Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p05000 Brassica napus HOM05D004036 ORTHO05D004576 2.2e-83 312.4 171 100.0
C03p05740 Brassica napus HOM05D004036 ORTHO05D004576 8.0e-78 293.9 171 96.5
BcaB01g06306 Brassica carinata HOM05D004036 ORTHO05D004576 3.0e-77 292.0 171 93.6
BolC3t13087H Brassica oleracea HOM05D004036 ORTHO05D004576 1.5e-76 289.7 171 95.3
BcaB01g05484 Brassica carinata HOM05D004036 ORTHO05D004576 4.4e-76 288.1 171 94.7
Sp6g32160 Schrenkiella parvula HOM05D004036 ORTHO05D004576 6.4e-59 231.1 171 78.9
A10p26310 Brassica napus HOM05D004036 ORTHO05D004576 2.3e-56 222.6 172 72.7
BcaC04g19226 Brassica carinata HOM05D004036 ORTHO05D004576 1.1e-55 220.3 168 73.2
C09p65420 Brassica napus HOM05D004036 ORTHO05D004576 2.5e-55 219.2 168 72.6
BolC9t59367H Brassica oleracea HOM05D004036 ORTHO05D004576 2.5e-55 219.2 168 72.6
BcaB08g37059 Brassica carinata HOM05D004036 ORTHO05D004576 1.2e-54 216.9 174 75.3
Thhalv10014836m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 5.8e-52 208.0 177 73.4
AL6G22100 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 1.1e-50 203.8 176 75.0
BraA10t44688Z Brassica rapa HOM05D004036 ORTHO05D004576 1.1e-50 203.8 176 73.9
Carub.0006s0989 Capsella rubella HOM05D004036 ORTHO05D004576 1.0e-48 197.2 173 74.6
AT5G11440 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 2.5e-47 192.6 174 73.0
A02p01010 Brassica napus HOM05D004036 ORTHO05D004576 3.6e-46 188.7 173 71.7
BraA02t05082Z Brassica rapa HOM05D004036 ORTHO05D004576 3.6e-46 188.7 173 71.7
CARHR201790 Cardamine hirsuta HOM05D004036 ORTHO05D004576 4.0e-45 185.3 179 69.3
BcaNung01927 Brassica carinata HOM05D004036 ORTHO05D004576 6.8e-45 184.5 172 66.9
BcaC03g13367 Brassica carinata HOM05D004036 ORTHO05D004576 8.4e-43 177.6 159 67.9
C02p05040 Brassica napus HOM05D004036 ORTHO05D004576 1.9e-39 166.4 159 68.6
Aa31LG3G15750 Aethionema arabicum HOM05D004036 ORTHO05D004576 1.1e-34 150.6 184 55.4
Thhalv10004997m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 6.0e-33 144.8 169 55.0
Sp2g22000 Schrenkiella parvula HOM05D004036 ORTHO05D004576 9.0e-29 131.0 168 51.2
CARHR187840 Cardamine hirsuta HOM05D004036 ORTHO05D004576 6.4e-27 124.8 154 50.6
THA.LOC104799217 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 2.4e-26 122.9 166 46.4
C07p42280 Brassica napus HOM05D004036 ORTHO05D004576 4.2e-26 122.1 169 49.1
BolC7t44757H Brassica oleracea HOM05D004036 ORTHO05D004576 4.2e-26 122.1 169 49.1
THA.LOC104815044 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 9.3e-26 120.9 183 47.0
A06p36250 Brassica napus HOM05D004036 ORTHO05D004576 1.2e-25 120.6 169 50.3
BraA06t26547Z Brassica rapa HOM05D004036 ORTHO05D004576 1.2e-25 120.6 169 50.3
