Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p05100 Brassica napus HOM05D003951 ORTHO05D033496 2.4e-78 295.4 148 100.0
BraA03t09844Z Brassica rapa HOM05D003951 ORTHO05D033496 3.4e-77 291.6 146 99.3
Thhalv10012570m.g Eutrema salsugineum HOM05D003951 ORTHO05D005378 3.9e-28 128.6 121 63.6
Sp6g32040 Schrenkiella parvula HOM05D003951 ORTHO05D005378 3.9e-28 128.6 121 63.6
BcaC03g13375 Brassica carinata HOM05D003951 ORTHO05D005378 8.6e-28 127.5 121 62.8
BcaNung01934 Brassica carinata HOM05D003951 ORTHO05D005378 8.6e-28 127.5 121 62.8
C02p05210 Brassica napus HOM05D003951 ORTHO05D005378 8.6e-28 127.5 121 62.8
BolC2t06471H Brassica oleracea HOM05D003951 ORTHO05D005378 8.6e-28 127.5 121 62.8
BcaB08g37043 Brassica carinata HOM05D003951 ORTHO05D005378 1.5e-27 126.7 121 62.8
BcaC04g19214 Brassica carinata HOM05D003951 ORTHO05D005378 1.5e-27 126.7 121 62.8
A10p26200 Brassica napus HOM05D003951 ORTHO05D005378 1.5e-27 126.7 121 62.8
C09p65250 Brassica napus HOM05D003951 ORTHO05D005378 1.5e-27 126.7 121 62.8
BolC9t59353H Brassica oleracea HOM05D003951 ORTHO05D005378 1.5e-27 126.7 121 62.8
BraA10t44677Z Brassica rapa HOM05D003951 ORTHO05D005378 1.5e-27 126.7 121 62.8
Aa31LG3G15640 Aethionema arabicum HOM05D003951 ORTHO05D005378 5.6e-27 124.8 121 62.8
AT5G11560 Arabidopsis thaliana HOM05D003951 ORTHO05D005378 9.5e-27 124.0 121 62.0
Carub.0006s1003 Capsella rubella HOM05D003951 ORTHO05D005378 1.6e-26 123.2 121 62.0
CARHR201660 Cardamine hirsuta HOM05D003951 ORTHO05D005378 2.1e-26 122.9 121 61.2
AL6G22230 Arabidopsis lyrata HOM05D003951 ORTHO05D005378 3.6e-26 122.1 121 61.2
A02p01070 Brassica napus HOM05D003951 ORTHO05D005378 2.3e-25 119.4 115 62.6
BraA02t05087Z Brassica rapa HOM05D003951 ORTHO05D005378 2.3e-25 119.4 115 62.6
THA.LOC104814774 Tarenaya hassleriana HOM05D003951 ORTHO05D005378 1.2e-24 117.1 121 57.9
Ciclev10007348m.g Citrus clementina HOM05D003951 ORTHO05D005378 1.7e-23 113.2 121 57.0
Hma1.2p1_0590F.1_g185010 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 1.7e-23 113.2 121 58.7
Oeu038879.1 Olea europaea HOM05D003951 ORTHO05D005378 1.7e-23 113.2 121 57.0
Haze_16527 Corylus avellana HOM05D003951 ORTHO05D005378 3.7e-23 112.1 121 56.2
Migut.J00480 Erythranthe guttata HOM05D003951 ORTHO05D005378 3.7e-23 112.1 121 57.0
Duzib187G0774 Durio zibethinus HOM05D003951 ORTHO05D005378 4.9e-23 111.7 121 55.4
GSVIVG01035648001 Vitis vinifera HOM05D003951 ORTHO05D005378 4.9e-23 111.7 121 57.0
SGA_v2.0_scaffold40G15445 Striga asiatica HOM05D003951 ORTHO05D005378 6.4e-23 111.3 120 57.5
SGA_v2.0_scaffold657G53382 Striga asiatica HOM05D003951 ORTHO05D005378 6.4e-23 111.3 120 57.5
MSTRG.19211 Avicennia marina HOM05D003951 ORTHO05D005378 8.3e-23 110.9 121 53.7
Oeu017004.2 Olea europaea HOM05D003951 ORTHO05D005378 8.3e-23 110.9 121 55.4
Cfa013355 Carpinus fangiana HOM05D003951 ORTHO05D005378 1.1e-22 110.5 121 56.2
CSS0015540 Camellia sinensis var. sinensis HOM05D003951 ORTHO05D005378 1.4e-22 110.2 121 56.2
TWI32G0786 Tripterygium wilfordii HOM05D003951 ORTHO05D005378 1.4e-22 110.2 121 56.2
