2e-70 268.9 454 40.3
Gohir.A13G216000 Gossypium hirsutum HOM05D006039 ORTHO05D006797 1.2e-69 268.1 415 43.9
Dinv36292 Davidia involucrata HOM05D006039 ORTHO05D006797 1.6e-69 267.7 451 40.6
Sed0010144 Sechium edule HOM05D006039 ORTHO05D006797 6.1e-69 265.8 426 42.7
Duzib150G0354 Durio zibethinus HOM05D006039 ORTHO05D006797 1.4e-68 264.6 443 42.7
Medtr2g098330 Medicago truncatula HOM05D006039 ORTHO05D006797 8.8e-68 261.9 477 41.1
arahy.Tifrunner.gnm1.ann1.CQR7QS Arachis hypogaea HOM05D006039 ORTHO05D006797 1.1e-67 261.5 452 42.9
CANSAT54G2219 Cannabis sativa HOM05D006039 ORTHO05D006797 1.5e-67 261.2 477 43.4
RcHm_v2.0_Chr5g0077351 Rosa chinensis HOM05D006039 ORTHO05D006797 2.0e-67 260.8 420 43.8
Gohir.D13G219700 Gossypium hirsutum HOM05D006039 ORTHO05D006797 3.3e-67 260.0 420 43.1
MD11G1028000 Malus domestica HOM05D006039 ORTHO05D006797 2.8e-66 256.9 408 43.6
Lj3g0020392 Lotus japonicus HOM05D006039 ORTHO05D006797 3.7e-66 256.5 443 42.4
FAN25G3739 Fragaria x ananassa HOM05D006039 ORTHO05D006797 6.3e-66 255.8 369 45.8
Phvul.L011043 Phaseolus vulgaris HOM05D006039 ORTHO05D006797 1.8e-65 254.2 451 41.0
Lalb_Chr22g0352291 Lupinus albus HOM05D006039 ORTHO05D006797 5.3e-65 252.7 434 42.6
FAN21G1726 Fragaria x ananassa HOM05D006039 ORTHO05D006797 7.0e-65 252.3 359 46.0
FAN11G0272 Fragaria x ananassa HOM05D006039 ORTHO05D006797 5.9e-64 249.2 390 44.1
Sc16g0011650 Simmondsia chinensis HOM05D006039 ORTHO05D006797 1.7e-63 247.7 410 42.9
VMungo1080G1590 Vigna mungo HOM05D006039 ORTHO05D006797 6.5e-63 245.7 443 40.9
Glyma.15G032500 Glycine max HOM05D006039 ORTHO05D006797 8.5e-63 245.4 471 40.6
PGR102G2927 Punica granatum HOM05D006039 ORTHO05D006797 1.5e-62 244.6 427 41.5
PSO339G2813 Papaver somniferum HOM05D006039 ORTHO05D006797 7.2e-62 242.3 463 38.7
Lj1C361T2 Lonicera japonica HOM05D006039 ORTHO05D006797 9.4e-62 241.9 421 40.6
GSVIVG01025314001 Vitis vinifera HOM05D006039 ORTHO05D006797 1.2e-61 241.5 403 43.9
Actinidia06328 Actinidia chinensis HOM05D006039 ORTHO05D006797 1.6e-61 241.1 449 40.1
PSO384G3161 Papaver somniferum HOM05D006039 ORTHO05D006797 4.7e-61 239.6 464 38.8
Rhsim01G0190000 Rhododendron simsii HOM05D006039 ORTHO05D006797 1.0e-60 238.4 457 38.5
Cfa009721 Carpinus fangiana HOM05D006039 ORTHO05D006797 6.7e-60 235.7 302 47.4
Aqoxy3G00443 Aquilegia oxysepala HOM05D006039 ORTHO05D006797 1.1e-59 235.0 405 40.2
Cc01_g04400 Coffea canephora HOM05D006039 ORTHO05D006797 1.1e-59 235.0 407 40.3
arahy.Tifrunner.gnm1.ann1.IJ2E5N Arachis hypogaea HOM05D006039 ORTHO05D006797 2.0e-59 234.2 438 41.1
