Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 1.4e-121 439.9 265 100.0
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 7.7e-112 407.5 267 88.8
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 1.7e-111 406.4 265 94.3
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 2.8e-106 389.0 267 85.8
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 5.2e-100 368.2 265 75.1
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 4.1e-97 358.6 265 73.2
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 4.5e-96 355.1 266 85.0
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 1.3e-95 353.6 266 83.8
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 2.3e-95 352.8 265 85.3
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 2.1e-93 346.3 265 83.4
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 4.0e-92 342.0 265 72.1
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 1.1e-89 334.0 266 74.8
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 4.1e-89 332.0 265 73.6
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 1.9e-86 323.2 266 82.3
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 2.5e-86 322.8 265 67.5
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 2.5e-78 296.2 269 62.8
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 1.2e-77 293.9 263 65.8
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 1.8e-76 290.0 271 64.9
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 3.1e-76 289.3 271 64.6
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 4.0e-76 288.9 271 64.2
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 4.0e-76 288.9 254 69.7
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 8.9e-76 287.7 250 67.6
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 2.0e-75 286.6 271 63.8
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 2.0e-75 286.6 271 63.8
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 6.4e-74 281.6 269 67.3
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 1.4e-73 280.4 269 67.3
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 7.3e-62 241.5 258 54.3
AL6G30920 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 9.5e-62 241.1 210 68.1
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 3.1e-60 236.1 259 51.7
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 2.0e-59 233.4 251 54.2
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 2.6e-59 233.0 250 55.6
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 7.6e-59 231.5 245 52.7
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 9.9e-59 231.1 251 49.4
BcaB01g04862 Brassica carinata HOM05D004084 ORTHO05D004662 1.3e-58 230.7 270 60.4
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 1.7e-58 230.3 268 55.6
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 1.7e-58 230.3 251 54.2
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 2.9e-58 229.6 260 55.4
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 4.9e-58 228.8 274 49.6
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 6.4e-58 228.4 268 54.5
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 6.4e-58 228.4 253 54.2
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 6.4e-58 228.4 270 49.6
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 1.1e-57 227.6 268 51.1
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 1.9e-57 226.9 250 50.0
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 2.4e-57 226.5 248 50.4
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 2.4e-57 226.5 260 55.4
CARHR193510 Cardamine hirsuta HOM05D004084 ORTHO05D004662 3.2e-57 226.1 211 64.0
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 7.1e-57 224.9 253 49.8
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 9.2e-57 224.6 267 47.9
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 9.2e-57 224.6 253 51.4
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 1.6e-56 223.8 239 51.0
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 2.7e-56 223.0 229 52.4
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 2.7e-56 223.0 250 49.6
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 4.6e-56 222.2 268 57.8
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 6.0e-56 221.9 268 57.5
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 6.0e-56 221.9 230 56.1
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 1.0e-55 221.1 250 62.0
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 1.3e-55 220.7 265 50.6
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 2.3e-55 219.9 253 56.1
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 2.3e-55 219.9 261 51.0