Aa31LG11G4630 Aethionema arabicum HOM05D004036 ORTHO05D004576 2.7e-25 119.4 184 47.8
AL6G37340 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 1.0e-24 117.5 184 48.4
BolC2t12008H Brassica oleracea HOM05D004036 ORTHO05D004576 1.1e-23 114.0 158 46.8
BcaNung07259 Brassica carinata HOM05D000175 ORTHO05D000481 3.3e-23 112.5 165 47.3
Carub.0006s2340 Capsella rubella HOM05D004036 ORTHO05D004576 1.3e-22 110.5 170 46.5
C02p59450 Brassica napus HOM05D004036 ORTHO05D004576 6.2e-22 108.2 167 44.3
A02p39670 Brassica napus HOM05D004036 ORTHO05D004576 8.1e-22 107.8 167 46.1
BraA02t08932Z Brassica rapa HOM05D004036 ORTHO05D004576 8.1e-22 107.8 167 46.1
AT5G25540 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 1.1e-21 107.5 187 44.9
BcaB04g19786 Brassica carinata HOM05D004036 ORTHO05D004576 1.5e-20 103.6 155 45.8
BraA03t09836Z Brassica rapa HOM05D002580 ORTHO05D002811 3.4e-20 102.4 59 93.2
BcaB07g29991 Brassica carinata HOM05D004036 ORTHO05D004576 3.8e-19 99.0 172 44.2
Duzib150G0431 Durio zibethinus HOM05D004036 ORTHO05D004576 4.2e-18 95.5 204 37.3
Hma1.2p1_0003F.1_g003650 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 2.1e-17 93.2 173 38.7
BolC2t06459H Brassica oleracea HOM05D004036 ORTHO05D004576 2.7e-17 92.8 98 63.3
Atru.chr7.2325 Acer truncatum HOM05D004036 ORTHO05D004576 3.5e-17 92.4 192 38.5
Gohir.D06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.5e-17 92.4 205 38.5
RcHm_v2.0_Chr6g0312751 Rosa chinensis HOM05D004036 ORTHO05D004576 3.5e-17 92.4 191 36.6
Ciclev10009480m.g Citrus clementina HOM05D004036 ORTHO05D004576 4.6e-17 92.0 201 36.8
Cpa.g.sc91.6 Carica papaya HOM05D004036 ORTHO05D004576 6.0e-17 91.7 116 47.4
Duzib187G1985 Durio zibethinus HOM05D004036 ORTHO05D004576 7.9e-17 91.3 113 50.4
TWI63G0992 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 7.9e-17 91.3 178 36.0
COL.COLO4_24066 Corchorus olitorius HOM05D004036 ORTHO05D004576 1.8e-16 90.1 194 35.1
Thecc.09G144100 Theobroma cacao HOM05D004036 ORTHO05D004576 1.8e-16 90.1 194 38.1
Gohir.D01G158400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.0e-16 89.4 169 39.1
Manes.16G068200 Manihot esculenta HOM05D004036 ORTHO05D004576 3.0e-16 89.4 198 37.9
CiPaw.08G015700 Carya illinoinensis HOM05D004036 ORTHO05D004576 3.9e-16 89.0 184 37.5
Cfa013210 Carpinus fangiana HOM05D004036 ORTHO05D004576 6.7e-16 88.2 180 38.9
DCAR_003061 Daucus carota HOM05D004036 ORTHO05D004576 8.7e-16 87.8 176 35.8
Eucgr.C01818 Eucalyptus grandis HOM05D004036 ORTHO05D004576 8.7e-16 87.8 169 37.3
FvH4_2g30160 Fragaria vesca HOM05D004036 ORTHO05D004576 8.7e-16 87.8 198 36.9
FAN20G2367 Fragaria x ananassa HOM05D004036 ORTHO05D004576 8.7e-16 87.8 198 36.9
FAN24G0425 Fragaria x ananassa HOM05D004036 ORTHO05D004576 8.7e-16 87.8 198 36.9