Atru.chr7.2135 Acer truncatum HOM05D003951 ORTHO05D005378 1.9e-22 109.8 121 55.4
CANSAT25G2930 Cannabis sativa HOM05D003951 ORTHO05D005378 1.9e-22 109.8 121 56.2
Dinv14244 Davidia involucrata HOM05D003951 ORTHO05D005378 1.9e-22 109.8 121 54.5
Dinv30270 Davidia involucrata HOM05D003951 ORTHO05D005378 1.9e-22 109.8 121 57.0
Lalb_Chr23g0269551 Lupinus albus HOM05D003951 ORTHO05D005378 1.9e-22 109.8 121 55.4
Nn2g11661 Nelumbo nucifera HOM05D003951 ORTHO05D005378 1.9e-22 109.8 121 55.4
TAR626G1339 Trochodendron aralioides HOM05D003951 ORTHO05D005378 1.9e-22 109.8 121 56.2
CANSAT56G0789 Cannabis sativa HOM05D003951 ORTHO05D005378 2.4e-22 109.4 121 55.4
CANSAT56G2409 Cannabis sativa HOM05D003951 ORTHO05D005378 2.4e-22 109.4 121 55.4
CiPaw.08G024600 Carya illinoinensis HOM05D003951 ORTHO05D005378 2.4e-22 109.4 121 56.2
Gohir.D13G192700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 2.4e-22 109.4 120 55.8
Gorai.013G218700 Gossypium raimondii HOM05D003951 ORTHO05D005378 2.4e-22 109.4 120 55.8
Manes.03G061800 Manihot esculenta HOM05D003951 ORTHO05D005378 2.4e-22 109.4 121 56.2
Glyma.04G082000 Glycine max HOM05D003951 ORTHO05D005378 3.2e-22 109.0 121 55.4
Glyma.06G083700 Glycine max HOM05D003951 ORTHO05D005378 3.2e-22 109.0 121 55.4
Lj1g0011830 Lotus japonicus HOM05D003951 ORTHO05D005378 3.2e-22 109.0 121 55.4
TAR383G0035 Trochodendron aralioides HOM05D003951 ORTHO05D005378 3.2e-22 109.0 121 56.2
Actinidia14667 Actinidia chinensis HOM05D003951 ORTHO05D005378 4.1e-22 108.6 121 55.4
Eucgr.C02905 Eucalyptus grandis HOM05D003951 ORTHO05D005378 4.1e-22 108.6 121 56.2
MBI04_g14936_MAGBIO Magnolia biondii HOM05D003951 ORTHO05D005378 5.4e-22 108.2 121 56.2
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 7.0e-22 107.8 154 47.4
Nitab4.5_0008726g0020 Nicotiana tabacum HOM05D003951 ORTHO05D005378 7.0e-22 107.8 121 54.5
Peaxi162Scf01195g00118 Petunia axillaris HOM05D003951 ORTHO05D005378 7.0e-22 107.8 121 53.7
CAN.G1759.1 Capsicum annuum HOM05D003951 ORTHO05D005378 9.2e-22 107.5 121 54.5
Gohir.A06G094100 Gossypium hirsutum HOM05D003951 ORTHO05D005378 9.2e-22 107.5 121 53.7
Gohir.A13G186000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 9.2e-22 107.5 120 55.0
Gohir.D06G093700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 9.2e-22 107.5 121 53.7
Gorai.010G108200 Gossypium raimondii HOM05D003951 ORTHO05D005378 9.2e-22 107.5 121 53.7
Prupe.1G450600 Prunus persica HOM05D003951 ORTHO05D005378 9.2e-22 107.5 121 55.4
SalBow3G1921 Salvia bowleyana HOM05D003951 ORTHO05D005378 9.2e-22 107.5 121 54.5
Thecc.09G042400 Theobroma cacao HOM05D003951 ORTHO05D005378 9.2e-22 107.5 121 54.5
Cc06_g04830 Coffea canephora HOM05D003951 ORTHO05D005378 1.2e-21 107.1 121 54.5
QL12p029450 Quercus lobata HOM05D003951 ORTHO05D005378 1.2e-21 107.1 121 55.4
Sc23g0005190 Simmondsia chinensis HOM05D003951 ORTHO05D005378 1.2e-21 107.1 121 55.4
DCAR_004489 Daucus carota HOM05D003951 ORTHO05D005378 1.6e-21 106.7 120 55.0
ECA233G3193 Erigeron canadensis HOM05D003951 ORTHO05D005378 1.6e-21 106.7 121 55.4
