Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 0.0e+00 1156.0 591 100.0
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 0.0e+00 1106.3 591 96.3
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 0.0e+00 1104.4 591 96.1
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 1.4e-302 1042.3 602 88.7
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 4.0e-302 1040.8 602 89.0
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 1.5e-301 1038.9 602 89.0
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 1.7e-300 1035.4 610 88.0
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 3.7e-300 1034.2 610 87.5
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 1.8e-294 1015.4 602 86.7
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 3.2e-291 1004.6 605 85.1
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 1.9e-288 995.3 525 97.7
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 3.3e-288 994.6 605 84.1
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 1.4e-286 989.2 602 85.2
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 7.6e-285 983.4 615 82.8
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 5.3e-278 960.7 598 85.3
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 3.0e-249 865.1 531 83.6
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 9.4e-243 843.6 591 74.5
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 3.0e-217 758.8 576 64.6
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 1.1e-214 750.4 599 62.1
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 1.3e-212 743.4 569 65.6
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 5.5e-211 738.0 577 63.8
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 7.2e-211 737.6 600 62.0
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 4.7e-210 734.9 584 63.9
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 5.2e-209 731.5 579 63.0
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 5.2e-209 731.5 574 62.2
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 2.0e-208 729.6 573 62.1
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 1.6e-205 719.9 576 62.5
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 5.9e-205 718.0 591 62.1
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 5.9e-205 718.0 562 64.4
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 3.9e-204 715.3 575 61.6
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 2.5e-203 712.6 600 62.3
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 4.3e-203 711.8 571 62.5
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 5.6e-203 711.4 600 62.5
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 9.5e-203 710.7 600 62.5
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 1.2e-202 710.3 600 60.5
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 1.0e-201 707.2 578 61.1
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 2.3e-201 706.1 602 60.0
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 2.3e-201 706.1 587 60.6
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 1.5e-200 703.4 602 58.0
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 4.4e-200 701.8 599 59.1
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 5.8e-200 701.4 573 61.8
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 7.5e-200 701.0 591 60.6
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 1.2e-197 693.7 574 60.3
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 4.6e-197 691.8 543 63.2
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 1.7e-196 689.9 582 59.5
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 2.3e-196 689.5 580 60.3
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 3.0e-196 689.1 516 64.3
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 3.6e-194 682.2 600 58.2
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 3.6e-194 682.2 585 59.7
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 4.7e-194 681.8 576 59.0
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 8.1e-194 681.0 574 59.1
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 4.0e-193 678.7 583 60.9
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 4.0e-193 678.7 571 59.7
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 2.0e-192 676.4 574 59.4
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 2.6e-192 676.0 586 58.4
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 4.4e-192 675.2 579 59.8
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 7.5e-192 674.5 583 59.0
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 2.2e-191 672.9 573 58.8
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 2.9e-191 672.5 598 57.4
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 8.3e-191 671.0 522 63.0
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 2.4e-190 669.5 586 58.0
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 2.4e-190 669.5 571 58.8
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 3.2e-190 669.1 578 59.2
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 4.1e-190 668.7 580 60.9
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 9.2e-190 667.5 590 57.5
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 1.6e-189 666.8 601 58.2
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 2.7e-189 666.0 522 62.6
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.3e-188 663.7 522 62.6
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 1.5e-187 660.2 782 46.7
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 1.9e-187 659.8 516 62.4
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 3.3e-187 659.1 610 55.9
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 1.6e-186 656.8 542 62.5
