Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p03780 Brassica napus HOM05D006471 ORTHO05D008157 1.3e-210 736.1 366 100.0
BraA03t09725Z Brassica rapa HOM05D006471 ORTHO05D008157 3.7e-205 718.0 366 97.8
C03p04260 Brassica napus HOM05D006471 ORTHO05D008157 8.5e-202 706.8 366 95.6
BolC3t12958H Brassica oleracea HOM05D006471 ORTHO05D008157 8.5e-202 706.8 366 95.6
BcaB01g05611 Brassica carinata HOM05D006471 ORTHO05D008157 1.4e-183 646.4 369 88.9
Sp6g34600 Schrenkiella parvula HOM05D006471 ORTHO05D008157 6.3e-173 610.9 369 84.0
Thhalv10013886m.g Eutrema salsugineum HOM05D006471 ORTHO05D008157 5.9e-171 604.4 369 82.9
BcaB01g05607 Brassica carinata HOM05D006471 ORTHO05D008157 3.8e-170 601.7 309 96.8
CARHR204730 Cardamine hirsuta HOM05D006471 ORTHO05D008157 1.8e-167 592.8 369 82.1
AT5G08340 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 4.6e-163 578.2 370 81.1
AL6G18780 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 5.9e-163 577.8 370 80.5
Carub.0006s0724 Capsella rubella HOM05D006471 ORTHO05D008157 1.4e-159 566.6 368 79.1
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 3.5e-155 552.0 371 76.8
THA.LOC104800739 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 3.5e-131 472.2 372 66.1
THA.LOC104818378 Tarenaya hassleriana HOM05D006471 ORTHO05D008157 3.9e-130 468.8 377 66.6
Ciclev10031833m.g Citrus clementina HOM05D006471 ORTHO05D008157 1.3e-128 463.8 377 63.1
Atru.chr11.1240 Acer truncatum HOM05D006471 ORTHO05D008157 2.7e-123 446.0 373 60.3
Manes.04G162800 Manihot esculenta HOM05D006471 ORTHO05D008157 4.6e-123 445.3 375 62.4
AT5G23330 Arabidopsis thaliana HOM05D006471 ORTHO05D008157 2.5e-121 439.5 371 63.1
Cpa.g.sc60.91 Carica papaya HOM05D006471 ORTHO05D008157 2.5e-121 439.5 357 64.4
AL6G34590 Arabidopsis lyrata HOM05D006471 ORTHO05D008157 2.0e-118 429.9 373 63.3
Thecc.02G154800 Theobroma cacao HOM05D006471 ORTHO05D008157 5.8e-118 428.3 356 60.7
TWI74G1585 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 6.4e-117 424.9 380 58.9
COL.COLO4_33107 Corchorus olitorius HOM05D006471 ORTHO05D008157 4.6e-115 418.7 375 57.3
Potri.007G075500 Populus trichocarpa HOM05D006471 ORTHO05D008157 1.0e-114 417.5 384 57.6
TWI77G0721 Tripterygium wilfordii HOM05D006471 ORTHO05D008157 6.7e-114 414.8 381 58.0
CiPaw.05G172000 Carya illinoinensis HOM05D006471 ORTHO05D008157 3.7e-112 409.1 376 56.6
Gorai.012G135400 Gossypium raimondii HOM05D006471 ORTHO05D008157 8.1e-112 407.9 378 54.5
Gohir.A04G109424 Gossypium hirsutum HOM05D006471 ORTHO05D008157 1.1e-111 407.5 378 55.3
Gohir.D04G148900 Gossypium hirsutum HOM05D006471 ORTHO05D008157 1.4e-111 407.1 378 54.2
Haze_11788 Corylus avellana HOM05D006471 ORTHO05D008157 2.4e-111 406.4 374 57.2
Duzib132G0448 Durio zibethinus HOM05D006471 ORTHO05D008157 3.1e-111 406.0 355 57.2