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 2.3e-55 219.9 258 53.9
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 3.0e-55 219.5 249 49.8
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 3.9e-55 219.2 254 48.0
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 6.6e-55 218.4 253 52.2
MBI13_g27798_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 6.6e-55 218.4 246 48.8
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 6.6e-55 218.4 236 50.8
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 8.7e-55 218.0 236 50.4
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 1.5e-54 217.2 275 53.5
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.9e-54 216.9 268 57.5
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 2.5e-54 216.5 269 46.5
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 4.3e-54 215.7 258 48.1
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 4.3e-54 215.7 261 62.1
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 5.6e-54 215.3 260 48.5
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 9.6e-54 214.5 253 51.4
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 1.3e-53 214.2 242 55.0
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 1.6e-53 213.8 231 51.1
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 2.1e-53 213.4 250 52.8
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 2.8e-53 213.0 255 49.0
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 3.6e-53 212.6 250 49.6
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 4.8e-53 212.2 268 51.1
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 8.1e-53 211.5 268 51.1
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 8.1e-53 211.5 229 52.0
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 1.4e-52 210.7 258 55.0
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 1.4e-52 210.7 253 52.2
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 1.8e-52 210.3 232 58.6
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 1.8e-52 210.3 275 59.6
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 1.8e-52 210.3 237 50.6
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 3.1e-52 209.5 274 45.3
TWI79G0099 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 3.1e-52 209.5 263 46.8
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 4.0e-52 209.1 283 51.2
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 5.3e-52 208.8 271 46.1
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 1.2e-51 207.6 244 54.5
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 1.2e-51 207.6 281 44.5
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 3.4e-51 206.1 225 50.2
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 5.8e-51 205.3 230 53.9
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 1.3e-50 204.1 251 47.0
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 1.7e-50 203.8 235 53.2
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 2.9e-50 203.0 228 49.6
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 4.9e-50 202.2 273 45.1
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 1.1e-49 201.1 215 49.3
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 1.4e-49 200.7 296 53.4
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 2.4e-49 199.9 273 45.1
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 5.4e-49 198.7 242 50.8
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 5.4e-49 198.7 242 50.8
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 1.2e-48 197.6 235 48.1
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 2.1e-48 196.8 249 49.8
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 2.1e-48 196.8 234 48.7
Actinidia06961 Actinidia chinensis HOM05D004084 ORTHO05D004662 2.7e-48 196.4 213 52.1
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 3.5e-48 196.1 243 49.4
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 7.8e-48 194.9 235 53.6
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 1.1e-46 191.0 250 46.4
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 1.6e-45 187.2 240 47.1
ATR0680G173 Amborella trichopoda HOM05D004084 ORTHO05D004662 2.1e-45 186.8 227 46.7
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 8.1e-45 184.9 234 57.7
unitig_8.g3650 Utricularia gibba HOM05D004084 ORTHO05D000654 3.1e-44 183.0 167 56.3
SEGI_32483 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 6.9e-44 181.8 191 50.3
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 1.2e-43 181.0 233 50.2
Nn7g36697 Nelumbo nucifera HOM05D004084 ORTHO05D004662 1.5e-43 180.6 171 60.2
PSO339G4433 Papaver somniferum HOM05D004084 ORTHO05D004662 1.5e-43 180.6 242 43.4