FAN27G0504 Fragaria x ananassa HOM05D004036 ORTHO05D004576 8.7e-16 87.8 198 36.9
Gohir.D05G335100 Gossypium hirsutum HOM05D004036 ORTHO05D004576 8.7e-16 87.8 147 38.8
Gohir.D09G022200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 8.7e-16 87.8 152 36.8
Gohir.D09G023175 Gossypium hirsutum HOM05D004036 ORTHO05D004576 8.7e-16 87.8 149 37.6
Lsat_1_v5_gn_3_108141 Lactuca sativa HOM05D004036 ORTHO05D004576 8.7e-16 87.8 152 38.8
Gohir.D05G011350 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.1e-15 87.4 157 36.9
Gorai.009G011700 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.1e-15 87.4 183 36.1
Gorai.008G052900 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.9e-15 86.7 184 38.0
Gohir.A12G241700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.5e-15 86.3 183 37.2
Manes.03G064800 Manihot esculenta HOM05D004036 ORTHO05D004576 2.5e-15 86.3 94 48.9
VMungo0647G1622 Vigna mungo HOM05D004036 ORTHO05D004576 2.5e-15 86.3 184 35.9
FAN15G1681 Fragaria x ananassa HOM05D004036 ORTHO05D004576 3.3e-15 85.9 198 36.4
Dinv35883 Davidia involucrata HOM05D004036 ORTHO05D004576 4.3e-15 85.5 103 48.5
Gohir.A05G010600 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.7e-15 85.1 174 36.8
Gohir.D12G195700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.7e-15 85.1 185 35.7
QL12p031289 Quercus lobata HOM05D004036 ORTHO05D004576 5.7e-15 85.1 183 36.1
Gorai.004G151900 Gossypium raimondii HOM05D004036 ORTHO05D004576 7.4e-15 84.7 191 35.1
Potri.006G246600 Populus trichocarpa HOM05D004036 ORTHO05D004576 7.4e-15 84.7 202 34.2
Prupe.1G466700 Prunus persica HOM05D004036 ORTHO05D004576 7.4e-15 84.7 81 56.8
Gohir.A12G126300 Gossypium hirsutum HOM05D004036 ORTHO05D004576 9.6e-15 84.3 185 35.1
CANSAT56G2568 Cannabis sativa HOM05D004036 ORTHO05D004576 1.6e-14 83.6 174 36.8
Glyma.17G203900 Glycine max HOM05D004036 ORTHO05D004576 1.6e-14 83.6 103 47.6
Medtr1g011280 Medicago truncatula HOM05D004036 ORTHO05D004576 1.6e-14 83.6 174 36.2
Sabra18G0035300 Salix brachista HOM05D004036 ORTHO05D004576 1.6e-14 83.6 195 33.3
Phvul.001G055700 Phaseolus vulgaris HOM05D004036 ORTHO05D004576 2.8e-14 82.8 120 40.8
Gohir.A11G185400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.7e-14 82.4 185 34.6
TAR624G0048 Trochodendron aralioides HOM05D004036 ORTHO05D004576 4.8e-14 82.0 204 33.3
C09p06800 Brassica napus HOM05D004036 ORTHO05D004576 6.2e-14 81.6 141 42.6
BolC9t53601H Brassica oleracea HOM05D004036 ORTHO05D004576 6.2e-14 81.6 141 42.6
ECA240G1837 Erigeron canadensis HOM05D004036 ORTHO05D004576 6.2e-14 81.6 176 34.7
C01p19860 Brassica napus HOM05D004036 ORTHO05D004576 1.1e-13 80.9 117 46.2
BolC1t01914H Brassica oleracea HOM05D004036 ORTHO05D004576 1.1e-13 80.9 117 46.2