Cfa008776 Carpinus fangiana HOM05D006471 ORTHO05D008157 1.0e-109 401.0 374 56.4
Hma1.2p1_0044F.1_g026290 Hydrangea macrophylla HOM05D006471 ORTHO05D008157 1.9e-108 396.7 386 56.2
CSS0032634 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 5.5e-108 395.2 379 55.4
CSS0035224 Camellia sinensis var. sinensis HOM05D006471 ORTHO05D008157 7.1e-108 394.8 379 55.1
TAR628G0373 Trochodendron aralioides HOM05D006471 ORTHO05D008157 4.6e-107 392.1 354 59.0
CsaV3_5G029010 Cucumis sativus L. HOM05D006471 ORTHO05D008157 2.5e-105 386.3 373 56.0
Actinidia04343 Actinidia chinensis HOM05D006471 ORTHO05D008157 3.3e-105 386.0 299 62.9
Dinv17647 Davidia involucrata HOM05D000200 ORTHO05D001546 3.3e-105 386.0 357 56.6
CARHR190210 Cardamine hirsuta HOM05D006471 ORTHO05D008157 5.7e-105 385.2 307 66.4
Duzib248G0471 Durio zibethinus HOM05D000200 ORTHO05D001546 1.6e-104 383.6 294 63.6
Glyma.10G286400 Glycine max HOM05D006471 ORTHO05D008157 1.4e-103 380.6 305 63.3
RcHm_v2.0_Chr4g0446941 Rosa chinensis HOM05D006471 ORTHO05D008157 1.8e-103 380.2 323 62.8
Cfa014781 Carpinus fangiana HOM05D006857 ORTHO05D008679 2.4e-103 379.8 358 55.6
CANSAT78G1799 Cannabis sativa HOM05D006471 ORTHO05D008157 3.1e-103 379.4 371 55.3
VMungo0720G2382 Vigna mungo HOM05D006471 ORTHO05D008157 4.1e-103 379.0 377 55.7
Eucgr.G02586 Eucalyptus grandis HOM05D006471 ORTHO05D008157 6.9e-103 378.3 380 53.7
TPR.G4059 Trifolium pratense HOM05D006471 ORTHO05D008157 2.0e-102 376.7 370 55.7
Phvul.007G014500 Phaseolus vulgaris HOM05D006471 ORTHO05D008157 5.9e-102 375.2 371 56.3
PGR142G1667 Punica granatum HOM05D006471 ORTHO05D008157 7.6e-102 374.8 377 57.6
Sed0003381 Sechium edule HOM05D006471 ORTHO05D008157 1.3e-101 374.0 367 54.5
Sc10g0006980 Simmondsia chinensis HOM05D006471 ORTHO05D008157 2.2e-101 373.2 334 59.3
PSO782G0560 Papaver somniferum HOM05D006471 ORTHO05D008157 3.8e-101 372.5 371 54.4
ClCG02G014150 Citrullus lanatus HOM05D006471 ORTHO05D008157 5.0e-101 372.1 405 51.1
MD16G1004200 Malus domestica HOM05D006471 ORTHO05D008157 5.0e-101 372.1 307 62.9
Sabra07G0063800 Salix brachista HOM05D006471 ORTHO05D008157 8.5e-101 371.3 293 64.5
MBI06_g44273_MAGBIO Magnolia biondii HOM05D006471 ORTHO05D008157 1.4e-100 370.5 311 59.8
Psat6g234000 Pisum sativum HOM05D006471 ORTHO05D008157 1.9e-100 370.2 356 56.2
FvH4_4g37140 Fragaria vesca HOM05D006471 ORTHO05D008157 5.5e-100 368.6 381 56.2
Lj5g0013377 Lotus japonicus HOM05D006471 ORTHO05D008157 9.3e-100 367.9 377 54.1
DCAR_002605 Daucus carota HOM05D000200 ORTHO05D001546 2.1e-99 366.7 295 62.0
PSO170G1614 Papaver somniferum HOM05D006471 ORTHO05D008157 2.1e-99 366.7 364 54.7
Medtr1g114560 Medicago truncatula HOM05D006471 ORTHO05D008157 4.6e-99 365.5 332 59.9