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 1.5e-43 180.6 164 57.9
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 3.4e-43 179.5 260 42.3
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 3.8e-42 176.0 261 48.7
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 2.4e-41 173.3 227 44.9
QL01p017232 Quercus lobata HOM05D004084 ORTHO05D004662 1.2e-40 171.0 199 51.8
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 1.6e-40 170.6 249 41.0
COL.COLO4_35673 Corchorus olitorius HOM05D004084 ORTHO05D004662 3.0e-39 166.4 201 55.2
DCAR_023764 Daucus carota HOM05D000857 ORTHO05D004662 3.0e-39 166.4 200 47.5
SMO337G0017 Selaginella moellendorffii HOM05D004084 ORTHO05D004662 6.7e-39 165.2 196 45.9
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 1.1e-38 164.5 101 72.3
AagrBONN_evm.TU.Sc2ySwM_228.3727 Anthoceros agrestis HOM05D004084 ORTHO05D004662 1.9e-38 163.7 154 52.6
Haze_23226 Corylus avellana HOM05D004084 ORTHO05D004662 1.9e-38 163.7 202 45.5
Pp3c26_14330 Physcomitrium patens HOM05D004084 ORTHO05D004662 6.2e-37 158.7 205 43.4
Actinidia16378 Actinidia chinensis HOM05D004084 ORTHO05D004662 2.0e-35 153.7 115 60.9
PSO384G1598 Papaver somniferum HOM05D004084 ORTHO05D004662 2.0e-35 153.7 252 40.1
SEGI_38021 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 1.0e-34 151.4 202 47.0
Hund21983 Selenicereus undatus HOM05D004084 ORTHO05D004662 4.6e-32 142.5 204 51.0
AL6G23110 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 1.5e-30 137.5 161 64.0
CBR_g131 Chara braunii HOM05D004084 ORTHO05D004662 2.5e-30 136.7 210 43.3
CDE11G0350 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.6e-29 134.0 94 64.9
CSS0038115 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.8e-28 130.6 99 57.6
MD03G1166700 Malus domestica HOM05D004084 ORTHO05D004662 2.4e-28 130.2 80 67.5
Cre13.g604750 Chlamydomonas reinhardtii HOM05D004084 ORTHO05D004662 3.1e-28 129.8 165 46.1
CDE11G0877 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.5e-27 127.5 200 41.5
CDE11G0903 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.9e-25 120.6 131 48.9
PRCOL_00000691 Prasinoderma coloniale HOM05D004084 ORTHO05D004662 7.9e-24 115.2 164 43.3
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 4.8e-21 105.9 60 73.3
CSS0029213 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 2.2e-18 97.1 163 42.3
MD03G1166600 Malus domestica HOM05D004084 ORTHO05D004662 1.9e-17 94.0 162 42.0
EL10Ac8g18304 Beta vulgaris HOM05D004084 ORTHO05D004662 3.6e-16 89.7 64 57.8
EL10Ac8g18303 Beta vulgaris HOM05D004084 ORTHO05D004662 1.8e-15 87.4 98 41.8
CARHR193520 Cardamine hirsuta HOM05D004084 ORTHO05D004662 2.3e-15 87.0 68 64.7
Oeu061709.1 Olea europaea HOM05D004084 ORTHO05D004662 2.3e-15 87.0 160 47.5
CSS0040984 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 5.1e-15 85.9 161 47.2
arahy.Tifrunner.gnm1.ann1.QA9X4A Arachis hypogaea HOM05D004084 ORTHO05D004662 2.0e-14 84.0 163 46.6
AUR62000187 Chenopodium quinoa HOM05D004084 ORTHO05D004662 2.5e-14 83.6 165 44.2
Aqoxy2G00377 Aquilegia oxysepala HOM05D004084 ORTHO05D004662 9.7e-14 81.6 255 29.8
Phvul.006G030800 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 2.2e-13 80.5 154 37.7
Pp3c4_28300 Physcomitrium patens HOM05D004084 ORTHO05D004662 5.3e-12 75.9 55 58.2
arahy.Tifrunner.gnm1.ann1.57BBZ5 Arachis hypogaea HOM05D004084 ORTHO05D004662 6.9e-12 75.5 93 59.1
BraA10t44098Z Brassica rapa HOM05D004084 ORTHO05D004662 1.2e-11 74.7 91 47.3
A10p20270 Brassica napus HOM05D004084 ORTHO05D004662 2.6e-11 73.6 91 47.3
Sabra16G0170200 Salix brachista HOM05D004084 ORTHO05D004662 1.7e-10 70.9 169 42.6
SHI55208 Sapria himalayana HOM05D004084 ORTHO05D004662 1.7e-10 70.9 144 41.7
Nn7g36696 Nelumbo nucifera HOM05D004084 ORTHO05D004662 3.8e-10 69.7 100 51.0
TPR.G27271 Trifolium pratense HOM05D004084 ORTHO05D004662 2.5e-09 67.0 148 37.2
Haze_23225 Corylus avellana HOM05D004084 ORTHO05D004662 1.6e-08 64.3 68 50.0
MBI19_g25614_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 3.6e-08 63.2 50 52.0
QL01p017234 Quercus lobata HOM05D004084 ORTHO05D004662 4.7e-08 62.8 52 50.0
Sed0017072 Sechium edule HOM05D004084 ORTHO05D004662 6.1e-08 62.4 113 34.5
COL.COLO4_35674 Corchorus olitorius HOM05D004084 ORTHO05D004662 7.9e-08 62.0 69 53.6
Ah.13g074550 Amaranthus hybridus HOM05D007775 ORTHO05D009858 3.9e-07 59.7 51 49.0
Ciclev10005542m.g Citrus clementina HOM05D007775 ORTHO05D009858 8.8e-07 58.5 71 36.6
AUR62006538 Chenopodium quinoa HOM05D001938 ORTHO05D001965 2.0e-06 57.4 99 53.5
Duzib151G1205 Durio zibethinus HOM05D007775 ORTHO05D009858 2.0e-06 57.4 74 39.2


User provided reference genes

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