Glyma.14G129200 Glycine max HOM05D004036 ORTHO05D004576 1.1e-13 80.9 103 45.6
Gohir.A06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.1e-13 80.9 113 46.0
BcaC09g50856 Brassica carinata HOM05D004036 ORTHO05D004576 2.4e-13 79.7 117 47.0
HanXRQChr13g0409481 Helianthus annuus HOM05D004036 ORTHO05D004576 4.1e-13 79.0 154 34.4
arahy.Tifrunner.gnm1.ann1.AAJ54F Arachis hypogaea HOM05D004036 ORTHO05D004576 5.3e-13 78.6 176 36.4
C07p03200 Brassica napus HOM05D004036 ORTHO05D004576 6.9e-13 78.2 114 46.5
PGR031G0366 Punica granatum HOM05D004036 ORTHO05D004576 6.9e-13 78.2 167 32.9
BolC7t40715H Brassica oleracea HOM05D004036 ORTHO05D004576 1.2e-12 77.4 113 45.1
Oeu045176.1 Olea europaea HOM05D004036 ORTHO05D004576 1.2e-12 77.4 95 48.4
CiPaw.03G235800 Carya illinoinensis HOM05D004036 ORTHO05D004576 1.5e-12 77.0 168 35.1
CsaV3_3G046690 Cucumis sativus L. HOM05D004036 ORTHO05D004576 1.5e-12 77.0 179 36.3
Hma1.2p1_0175F.1_g077210 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 1.5e-12 77.0 167 35.9
arahy.Tifrunner.gnm1.ann1.7NC9IZ Arachis hypogaea HOM05D004036 ORTHO05D004576 2.6e-12 76.3 175 37.1
Lj5g0012132 Lotus japonicus HOM05D004036 ORTHO05D004576 5.8e-12 75.1 145 36.6
MD08G1136600 Malus domestica HOM05D004036 ORTHO05D004576 7.6e-12 74.7 81 54.3
Peaxi162Scf00105g01426 Petunia axillaris HOM05D004036 ORTHO05D004576 7.6e-12 74.7 98 44.9
MSTRG.1647 Avicennia marina HOM05D004036 ORTHO05D004576 1.0e-11 74.3 75 52.0
Lalb_Chr23g0269031 Lupinus albus HOM05D004036 ORTHO05D004576 1.7e-11 73.6 171 36.8
Nitab4.5_0006579g0060 Nicotiana tabacum HOM05D004036 ORTHO05D004576 1.7e-11 73.6 108 41.7
Nitab4.5_0000125g0270 Nicotiana tabacum HOM05D004036 ORTHO05D004576 2.2e-11 73.2 108 41.7
TPR.G20095 Trifolium pratense HOM05D004036 ORTHO05D004576 2.2e-11 73.2 103 43.7
Haze_21623 Corylus avellana HOM05D004036 ORTHO05D004576 2.9e-11 72.8 220 31.4
Lalb_Chr08g0243781 Lupinus albus HOM05D004036 ORTHO05D004576 6.5e-11 71.6 162 36.4
TAR626G0352 Trochodendron aralioides HOM05D004036 ORTHO05D004576 6.5e-11 71.6 97 40.2
CAN.G21.9 Capsicum annuum HOM05D004036 ORTHO05D004576 8.4e-11 71.2 91 45.1
Gorai.010G053700 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.4e-10 70.5 152 37.5
HanXRQChr03g0077811 Helianthus annuus HOM05D004036 ORTHO05D004576 1.4e-10 70.5 64 53.1
SalBow8G4507 Salvia bowleyana HOM05D004036 ORTHO05D004576 1.4e-10 70.5 104 42.3
SalBow8G4816 Salvia bowleyana HOM05D004036 ORTHO05D004576 1.4e-10 70.5 104 42.3
Sabra06G0192900 Salix brachista HOM05D004036 ORTHO05D004576 2.5e-10 69.7 209 30.1
Sopen08g021750 Solanum pennellii HOM05D004036 ORTHO05D004576 3.2e-10 69.3 83 47.0
DCAR_007682 Daucus carota HOM05D004036 ORTHO05D004576 4.2e-10 68.9 111 39.6