EL10Ac9g22981 Beta vulgaris HOM05D006471 ORTHO05D008157 1.0e-98 364.4 298 63.1
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 1.3e-98 364.0 350 56.0
AUR62017731 Chenopodium quinoa HOM05D006471 ORTHO05D008157 3.0e-98 362.8 281 63.7
Rhsim12G0193800 Rhododendron simsii HOM05D006471 ORTHO05D008157 1.5e-97 360.5 289 62.3
Ah.16g106450 Amaranthus hybridus HOM05D000154 ORTHO05D000092 4.3e-97 359.0 297 61.6
MSTRG.8091 Avicennia marina HOM05D006471 ORTHO05D008157 4.3e-97 359.0 341 54.8
AUR62032950 Chenopodium quinoa HOM05D006471 ORTHO05D008157 7.4e-97 358.2 289 62.3
GSVIVG01034416001 Vitis vinifera HOM05D006471 ORTHO05D008157 1.8e-95 353.6 263 66.9
Ca_11258_v3 Cicer arietinum L. HOM05D000200 ORTHO05D001546 4.1e-95 352.4 291 61.9
vmacro16923 Vaccinium macrocarpon HOM05D006471 ORTHO05D008157 1.2e-94 350.9 272 65.1
Nn2g12513 Nelumbo nucifera HOM05D006471 ORTHO05D008157 3.4e-94 349.4 381 52.0
Lalb_Chr06g0163931 Lupinus albus HOM05D006471 ORTHO05D008157 1.0e-93 347.8 301 58.8
Aqoxy2G00030 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 1.7e-93 347.1 288 61.1
SalBow2G1748 Salvia bowleyana HOM05D006471 ORTHO05D008157 2.9e-93 346.3 300 58.7
Nitab4.5_0005997g0050 Nicotiana tabacum HOM05D006471 ORTHO05D008157 3.8e-93 345.9 356 55.3
Aqoxy2G01235 Aquilegia oxysepala HOM05D006471 ORTHO05D008157 5.0e-93 345.5 288 61.1
Lj3A846G60 Lonicera japonica HOM05D006471 ORTHO05D008157 8.5e-93 344.7 271 63.1
Nn8g40194 Nelumbo nucifera HOM05D006471 ORTHO05D008157 8.5e-93 344.7 271 63.8
HanXRQChr03g0076951 Helianthus annuus HOM05D006471 ORTHO05D008157 1.1e-92 344.4 288 61.5
Solyc04g008990.3 Solanum lycopersicum HOM05D006471 ORTHO05D008157 1.4e-92 344.0 298 59.7
Lsat_1_v5_gn_0_15460 Lactuca sativa HOM05D006471 ORTHO05D008157 1.9e-92 343.6 291 62.9
Sopen04g004170 Solanum pennellii HOM05D006471 ORTHO05D008157 1.9e-92 343.6 298 59.7
Peaxi162Scf00681g00221 Petunia axillaris HOM05D006471 ORTHO05D008157 5.5e-92 342.0 372 53.5
PGSC0003DMG400011512 Solanum tuberosum HOM05D006471 ORTHO05D008157 5.5e-92 342.0 369 51.5
MSTRG.428 Avicennia marina HOM05D006471 ORTHO05D008157 1.2e-91 340.9 301 58.1
Nitab4.5_0004979g0070 Nicotiana tabacum HOM05D006471 ORTHO05D008157 2.1e-91 340.1 349 55.9
CAN.G274.15 Capsicum annuum HOM05D006471 ORTHO05D008157 6.7e-90 335.1 355 51.8
MELO3C011756.2 Cucumis melo HOM05D006471 ORTHO05D008157 8.8e-90 334.7 481 42.6
Oeu006329.1 Olea europaea HOM05D006471 ORTHO05D008157 4.8e-88 328.9 322 54.7
Migut.L00869 Erythranthe guttata HOM05D006471 ORTHO05D008157 1.4e-87 327.4 276 61.6
ECA240G3241 Erigeron canadensis HOM05D006471 ORTHO05D008157 3.1e-87 326.2 245 67.8
SGA_v2.0_scaffold92G28263 Striga asiatica HOM05D006471 ORTHO05D008157 4.1e-87 325.9 316 53.8
Cc00_g09970 Coffea canephora HOM05D006471 ORTHO05D008157 1.5e-86 323.9 225 72.0