Nitab4.5_0010350g0010 Nicotiana tabacum HOM05D003951 ORTHO05D005378 1.6e-21 106.7 121 53.7
Sabra06G0187900 Salix brachista HOM05D003951 ORTHO05D005378 1.6e-21 106.7 121 54.5
Ah.10g035090 Amaranthus hybridus HOM05D003951 ORTHO05D005378 2.1e-21 106.3 121 52.1
arahy.Tifrunner.gnm1.ann1.6KB6B4 Arachis hypogaea HOM05D003951 ORTHO05D005378 2.1e-21 106.3 121 53.7
arahy.Tifrunner.gnm1.ann1.ZA6ZKK Arachis hypogaea HOM05D003951 ORTHO05D005378 2.1e-21 106.3 121 53.7
FvH4_2g35850 Fragaria vesca HOM05D003951 ORTHO05D005378 2.1e-21 106.3 121 55.4
FAN15G0863 Fragaria x ananassa HOM05D003951 ORTHO05D005378 2.1e-21 106.3 121 55.4
FAN20G1017 Fragaria x ananassa HOM05D003951 ORTHO05D005378 2.1e-21 106.3 121 55.4
FAN27G3265 Fragaria x ananassa HOM05D003951 ORTHO05D005378 2.1e-21 106.3 121 55.4
Medtr3g110090 Medicago truncatula HOM05D003951 ORTHO05D005378 2.1e-21 106.3 121 53.7
Medtr3g110140 Medicago truncatula HOM05D003951 ORTHO05D005378 2.1e-21 106.3 121 53.7
Nitab4.5_0000132g0420 Nicotiana tabacum HOM05D003951 ORTHO05D005378 2.1e-21 106.3 121 53.7
TPR.G1335 Trifolium pratense HOM05D003951 ORTHO05D005378 2.1e-21 106.3 121 53.7
Ah.16g105530 Amaranthus hybridus HOM05D003951 ORTHO05D005378 2.7e-21 105.9 121 53.7
Psat5g022720 Pisum sativum HOM05D003951 ORTHO05D005378 2.7e-21 105.9 121 52.9
EL10Ac2g04048 Beta vulgaris HOM05D003951 ORTHO05D005378 3.5e-21 105.5 121 52.9
Potri.018G039800 Populus trichocarpa HOM05D003951 ORTHO05D005378 3.5e-21 105.5 121 54.5
Sabra18G0039700 Salix brachista HOM05D003951 ORTHO05D005378 3.5e-21 105.5 120 55.0
ATR0315G102 Amborella trichopoda HOM05D003951 ORTHO05D005378 6.0e-21 104.8 121 53.7
Lalb_Chr08g0243161 Lupinus albus HOM05D003951 ORTHO05D005378 6.0e-21 104.8 121 52.1
Phvul.009G107800 Phaseolus vulgaris HOM05D003951 ORTHO05D005378 6.0e-21 104.8 121 53.7
VMungo1309G1090 Vigna mungo HOM05D003951 ORTHO05D005378 6.0e-21 104.8 121 52.9
AUR62043518 Chenopodium quinoa HOM05D003951 ORTHO05D005378 7.8e-21 104.4 121 51.2
Ca_15606_v3 Cicer arietinum L. HOM05D003951 ORTHO05D005378 7.8e-21 104.4 121 52.9
RcHm_v2.0_Chr6g0305971 Rosa chinensis HOM05D003951 ORTHO05D005378 7.8e-21 104.4 121 53.7
HanXRQChr08g0221151 Helianthus annuus HOM05D003951 ORTHO05D005378 1.0e-20 104.0 121 53.7
Lj7C704T11 Lonicera japonica HOM05D003951 ORTHO05D005378 1.0e-20 104.0 121 53.7
PGR044G0887 Punica granatum HOM05D003951 ORTHO05D005378 1.0e-20 104.0 121 53.7
Solyc09g008610.4 Solanum lycopersicum HOM05D003951 ORTHO05D005378 1.0e-20 104.0 121 52.1
AUR62009306 Chenopodium quinoa HOM05D003951 ORTHO05D005378 1.3e-20 103.6 121 51.2
Potri.006G240300 Populus trichocarpa HOM05D003951 ORTHO05D005378 1.3e-20 103.6 121 53.7
Hund19527 Selenicereus undatus HOM05D003951 ORTHO05D005378 1.3e-20 103.6 121 52.1
Sopen09g003410 Solanum pennellii HOM05D003951 ORTHO05D005378 1.3e-20 103.6 121 51.2
PGSC0003DMG400012982 Solanum tuberosum HOM05D003951 ORTHO05D005378 1.3e-20 103.6 121 51.2
AUR62041721 Chenopodium quinoa HOM05D003951 ORTHO05D005378 1.7e-20 103.2 121 50.4
MD08G1115900 Malus domestica HOM05D003951 ORTHO05D005378 1.7e-20 103.2 121 53.7