Migut.E01501 Erythranthe guttata HOM05D004036 ORTHO05D004576 4.2e-10 68.9 72 51.4
PGSC0003DMG400033628 Solanum tuberosum HOM05D004036 ORTHO05D004576 4.2e-10 68.9 82 46.3
TWI34G1922 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 4.2e-10 68.9 114 36.0
Aqoxy7G01846 Aquilegia oxysepala HOM05D004036 ORTHO05D004576 9.3e-10 67.8 141 34.0
SGA_v2.0_scaffold163G38098 Striga asiatica HOM05D004036 ORTHO05D004576 1.2e-09 67.4 100 41.0
MSTRG.14001 Avicennia marina HOM05D004036 ORTHO05D004576 2.1e-09 66.6 93 43.0
Gohir.A07G032200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.1e-09 66.6 131 35.1
Gohir.A08G237500 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.1e-09 66.6 131 35.1
Solyc08g067810.3 Solanum lycopersicum HOM05D004036 ORTHO05D004576 2.7e-09 66.2 82 43.9
ClCG05G017210 Citrullus lanatus HOM05D004036 ORTHO05D004576 4.6e-09 65.5 90 43.3
QL02p086217 Quercus lobata HOM05D004036 ORTHO05D004576 6.1e-09 65.1 132 34.8
AUR62024838 Chenopodium quinoa HOM05D004036 ORTHO05D004576 7.9e-09 64.7 148 33.1
Psat6g031000 Pisum sativum HOM05D004036 ORTHO05D004576 1.0e-08 64.3 109 38.5
BraA08t33004Z Brassica rapa HOM05D004036 ORTHO05D004576 1.3e-08 63.9 54 63.0
MBI01_g10034_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 3.0e-08 62.8 59 55.9
Sed0025074 Sechium edule HOM05D004036 ORTHO05D004576 3.0e-08 62.8 167 33.5
Cc08_g08300 Coffea canephora HOM05D004036 ORTHO05D004576 3.9e-08 62.4 115 40.0
Gohir.D04G088301 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.1e-08 62.0 63 49.2
Gohir.D12G143101 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.1e-08 62.0 63 49.2
EL10Ac2g02537 Beta vulgaris HOM05D004036 ORTHO05D004576 6.7e-08 61.6 131 33.6
AUR62032381 Chenopodium quinoa HOM05D004036 ORTHO05D004576 6.7e-08 61.6 148 33.1
GSVIVG01015440001 Vitis vinifera HOM05D004036 ORTHO05D004576 8.7e-08 61.2 88 42.0
CSS0014753 Camellia sinensis var. sinensis HOM05D004036 ORTHO05D004576 1.5e-07 60.5 93 38.7
Sc23g0007020 Simmondsia chinensis HOM05D004036 ORTHO05D004576 1.9e-07 60.1 136 32.4
Glyma.06G073400 Glycine max HOM05D004036 ORTHO05D004576 2.5e-07 59.7 138 32.6
MELO3C003669.2 Cucumis melo HOM05D004036 ORTHO05D004576 3.3e-07 59.3 66 43.9
Sed0023915 Sechium edule HOM05D004036 ORTHO05D004576 7.4e-07 58.2 90 40.0
vmacro05446 Vaccinium macrocarpon HOM05D004036 ORTHO05D004576 9.7e-07 57.8 137 34.3
Actinidia14638 Actinidia chinensis HOM05D004036 ORTHO05D004576 2.8e-06 56.2 92 39.1
Ah.12g063370 Amaranthus hybridus HOM05D004036 ORTHO05D004576 4.8e-06 55.5 155 32.3
Nn2g11835 Nelumbo nucifera HOM05D004036 ORTHO05D004576 8.2e-06 54.7 165 30.9
Prupe.7G234300 Prunus persica HOM05D004036 ORTHO05D004576 8.2e-06 54.7 148 29.1


User provided reference genes

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