CDE02G4670 Ceratophyllum demersum HOM05D006471 ORTHO05D008157 1.6e-83 313.9 325 53.2
Os03g0801700 Oryza sativa ssp. japonica HOM05D006471 ORTHO05D008157 3.6e-83 312.8 274 58.4
HPP92_017784 Vanilla planifolia HOM05D006471 ORTHO05D008157 4.7e-83 312.4 278 58.3
SGA_v2.0_scaffold580G53041 Striga asiatica HOM05D006471 ORTHO05D004488 1.0e-82 311.2 315 52.7
unitig_749.g13340 Utricularia gibba HOM05D006471 ORTHO05D008157 2.6e-81 306.6 273 56.8
FAN17G0671 Fragaria x ananassa HOM05D006471 ORTHO05D008157 3.3e-81 306.2 259 63.7
FAN07G1501 Fragaria x ananassa HOM05D002605 ORTHO05D002842 5.7e-81 305.4 238 66.8
Zm00001eb061200 Zea mays HOM05D006471 ORTHO05D008157 9.7e-81 304.7 274 58.4
ATR0665G473 Amborella trichopoda HOM05D006471 ORTHO05D008157 8.2e-80 301.6 273 58.2
SGA_v2.0_scaffold42G16129 Striga asiatica HOM05D006471 ORTHO05D008157 1.1e-79 301.2 313 52.1
arahy.Tifrunner.gnm1.ann1.V4ETXF Arachis hypogaea HOM05D006471 ORTHO05D008157 4.1e-79 299.3 339 50.4
Prupe.1G349200 Prunus persica HOM05D006471 ORTHO05D008157 5.5e-76 288.9 237 63.3
Carub.0006s2111 Capsella rubella HOM05D006471 ORTHO05D008157 1.6e-75 287.3 230 66.5
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 1.8e-74 283.9 242 59.9
QL08p056974 Quercus lobata HOM05D006471 ORTHO05D008157 7.5e-73 278.5 227 60.8
MD13G1003200 Malus domestica HOM05D006471 ORTHO05D008157 2.2e-72 276.9 186 72.0
SEGI_40912 Sequoiadendron giganteum HOM05D006471 ORTHO05D008157 1.3e-69 267.7 265 55.1
Pp3c5_28930 Physcomitrium patens HOM05D006471 ORTHO05D008157 7.2e-68 261.9 290 48.6
Mapoly0019s0104 Marchantia polymorpha HOM05D006471 ORTHO05D008157 4.8e-64 249.2 233 53.6
Pp3c14_5150 Physcomitrium patens HOM05D006471 ORTHO05D008157 1.0e-61 241.5 277 46.2
SMO141G0020 Selaginella moellendorffii HOM05D006471 ORTHO05D008157 2.5e-60 236.9 191 58.1
Glyma.20G102800 Glycine max HOM05D006471 ORTHO05D008157 2.5e-52 210.3 299 41.8
MCO07G267 Micromonas commoda HOM05D006471 ORTHO05D008157 6.2e-43 179.1 242 44.2
AagrBONN_evm.TU.Sc2ySwM_362.1554 Anthoceros agrestis HOM05D006471 ORTHO05D008157 3.1e-42 176.8 232 41.4
FAN12G2193 Fragaria x ananassa HOM05D006471 ORTHO05D008157 1.1e-36 158.3 138 63.0
Sc06g0004050 Simmondsia chinensis HOM05D006471 ORTHO05D008157 2.1e-35 154.1 145 61.4
Carub.0006s2110 Capsella rubella HOM05D006471 ORTHO05D008157 8.9e-34 148.7 142 57.0
Cre13.g607600 Chlamydomonas reinhardtii HOM05D006471 ORTHO05D008157 3.5e-22 110.2 349 28.4
QL08p056966 Quercus lobata HOM05D006471 ORTHO05D008157 1.7e-21 107.8 80 62.5
BolC9t53696H Brassica oleracea HOM05D006471 ORTHO05D008157 2.3e-13 80.9 80 51.2
arahy.Tifrunner.gnm1.ann1.SQAN1F Arachis hypogaea HOM05D006471 ORTHO05D008157 2.1e-11 74.3 47 72.3


User provided reference genes

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