Cpa.g.sc7.257 Carica papaya HOM05D003951 ORTHO05D005378 2.3e-20 102.8 121 53.7
Lj8A588G18 Lonicera japonica HOM05D003951 ORTHO05D005378 2.3e-20 102.8 121 52.1
PSO210G0075 Papaver somniferum HOM05D003951 ORTHO05D005378 3.9e-20 102.1 121 52.1
PSO210G7231 Papaver somniferum HOM05D003951 ORTHO05D005378 3.9e-20 102.1 121 52.1
Aqoxy7G01531 Aquilegia oxysepala HOM05D003951 ORTHO05D005378 6.6e-20 101.3 121 50.4
CsaV3_2G030980 Cucumis sativus L. HOM05D003951 ORTHO05D005378 6.6e-20 101.3 121 51.2
Lsat_1_v5_gn_6_63741 Lactuca sativa HOM05D003951 ORTHO05D005378 6.6e-20 101.3 128 51.6
MD15G1095600 Malus domestica HOM05D003951 ORTHO05D005378 8.6e-20 100.9 121 52.9
Os05g0230600 Oryza sativa ssp. japonica HOM05D003951 ORTHO05D005378 1.9e-19 99.8 121 52.1
MELO3C011151.2 Cucumis melo HOM05D003951 ORTHO05D005378 2.5e-19 99.4 121 49.6
Sed0007642 Sechium edule HOM05D003951 ORTHO05D005378 3.3e-19 99.0 121 48.8
Sed0024259 Sechium edule HOM05D003951 ORTHO05D005378 3.3e-19 99.0 121 48.8
ClCG08G012310 Citrullus lanatus HOM05D003951 ORTHO05D005378 4.3e-19 98.6 120 50.0
Zm00001eb350390 Zea mays HOM05D003951 ORTHO05D005378 4.3e-19 98.6 121 52.1
Gohir.A08G250500 Gossypium hirsutum HOM05D003951 ORTHO05D005378 6.2e-18 94.7 121 48.8
Gohir.A08G250566 Gossypium hirsutum HOM05D003951 ORTHO05D005378 6.2e-18 94.7 121 48.8
Gohir.D08G272000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 6.2e-18 94.7 121 48.8
Gorai.004G290400 Gossypium raimondii HOM05D003951 ORTHO05D005378 6.2e-18 94.7 121 48.8
CDE09G1231 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 1.1e-17 94.0 121 47.1
Ah.16g105420 Amaranthus hybridus HOM05D003951 ORTHO05D005378 1.4e-17 93.6 150 43.3
CDE02G1137 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 1.2e-16 90.5 121 45.5
Pp3c24_6940 Physcomitrium patens HOM05D003951 ORTHO05D005378 1.5e-16 90.1 117 46.2
vmacro10453 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 1.5e-16 90.1 134 47.0
Zm00001eb284300 Zea mays HOM05D003951 ORTHO05D005378 2.0e-16 89.7 121 49.6
SHI18663 Sapria himalayana HOM05D003951 ORTHO05D005378 3.4e-16 89.0 120 46.7
Nn3g18131 Nelumbo nucifera HOM05D003951 ORTHO05D005378 8.3e-15 84.3 103 53.4
BcaB01g05473 Brassica carinata HOM05D003951 ORTHO05D005378 1.1e-14 84.0 44 95.5
C03p05840 Brassica napus HOM05D003951 ORTHO05D005378 1.1e-14 84.0 44 95.5
Mapoly0001s0045 Marchantia polymorpha HOM05D003951 ORTHO05D005378 1.9e-14 83.2 117 42.7
CBR_g46226 Chara braunii HOM05D003951 ORTHO05D005378 3.9e-12 75.5 115 40.9
BolC3t13096H Brassica oleracea HOM05D003951 ORTHO05D005378 2.8e-10 69.3 44 86.4
HPP92_003925 Vanilla planifolia HOM05D003951 ORTHO05D005378 2.8e-10 69.3 96 46.9
Nitab4.5_0004281g0080 Nicotiana tabacum HOM05D003951 ORTHO05D005378 5.2e-09 65.1 40 85.0
Peaxi162Scf00110g00822 Petunia axillaris HOM05D003951 ORTHO05D005378 1.2e-08 63.9 44 68.2
Hma1.2p1_1163F.1_g262780 Hydrangea macrophylla HOM05D003951 ORTHO05D033496 2.6e-08 62.8 41 78.0
SMO361G0709 Selaginella moellendorffii HOM05D003951 ORTHO05D005378 1.3e-07 60.5 44 63.6


User provided reference genes

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