Glyma.13G341800 Glycine max HOM05D006039 ORTHO05D006797 2.0e-59 234.2 455 38.9
TAR623G0385 Trochodendron aralioides HOM05D006039 ORTHO05D006797 9.7e-59 231.9 468 38.7
Nitab4.5_0000175g0040 Nicotiana tabacum HOM05D006039 ORTHO05D006797 1.1e-57 228.4 468 39.3
MSTRG.17577 Avicennia marina HOM05D006039 ORTHO05D006797 1.4e-57 228.0 380 41.1
Nitab4.5_0002278g0050 Nicotiana tabacum HOM05D006039 ORTHO05D006797 2.4e-57 227.3 459 41.2
FAN16G1487 Fragaria x ananassa HOM05D006039 ORTHO05D006797 3.1e-57 226.9 310 45.5
Solyc11g056640.3 Solanum lycopersicum HOM05D006039 ORTHO05D006797 7.7e-56 222.2 471 37.6
MBI01_g36435_MAGBIO Magnolia biondii HOM05D006039 ORTHO05D006797 1.3e-55 221.5 458 38.2
Peaxi162Scf00839g00234 Petunia axillaris HOM05D006039 ORTHO05D006797 8.5e-55 218.8 454 38.8
Potri.003G207500 Populus trichocarpa HOM05D006039 ORTHO05D006797 1.6e-53 214.5 364 41.2
ECA233G1597 Erigeron canadensis HOM05D006039 ORTHO05D006797 4.7e-53 213.0 351 42.5
Migut.N02301 Erythranthe guttata HOM05D006039 ORTHO05D006797 6.1e-53 212.6 472 37.5
EL10Ac4g10308 Beta vulgaris HOM05D006039 ORTHO05D006797 8.0e-53 212.2 385 40.3
SalBow4G0075 Salvia bowleyana HOM05D006039 ORTHO05D006797 2.3e-52 210.7 463 37.6
SalBow4G2759 Salvia bowleyana HOM05D006039 ORTHO05D006797 2.3e-52 210.7 463 37.6
Psat5g288280 Pisum sativum HOM05D006039 ORTHO05D006797 6.8e-52 209.1 492 35.0
Oeu014066.1 Olea europaea HOM05D006039 ORTHO05D006797 2.6e-51 207.2 411 37.7
SGA_v2.0_scaffold247G44833 Striga asiatica HOM05D006039 ORTHO05D006797 2.6e-51 207.2 487 35.9
Ah.06g193560 Amaranthus hybridus HOM05D006039 ORTHO05D006797 5.7e-51 206.1 406 37.2
HanXRQChr13g0403991 Helianthus annuus HOM05D006039 ORTHO05D006797 7.5e-51 205.7 413 38.5
vmacro12713 Vaccinium macrocarpon HOM05D006039 ORTHO05D006797 1.8e-49 201.1 449 35.9
Nn7g36093 Nelumbo nucifera HOM05D006039 ORTHO05D006797 1.6e-48 198.0 360 40.0
DCAR_002046 Daucus carota HOM05D006039 ORTHO05D006797 2.0e-48 197.6 411 38.9
Lsat_1_v5_gn_1_67181 Lactuca sativa HOM05D006039 ORTHO05D006797 1.0e-47 195.3 458 35.4
Sabra03G0153000 Salix brachista HOM05D006039 ORTHO05D006797 1.3e-47 194.9 375 38.4
Migut.D00567 Erythranthe guttata HOM05D006039 ORTHO05D006797 4.2e-46 189.9 367 39.2
MSTRG.12478 Avicennia marina HOM05D006039 ORTHO05D006797 7.2e-46 189.1 469 35.0
Ca_01279_v3 Cicer arietinum L. HOM05D006039 ORTHO05D006797 1.6e-45 188.0 345 38.3
HPP92_015767 Vanilla planifolia HOM05D006039 ORTHO05D006797 5.7e-43 179.5 405 34.3
FvH4_3g43290 Fragaria vesca HOM05D006039 ORTHO05D006797 1.7e-42 177.9 256 43.4