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 3.1e-185 652.5 605 55.5
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 1.2e-184 650.6 600 57.0
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 2.0e-184 649.8 579 57.3
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 4.4e-184 648.7 542 58.9
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 2.2e-183 646.4 596 57.0
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 2.4e-182 642.9 588 56.6
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 2.4e-182 642.9 574 56.8
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 1.2e-181 640.6 579 57.2
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 7.8e-181 637.9 596 56.4
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 1.0e-180 637.5 636 53.3
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 1.5e-176 623.6 599 54.4
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 2.0e-176 623.2 551 57.4
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 3.2e-174 615.9 576 55.6
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 3.5e-173 612.5 576 55.4
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 4.9e-167 592.0 554 56.3
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 1.1e-166 590.9 540 57.0
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 7.1e-166 588.2 486 59.1
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 7.3e-163 578.2 566 53.7
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 2.8e-162 576.2 596 52.7
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 3.0e-156 556.2 599 50.8
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 5.6e-155 552.0 563 51.7
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 1.6e-146 523.9 605 46.4
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 4.1e-145 519.2 472 56.8
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 1.2e-144 517.7 356 71.1
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 1.2e-125 454.5 572 44.9
Duzib168G1271 Durio zibethinus HOM05D005072 ORTHO05D006209 4.4e-115 419.5 385 55.3
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 3.7e-114 416.4 444 48.0
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 1.2e-112 411.4 505 43.8
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 5.0e-111 406.0 304 65.5
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 1.6e-109 401.0 535 41.9
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 5.7e-107 392.5 560 39.6
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 7.0e-105 385.6 507 41.2
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 6.5e-103 379.0 337 56.4
CDE07G0611 Ceratophyllum demersum HOM05D005072 ORTHO05D006209 6.8e-76 289.3 216 67.6
Actinidia29952 Actinidia chinensis HOM05D005072 ORTHO05D006209 3.2e-73 280.4 260 55.0
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 1.9e-70 271.2 396 40.9
Glyma.14G037400 Glycine max HOM05D005072 ORTHO05D006209 4.3e-70 270.0 216 62.5
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 1.8e-68 264.6 576 31.2
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 4.0e-68 263.5 382 35.9
Aqoxy279s001 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 3.8e-66 256.9 264 50.8
Os03g0377300 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 8.4e-66 255.8 342 41.5
PGSC0003DMG403022702 Solanum tuberosum HOM05D005072 ORTHO05D006209 2.0e-59 234.6 181 64.1
Actinidia27132 Actinidia chinensis HOM05D005072 ORTHO05D006209 7.1e-41 172.9 173 52.6
AL340U10010 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 8.7e-39 166.0 94 85.1
SEGI_30846 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 3.1e-36 157.5 116 69.8
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 4.0e-36 157.1 123 58.5
Lj1A297G59 Lonicera japonica HOM05D005072 ORTHO05D006209 1.0e-34 152.5 112 60.7
Hma1.2p1_2592F.1_g325070 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 2.1e-29 134.8 112 56.2
ECA233G6112 Erigeron canadensis HOM05D005072 ORTHO05D006209 4.5e-27 127.1 212 37.3
Cre14.g610351 Chlamydomonas reinhardtii HOM05D005072 ORTHO05D006209 2.7e-24 117.9 373 27.9
Hma1.2p1_2592F.1_g325060 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 8.7e-23 112.8 110 51.8
Os03g0356470 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 1.1e-22 112.5 147 42.2
Lsat_1_v5_gn_4_59101 Lactuca sativa HOM05D005072 ORTHO05D006209 5.7e-22 110.2 100 49.0
MCO07G292 Micromonas commoda HOM05D005072 ORTHO05D006209 4.8e-21 107.1 562 22.8
VMungo1127G1498 Vigna mungo HOM05D005072 ORTHO05D006209 3.1e-20 104.4 80 55.0
VMungo1215G1729 Vigna mungo HOM05D005072 ORTHO05D006209 4.1e-20 104.0 80 55.0
VMungo1245G0001 Vigna mungo HOM05D005072 ORTHO05D006209 1.5e-19 102.1 82 53.7
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 1.7e-18 98.6 128 38.3
Nn001s41348 Nelumbo nucifera HOM05D005072 ORTHO05D006209 2.1e-16 91.7 75 54.7
arahy.Tifrunner.gnm1.ann1.ELE64U Arachis hypogaea HOM05D005072 ORTHO05D006209 3.9e-15 87.4 87 44.8
SEGI_31829 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 7.4e-14 83.2 138 39.1
ECA248G3958 Erigeron canadensis HOM05D005072 ORTHO05D006209 4.1e-12 77.4 150 34.0
C03p06490 Brassica napus HOM05D005072 ORTHO05D006209 6.9e-12 76.6 53 73.6
Cfa026272 Carpinus fangiana HOM05D005072 ORTHO05D126095 5.0e-10 70.5 242 23.6
arahy.Tifrunner.gnm1.ann1.N4LM1Q Arachis hypogaea HOM05D005072 ORTHO05D007788 7.2e-09 66.6 58 58.6
AL3G48430 Arabidopsis lyrata HOM05D000229 ORTHO05D016563 2.1e-08 65.1 35 82.9
SMO025G0001 Selaginella moellendorffii HOM05D012532 ORTHO05D006209 4.7e-08 63.9 138 33.3
Oeu032057.1 Olea europaea HOM05D005072 ORTHO05D006209 5.7e-06 57.0 143 32.9


User provided reference genes

Program Settings