Hund07543 Selenicereus undatus HOM05D006039 ORTHO05D006797 3.8e-39 166.8 274 39.1
Os09g0488600 Oryza sativa ssp. japonica HOM05D006039 ORTHO05D006797 1.6e-37 161.4 343 36.2
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.1e-37 161.0 421 32.1
Nn2g15509 Nelumbo nucifera HOM05D006039 ORTHO05D006797 2.3e-36 157.5 347 34.3
TPR.G6898 Trifolium pratense HOM05D006039 ORTHO05D006797 9.8e-35 152.1 362 35.6
Haze_23698 Corylus avellana HOM05D006039 ORTHO05D006797 1.7e-34 151.4 192 43.8
AUR62019256 Chenopodium quinoa HOM05D006039 ORTHO05D006797 2.2e-34 151.0 466 31.1
AUR62005725 Chenopodium quinoa HOM05D006039 ORTHO05D006797 4.1e-33 146.7 413 32.2
ATR0815G050 Amborella trichopoda HOM05D006039 ORTHO05D006797 4.6e-32 143.3 347 35.4
Haze_23653 Corylus avellana HOM05D006039 ORTHO05D006797 1.7e-31 141.4 255 38.4
Haze_23654 Corylus avellana HOM05D006039 ORTHO05D006797 9.5e-30 135.6 225 37.3
CDE06G0903 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 8.0e-29 132.5 251 35.5
Zm00001eb101890 Zea mays HOM05D006039 ORTHO05D006797 1.4e-28 131.7 305 32.8
Haze_23655 Corylus avellana HOM05D006039 ORTHO05D006797 5.8e-27 126.3 245 37.6
TPR.G377 Trifolium pratense HOM05D006039 ORTHO05D006797 1.1e-25 122.1 136 54.4
Haze_23701 Corylus avellana HOM05D006039 ORTHO05D006797 5.4e-25 119.8 247 34.4
Haze_23656 Corylus avellana HOM05D006039 ORTHO05D006797 7.0e-25 119.4 334 34.4
AUR62043683 Chenopodium quinoa HOM05D006039 ORTHO05D006797 7.8e-24 115.9 294 32.3
Haze_23699 Corylus avellana HOM05D006039 ORTHO05D006797 1.3e-23 115.2 169 37.9
SHI30498 Sapria himalayana HOM05D006039 ORTHO05D000001 5.6e-22 109.8 382 28.8
MELO3C003056.2 Cucumis melo HOM05D006039 ORTHO05D006797 1.6e-21 108.2 160 43.8
Actinidia39388 Actinidia chinensis HOM05D006039 ORTHO05D006797 8.3e-18 95.9 243 33.3
AUR62043578 Chenopodium quinoa HOM05D006039 ORTHO05D006797 3.2e-17 94.0 208 32.2
Cfa009719 Carpinus fangiana HOM05D006039 ORTHO05D006797 2.7e-16 90.9 221 33.9
AUR62000084 Chenopodium quinoa HOM05D006039 ORTHO05D000067 3.3e-14 84.0 161 42.2
Hund07491 Selenicereus undatus HOM05D006039 ORTHO05D006797 2.0e-11 74.7 143 40.6
Hund07487 Selenicereus undatus HOM05D000288 ORTHO05D006797 1.7e-10 71.6 143 39.9
Lsat_1_v5_gn_1_67161 Lactuca sativa HOM05D006039 ORTHO05D006797 1.6e-08 65.1 81 46.9
SEGI_29391 Sequoiadendron giganteum HOM05D022188 ORTHO05D006797 3.3e-06 57.4 242 25.2
AUR62014261 Chenopodium quinoa HOM05D006039 ORTHO05D006797 9.6e-06 55.8 147 35.4


User provided reference genes

Program Settings